Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33609 * 125.68150 * 2 1 4 4 C 1.34569 * 110.89527 * 180.02562 * 3 2 1 5 5 C 1.47931 * 125.57347 * 179.97438 * 4 3 2 6 6 N 1.34193 * 126.69921 * 179.97438 * 5 4 3 7 7 N 1.28985 * 107.25279 * 180.02562 * 6 5 4 8 8 N 1.28719 * 108.98928 * 359.97438 * 7 6 5 9 9 H 0.97002 * 125.31756 * 179.97438 * 8 7 6 10 10 N 1.28871 * 109.36216 * 359.73192 * 8 7 6 11 11 C 1.35534 * 108.85203 * 359.70915 * 4 3 2 12 12 C 1.36645 * 125.67525 * 180.02562 * 2 1 3 13 13 C 1.47281 * 127.12466 * 359.95919 * 12 2 1 14 14 O 1.21536 * 119.99949 * 0.02562 * 13 12 2 15 15 O 1.34763 * 120.00501 * 180.02562 * 13 12 2 16 16 C 1.45200 * 117.00277 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47147 * 329.99855 * 16 15 13 18 18 C 1.53006 * 109.47003 * 89.99709 * 16 15 13 19 19 C 1.50697 * 109.46919 * 209.99656 * 16 15 13 20 20 H 1.07994 * 120.00496 * 0.02562 * 19 16 15 21 21 C 1.37887 * 119.99690 * 179.97438 * 19 16 15 22 22 N 1.31507 * 120.00093 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 119.99676 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47515 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46678 * 119.99923 * 23 21 19 26 26 H 1.48493 * 109.47346 * 239.99833 * 23 21 19 27 27 H 1.08999 * 109.47361 * 269.96147 * 1 2 3 28 28 H 1.09004 * 109.47021 * 29.96240 * 1 2 3 29 29 H 1.09002 * 109.47092 * 149.95605 * 1 2 3 30 30 H 1.07999 * 127.07617 * 180.26569 * 11 4 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 18 16 15 32 32 H 1.08993 * 109.46955 * 300.00258 * 18 16 15 33 33 H 1.09000 * 109.47050 * 60.00087 * 18 16 15 34 34 H 0.96999 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0853 0.0000 4 6 3.5875 0.7418 -0.0006 5 6 4.7266 1.6856 -0.0013 6 7 6.0306 1.3687 -0.0014 7 7 6.6932 2.4753 -0.0015 8 7 5.8642 3.4599 -0.0021 9 1 6.1084 4.3987 -0.0019 10 7 4.6589 3.0037 -0.0080 11 6 3.6836 -0.6101 0.0056 12 6 2.3039 -1.1100 -0.0005 13 6 1.8684 -2.5170 -0.0003 14 8 0.6832 -2.7862 -0.0001 15 8 2.7839 -3.5058 -0.0003 16 6 2.2825 -4.8685 -0.0007 17 1 1.3217 -4.9023 0.5130 18 6 2.1066 -5.3468 -1.4434 19 6 3.2637 -5.7650 0.7096 20 1 4.1730 -5.3519 1.1206 21 6 3.0001 -7.1125 0.8357 22 7 1.8921 -7.6153 0.3366 23 14 4.2160 -8.2236 1.7168 24 1 5.3732 -7.4188 2.1843 25 1 3.5513 -8.8579 2.8835 26 1 4.6898 -9.2772 0.7839 27 1 -0.3634 -0.0007 1.0276 28 1 -0.3633 0.8904 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 4.5892 -1.1984 0.0108 31 1 1.7306 -6.3699 -1.4437 32 1 1.3970 -4.6984 -1.9571 33 1 3.0674 -5.3131 -1.9571 34 1 1.7068 -8.5633 0.4250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606169396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = 30.074159 kcal Electronic energy + Delta-G solvation = -22306.693909 eV Core-core repulsion = 18630.042712 eV Total energy + Delta-G solvation = -3676.651196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.64052 -43.87271 -41.00926 -37.59103 -35.72993 -35.31321 -34.79462 -34.33399 -32.67017 -31.63137 -28.71948 -27.43284 -25.98819 -25.51250 -24.49663 -23.23856 -22.11118 -20.82604 -20.26546 -19.14337 -18.54628 -18.43422 -17.87480 -17.60091 -16.86078 -16.55924 -16.36996 -15.74255 -15.30329 -14.79155 -14.41719 -14.24821 -14.09195 -13.95211 -13.79475 -13.50321 -13.19516 -12.99325 -12.91529 -12.78699 -12.61294 -12.37004 -12.34649 -12.31415 -12.12917 -11.56976 -11.47397 -11.05488 -10.95860 -10.57849 -9.65326 -8.26914 -6.42885 -0.38206 0.01453 0.21255 0.86285 1.38854 1.41101 1.44330 1.44550 1.58465 1.95576 2.01637 2.41824 2.54358 3.04003 3.11647 3.49061 3.65088 3.73724 4.06795 4.20765 4.42601 4.45943 4.56196 4.61413 4.64688 4.82342 4.86364 4.98264 5.10403 5.20072 5.50228 5.51148 5.63679 5.68407 5.92036 6.08405 6.61400 6.93099 6.95021 7.28456 8.81123 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.003714 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.156670 B = 7536.894464 C = 8739.545309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.133 3.867 3 O -0.148 6.148 4 C 0.039 3.961 5 C 0.245 3.755 6 N -0.275 5.275 7 N -0.042 5.042 8 N -0.189 5.189 9 H 0.499 0.501 10 N -0.280 5.280 11 C -0.086 4.086 12 C -0.255 4.255 13 C 0.527 3.473 14 O -0.539 6.539 15 O -0.356 6.356 16 C 0.219 3.781 17 H 0.014 0.986 18 C -0.143 4.143 19 C -0.548 4.548 20 H 0.066 0.934 21 C 0.018 3.982 22 N -0.915 5.915 23 Si 0.981 3.019 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.271 1.271 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.177 0.823 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.043 0.957 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 23.183 -1.123 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 O -0.042 6.042 4 C -0.011 4.011 5 C -0.034 4.034 6 N -0.148 5.148 7 N -0.037 5.037 8 N -0.041 5.041 9 H 0.360 0.640 10 N -0.133 5.133 11 C -0.108 4.108 12 C -0.257 4.257 13 C 0.374 3.626 14 O -0.432 6.432 15 O -0.273 6.273 16 C 0.166 3.834 17 H 0.032 0.968 18 C -0.200 4.200 19 C -0.586 4.586 20 H 0.084 0.916 21 C -0.182 4.182 22 N -0.553 5.553 23 Si 0.805 3.195 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.196 1.196 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.194 0.806 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.794 23.380 -1.154 23.714 hybrid contribution 0.082 -0.640 0.308 0.715 sum 3.876 22.740 -0.846 23.083 Atomic orbital electron populations 1.20928 0.80393 1.06494 1.06320 1.23466 0.95070 0.81383 0.92323 1.83757 1.15005 1.34040 1.71434 1.17461 0.79936 0.89632 1.14107 1.21658 0.90374 0.87187 1.04178 1.76232 1.01460 1.18609 1.18532 1.78932 1.19826 0.90231 1.14679 1.47766 0.99766 1.13466 1.43108 0.64028 1.75099 1.06207 1.10734 1.21301 1.23033 0.97425 0.92080 0.98295 1.20274 0.94473 0.90674 1.20303 1.20276 0.83977 0.86210 0.72174 1.90733 1.18687 1.85187 1.48585 1.86551 1.39985 1.18366 1.82352 1.20405 0.95001 0.72984 0.95018 0.96814 1.21996 0.99359 1.02699 0.95996 1.21327 1.06602 0.93086 1.37551 0.91596 1.25789 0.97658 0.98783 0.95940 1.70009 1.25643 1.14351 1.45332 0.85154 0.78357 0.77934 0.78082 1.18918 1.20031 1.19627 0.86923 0.86309 0.88334 0.80565 0.89883 0.95469 0.93752 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.88 71.24 0.70 -1.04 16 2 C 0.13 3.61 7.37 25.31 0.19 3.79 16 3 O -0.15 -3.80 10.54 1.40 0.01 -3.79 16 4 C 0.04 1.08 7.22 24.21 0.17 1.25 16 5 C 0.25 6.07 8.20 137.12 1.12 7.19 16 6 N -0.27 -6.95 12.52 -52.41 -0.66 -7.61 16 7 N -0.04 -0.79 13.46 37.02 0.50 -0.30 16 8 N -0.19 -2.36 7.90 37.02 0.29 -2.07 16 9 H 0.50 0.62 8.96 -347.51 -3.12 -2.49 16 10 N -0.28 -5.41 12.41 -52.36 -0.65 -6.06 16 11 C -0.09 -2.67 10.95 23.87 0.26 -2.41 16 12 C -0.25 -8.79 6.31 -19.05 -0.12 -8.91 16 13 C 0.53 23.16 7.93 70.20 0.56 23.72 16 14 O -0.54 -25.12 14.09 19.72 0.28 -24.84 16 15 O -0.36 -17.84 9.77 -56.73 -0.55 -18.40 16 16 C 0.22 12.19 2.56 29.85 0.08 12.27 16 17 H 0.01 0.86 7.16 -2.39 -0.02 0.84 16 18 C -0.14 -7.43 9.33 71.98 0.67 -6.76 16 19 C -0.55 -31.58 8.90 25.60 0.23 -31.35 16 20 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 21 C 0.02 1.00 5.30 84.66 0.45 1.45 16 22 N -0.92 -52.57 11.32 21.45 0.24 -52.33 16 23 Si 0.98 43.31 29.54 68.60 2.03 45.34 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.10 2.46 6.47 -2.39 -0.02 2.44 16 30 H 0.18 5.42 8.06 -2.91 -0.02 5.39 16 31 H 0.08 4.60 6.07 -2.39 -0.01 4.59 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -72.07 312.23 3.87 -68.21 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -1.94 Total: 2.64 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.31 Total: -0.80 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -0.27 Total: -68.35 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.26 Total: -47.02 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.07 3.87 -68.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606169396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.280 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds