Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33609 * 125.68150 * 2 1 4 4 C 1.34569 * 110.89527 * 180.02562 * 3 2 1 5 5 C 1.47931 * 125.57347 * 179.97438 * 4 3 2 6 6 N 1.34193 * 126.69921 * 179.97438 * 5 4 3 7 7 N 1.28985 * 107.25279 * 180.02562 * 6 5 4 8 8 N 1.28719 * 108.98928 * 359.97438 * 7 6 5 9 9 H 0.97002 * 125.31756 * 179.97438 * 8 7 6 10 10 N 1.28871 * 109.36216 * 359.73192 * 8 7 6 11 11 C 1.35534 * 108.85203 * 359.70915 * 4 3 2 12 12 C 1.36645 * 125.67525 * 180.02562 * 2 1 3 13 13 C 1.47281 * 127.12466 * 359.95919 * 12 2 1 14 14 O 1.21536 * 119.99949 * 0.02562 * 13 12 2 15 15 O 1.34763 * 120.00501 * 180.02562 * 13 12 2 16 16 C 1.45200 * 117.00277 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47147 * 329.99855 * 16 15 13 18 18 C 1.53006 * 109.47003 * 89.99709 * 16 15 13 19 19 C 1.50697 * 109.46919 * 209.99656 * 16 15 13 20 20 H 1.07994 * 120.00496 * 0.02562 * 19 16 15 21 21 C 1.37887 * 119.99690 * 179.97438 * 19 16 15 22 22 N 1.31507 * 120.00093 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99676 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47515 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46678 * 119.99923 * 23 21 19 26 26 H 1.48493 * 109.47346 * 239.99833 * 23 21 19 27 27 H 1.08999 * 109.47361 * 269.96147 * 1 2 3 28 28 H 1.09004 * 109.47021 * 29.96240 * 1 2 3 29 29 H 1.09002 * 109.47092 * 149.95605 * 1 2 3 30 30 H 1.07999 * 127.07617 * 180.26569 * 11 4 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 18 16 15 32 32 H 1.08993 * 109.46955 * 300.00258 * 18 16 15 33 33 H 1.09000 * 109.47050 * 60.00087 * 18 16 15 34 34 H 0.96999 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0853 0.0000 4 6 3.5875 0.7418 -0.0006 5 6 4.7266 1.6856 -0.0013 6 7 6.0306 1.3687 -0.0014 7 7 6.6932 2.4753 -0.0015 8 7 5.8642 3.4599 -0.0021 9 1 6.1084 4.3987 -0.0019 10 7 4.6589 3.0037 -0.0080 11 6 3.6836 -0.6101 0.0056 12 6 2.3039 -1.1100 -0.0005 13 6 1.8684 -2.5170 -0.0003 14 8 0.6832 -2.7862 -0.0001 15 8 2.7839 -3.5058 -0.0003 16 6 2.2825 -4.8685 -0.0007 17 1 1.3217 -4.9023 0.5130 18 6 2.1066 -5.3468 -1.4434 19 6 3.2637 -5.7650 0.7096 20 1 4.1730 -5.3519 1.1206 21 6 3.0001 -7.1125 0.8357 22 7 1.8921 -7.6153 0.3366 23 14 4.2160 -8.2236 1.7168 24 1 5.3732 -7.4188 2.1843 25 1 3.5513 -8.8579 2.8835 26 1 4.6898 -9.2772 0.7839 27 1 -0.3634 -0.0007 1.0276 28 1 -0.3633 0.8904 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 4.5892 -1.1984 0.0108 31 1 1.7306 -6.3699 -1.4437 32 1 1.3970 -4.6984 -1.9571 33 1 3.0674 -5.3131 -1.9571 34 1 1.7068 -8.5633 0.4250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606169396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = 52.045919 kcal Electronic energy + Delta-G solvation = -22305.741142 eV Core-core repulsion = 18630.042712 eV Total energy + Delta-G solvation = -3675.698429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.76945 -42.69459 -39.23630 -35.75195 -34.82371 -33.86384 -33.32621 -33.00437 -31.64554 -29.58336 -27.63387 -25.30729 -24.96926 -24.27783 -23.34764 -21.78655 -20.48892 -19.64278 -19.09784 -17.77916 -17.53861 -16.56357 -16.45208 -16.18857 -15.28480 -14.85289 -14.77358 -14.40365 -14.18548 -13.26314 -13.10806 -13.06734 -12.88427 -12.63046 -12.19342 -11.97632 -11.78161 -11.73416 -11.43782 -11.40523 -11.22225 -11.06143 -10.81531 -10.33753 -10.25819 -9.80063 -9.76462 -9.52497 -8.87858 -8.54038 -8.46700 -6.16538 -4.22825 0.57614 1.00320 1.48978 1.77525 2.24827 2.48512 3.26245 3.32649 3.37076 3.44706 3.57688 3.67628 4.08357 4.36122 4.56119 4.82291 5.04014 5.05893 5.17055 5.34163 5.43086 5.46055 5.63648 5.92118 6.01789 6.07380 6.19118 6.65297 6.81446 6.92040 6.93493 7.16530 7.61520 7.74191 7.81226 7.93791 8.15572 8.63258 8.90329 9.42543 10.91061 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.003714 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.156670 B = 7536.894464 C = 8739.545309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.105 3.895 3 O -0.158 6.158 4 C 0.028 3.972 5 C 0.262 3.738 6 N -0.248 5.248 7 N -0.042 5.042 8 N -0.226 5.226 9 H 0.477 0.523 10 N -0.286 5.286 11 C -0.074 4.074 12 C -0.219 4.219 13 C 0.530 3.470 14 O -0.519 6.519 15 O -0.346 6.346 16 C 0.216 3.784 17 H 0.048 0.952 18 C -0.155 4.155 19 C -0.519 4.519 20 H 0.070 0.930 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.911 3.089 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.179 0.821 31 H 0.100 0.900 32 H 0.016 0.984 33 H 0.037 0.963 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 21.289 -1.391 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.054 6.054 4 C -0.022 4.022 5 C -0.017 4.017 6 N -0.123 5.123 7 N -0.038 5.038 8 N -0.072 5.072 9 H 0.332 0.668 10 N -0.138 5.138 11 C -0.097 4.097 12 C -0.221 4.221 13 C 0.375 3.625 14 O -0.411 6.411 15 O -0.261 6.261 16 C 0.164 3.836 17 H 0.066 0.934 18 C -0.213 4.213 19 C -0.557 4.557 20 H 0.089 0.911 21 C -0.140 4.140 22 N -0.528 5.528 23 Si 0.738 3.262 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.196 0.804 31 H 0.118 0.882 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.043 21.442 -1.413 21.703 hybrid contribution 0.335 -0.271 0.400 0.588 sum 3.378 21.171 -1.013 21.463 Atomic orbital electron populations 1.20753 0.82739 1.05567 1.05008 1.23003 0.94056 0.82308 0.95592 1.83712 1.15112 1.34609 1.71918 1.17427 0.79586 0.89842 1.15391 1.21820 0.90705 0.86649 1.02508 1.76229 1.01237 1.17308 1.17498 1.78978 1.19962 0.90236 1.14586 1.47695 1.00962 1.12603 1.45935 0.66823 1.75146 1.05104 1.11712 1.21866 1.23097 0.98091 0.91355 0.97155 1.20514 0.92823 0.92429 1.16381 1.19704 0.84462 0.85276 0.73097 1.90757 1.18128 1.84696 1.47542 1.86572 1.39188 1.18856 1.81521 1.20691 0.96716 0.71412 0.94811 0.93381 1.22171 0.98951 1.03652 0.96526 1.21077 1.06315 0.92063 1.36293 0.91141 1.24880 0.95870 0.97626 0.95595 1.69904 1.24220 1.13695 1.44937 0.86224 0.80759 0.80063 0.79140 1.19407 1.20788 1.20729 0.88653 0.90014 0.86600 0.80382 0.88204 0.96444 0.94363 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.88 36.01 0.36 -0.59 16 2 C 0.10 1.49 7.37 -34.88 -0.26 1.23 16 3 O -0.16 -2.18 10.54 6.80 0.07 -2.11 16 4 C 0.03 0.40 7.22 -36.58 -0.26 0.14 16 5 C 0.26 3.44 8.20 -156.26 -1.28 2.16 16 6 N -0.25 -3.28 12.52 32.08 0.40 -2.88 16 7 N -0.04 -0.44 13.46 60.35 0.81 0.37 16 8 N -0.23 -1.72 7.90 60.35 0.48 -1.24 16 9 H 0.48 1.08 8.96 -340.33 -3.05 -1.97 16 10 N -0.29 -3.12 12.41 32.10 0.40 -2.72 16 11 C -0.07 -1.15 10.95 -37.11 -0.41 -1.55 16 12 C -0.22 -3.74 6.31 -103.36 -0.65 -4.39 16 13 C 0.53 11.27 7.93 34.41 0.27 11.54 16 14 O -0.52 -11.70 14.09 -19.29 -0.27 -11.97 16 15 O -0.35 -8.32 9.77 -40.66 -0.40 -8.72 16 16 C 0.22 5.79 2.56 -27.88 -0.07 5.72 16 17 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 18 C -0.16 -3.93 9.33 37.16 0.35 -3.58 16 19 C -0.52 -14.60 8.90 -34.44 -0.31 -14.91 16 20 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 23 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.12 1.49 6.47 -51.93 -0.34 1.15 16 30 H 0.18 2.63 8.06 -52.49 -0.42 2.21 16 31 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 312.23 15.07 4.71 4.71 Total: -1.00 -32.90 312.23 -6.29 -39.18 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.73 Total: -3.54 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.36 Total: -2.63 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 2.72 Total: -31.04 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.60 Total: -22.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.90 -6.29 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606169396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.228 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds