Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39689 * 120.16662 * 250.48640 * 3 2 1 5 5 C 1.37875 * 119.86602 * 179.74952 * 4 3 2 6 6 C 1.38439 * 120.21789 * 0.53194 * 5 4 3 7 7 C 1.50702 * 119.82695 * 179.72140 * 6 5 4 8 8 N 1.46496 * 109.47269 * 276.61300 * 7 6 5 9 9 C 1.36933 * 120.00433 * 95.78023 * 8 7 6 10 10 H 1.08001 * 120.00265 * 221.45206 * 9 8 7 11 11 C 1.38813 * 119.99987 * 41.45755 * 9 8 7 12 12 N 1.31620 * 119.99626 * 17.78826 * 11 9 8 13 13 Si 1.86798 * 119.99971 * 197.78951 * 11 9 8 14 14 H 1.48498 * 109.46940 * 89.99974 * 13 11 9 15 15 H 1.48501 * 109.46978 * 209.99951 * 13 11 9 16 16 H 1.48499 * 109.47354 * 329.99745 * 13 11 9 17 17 C 1.46507 * 119.99772 * 275.78294 * 8 7 6 18 18 C 1.52998 * 109.47183 * 89.99741 * 17 8 7 19 19 C 1.50702 * 109.47592 * 180.02562 * 18 17 8 20 20 O 1.20826 * 119.99544 * 359.97438 * 19 18 17 21 21 O 1.34223 * 120.00223 * 180.02562 * 19 18 17 22 22 C 1.38232 * 120.35208 * 359.74358 * 6 5 4 23 23 C 1.38282 * 120.11979 * 359.97438 * 22 6 5 24 24 F 1.35095 * 120.11266 * 179.97438 * 23 22 6 25 25 H 1.08000 * 120.06762 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.88683 * 180.25634 * 5 4 3 27 27 H 1.09007 * 109.46979 * 36.60562 * 7 6 5 28 28 H 1.08998 * 109.47480 * 156.60552 * 7 6 5 29 29 H 0.97003 * 119.99210 * 180.02562 * 12 11 9 30 30 H 1.08995 * 109.47162 * 209.99756 * 17 8 7 31 31 H 1.09000 * 109.46699 * 330.00132 * 17 8 7 32 32 H 1.09005 * 109.47420 * 300.00510 * 18 17 8 33 33 H 1.09006 * 109.47383 * 60.00002 * 18 17 8 34 34 H 0.96698 * 117.00064 * 180.02562 * 21 19 18 35 35 H 1.07995 * 119.94367 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 0.4044 1.1383 5 6 4.6485 0.3976 1.1333 6 6 5.3392 0.0027 0.0004 7 6 6.8462 0.0047 0.0024 8 7 7.3332 1.3531 -0.2990 9 6 7.6715 2.2027 0.7202 10 1 7.3929 3.2449 0.6695 11 6 8.3727 1.7244 1.8187 12 7 9.0124 0.5767 1.7421 13 14 8.4081 2.7096 3.4053 14 1 7.2697 2.3013 4.2670 15 1 9.6853 2.4537 4.1184 16 1 8.2976 4.1569 3.0919 17 6 7.4582 1.7926 -1.6909 18 6 6.1479 2.4424 -2.1402 19 6 6.2762 2.8939 -3.5723 20 8 7.3098 2.7149 -4.1718 21 8 5.2426 3.4959 -4.1813 22 6 4.6539 -0.3931 -1.1330 23 6 3.2711 -0.3974 -1.1417 24 9 2.6015 -0.7838 -2.2496 25 1 2.7335 0.7169 2.0221 26 1 5.1914 0.7058 2.0146 27 1 7.2086 -0.3015 0.9839 28 1 7.2116 -0.6909 -0.7530 29 1 9.5021 0.2424 2.5099 30 1 8.2691 2.5164 -1.7720 31 1 7.6736 0.9329 -2.3254 32 1 5.3369 1.7186 -2.0591 33 1 5.9324 3.3021 -1.5057 34 1 5.3722 3.7675 -5.1003 35 1 5.1994 -0.6996 -2.0133 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -83.265283 kcal Electronic energy + Delta-G solvation = -22922.993194 eV Core-core repulsion = 19221.507269 eV Total energy + Delta-G solvation = -3701.485925 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.03562 -41.16303 -40.33249 -38.04169 -37.27420 -36.89504 -33.94136 -33.16418 -31.69996 -31.03136 -27.91506 -26.49578 -24.13422 -23.76621 -22.56423 -21.51095 -20.12022 -19.07281 -18.69712 -17.95407 -17.48191 -17.30101 -16.98930 -16.76853 -16.51423 -15.72107 -15.45416 -15.18880 -15.06872 -14.81576 -14.52374 -14.41245 -14.04603 -13.97790 -13.87253 -13.32497 -13.12696 -12.97514 -12.71104 -12.57188 -12.46815 -12.37797 -12.11947 -11.98428 -11.84300 -11.61732 -11.52132 -10.50273 -9.89012 -9.63316 -8.55192 -7.84049 -5.48507 -0.31704 0.26209 1.30071 1.50832 1.54504 1.60183 1.65357 1.86414 2.23853 2.58180 2.73875 2.76661 3.08830 3.31217 3.76708 3.88442 4.04425 4.19315 4.26293 4.31294 4.39455 4.65796 4.75257 4.80626 4.86349 4.99074 5.08021 5.15333 5.26574 5.35604 5.61907 5.68652 5.76203 5.79614 5.87012 6.34710 6.52696 7.08901 7.19526 7.79663 8.36946 9.15919 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.006746 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.069972 B = 4149.677368 C = 5978.540699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.281 3.719 3 C -0.087 4.087 4 C -0.026 4.026 5 C -0.113 4.113 6 C -0.020 4.020 7 C 0.178 3.822 8 N -0.580 5.580 9 C -0.268 4.268 10 H 0.060 0.940 11 C -0.016 4.016 12 N -0.910 5.910 13 Si 0.950 3.050 14 H -0.273 1.273 15 H -0.302 1.302 16 H -0.274 1.274 17 C 0.163 3.837 18 C -0.128 4.128 19 C 0.489 3.511 20 O -0.552 6.552 21 O -0.515 6.515 22 C -0.154 4.154 23 C 0.142 3.858 24 F -0.139 7.139 25 H 0.163 0.837 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.255 0.745 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.424 0.576 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 0.216 -4.192 9.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.033 4.033 3 C -0.092 4.092 4 C -0.046 4.046 5 C -0.132 4.132 6 C -0.024 4.024 7 C 0.052 3.948 8 N -0.299 5.299 9 C -0.398 4.398 10 H 0.077 0.923 11 C -0.216 4.216 12 N -0.552 5.552 13 Si 0.778 3.222 14 H -0.199 1.199 15 H -0.229 1.229 16 H -0.199 1.199 17 C 0.036 3.964 18 C -0.168 4.168 19 C 0.333 3.667 20 O -0.443 6.443 21 O -0.328 6.328 22 C -0.174 4.174 23 C 0.120 3.880 24 F -0.117 7.117 25 H 0.181 0.819 26 H 0.152 0.848 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.285 0.715 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.416 -0.043 -3.881 10.184 hybrid contribution 0.737 0.532 -0.060 0.911 sum -8.679 0.490 -3.942 9.545 Atomic orbital electron populations 1.81217 1.12795 1.10661 1.08460 1.25540 0.92442 0.92513 0.92847 1.15904 0.83893 1.12900 0.96514 1.21233 0.93587 0.93733 0.96046 1.21136 0.93223 0.99643 0.99233 1.21185 0.98971 0.90451 0.91836 1.19965 0.85673 0.86554 1.02591 1.43772 1.72917 1.12769 1.00420 1.19164 1.29578 0.92747 0.98324 0.92288 1.25841 0.95347 0.97954 1.02414 1.70096 1.32307 1.22456 1.30368 0.85572 0.76823 0.79102 0.80722 1.19902 1.22872 1.19933 1.20618 0.92857 0.97389 0.85508 1.22129 1.03547 1.03512 0.87580 1.23790 0.80014 0.72715 0.90144 1.90690 1.31310 1.54590 1.67681 1.84547 1.42953 1.71110 1.34220 1.21015 0.90832 1.04859 1.00687 1.17628 0.90049 0.98526 0.81809 1.91504 1.80762 1.88442 1.51036 0.81933 0.84802 0.89978 0.93564 0.93562 0.94196 0.93502 0.87341 0.87828 0.71518 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.90 18.54 19.00 0.35 -13.54 16 2 C 0.28 7.57 14.98 88.33 1.32 8.89 16 3 C -0.09 -2.13 5.74 -21.29 -0.12 -2.25 16 4 C -0.03 -0.57 9.76 22.53 0.22 -0.35 16 5 C -0.11 -3.07 9.70 22.23 0.22 -2.85 16 6 C -0.02 -0.60 4.94 -19.82 -0.10 -0.69 16 7 C 0.18 6.56 5.37 85.63 0.46 7.02 16 8 N -0.58 -23.57 2.39 -706.34 -1.69 -25.26 16 9 C -0.27 -12.23 9.44 84.03 0.79 -11.44 16 10 H 0.06 2.71 7.89 -2.91 -0.02 2.69 16 11 C -0.02 -0.77 4.95 84.86 0.42 -0.35 16 12 N -0.91 -46.10 11.62 21.65 0.25 -45.85 16 13 Si 0.95 38.57 29.59 68.60 2.03 40.60 16 14 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 15 H -0.30 -12.81 7.11 99.48 0.71 -12.11 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 C 0.16 5.98 4.99 86.38 0.43 6.41 16 18 C -0.13 -3.81 6.00 29.85 0.18 -3.63 16 19 C 0.49 14.01 8.33 71.24 0.59 14.60 16 20 O -0.55 -19.14 16.74 21.96 0.37 -18.77 16 21 O -0.51 -11.27 13.42 -51.35 -0.69 -11.96 16 22 C -0.15 -3.96 7.72 22.28 0.17 -3.79 16 23 C 0.14 3.59 7.28 22.67 0.17 3.76 16 24 F -0.14 -3.70 16.81 44.97 0.76 -2.95 16 25 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 26 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.08 3.53 5.76 -2.38 -0.01 3.52 16 28 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 29 H 0.26 12.64 8.31 -92.71 -0.77 11.87 16 30 H 0.04 1.63 8.00 -2.39 -0.02 1.61 16 31 H 0.05 1.70 7.91 -2.39 -0.02 1.68 16 32 H 0.11 3.01 5.61 -2.38 -0.01 2.99 16 33 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 34 H 0.42 5.33 9.10 -74.06 -0.67 4.65 16 35 H 0.15 3.49 8.05 -2.91 -0.02 3.47 16 Total: -1.00 -57.48 322.38 6.61 -50.87 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.48 Total: 11.54 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 4.75 Total: 15.33 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.08 Total: -84.65 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.32 Total: -30.73 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.76 Total: -2.95 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -57.48 6.61 -50.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.397 kcal (2) G-P(sol) polarization free energy of solvation -57.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds