Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33624 * 125.67507 * 2 1 4 4 C 1.34571 * 110.88803 * 180.02562 * 3 2 1 5 5 C 1.47936 * 125.57053 * 179.97438 * 4 3 2 6 6 N 1.34190 * 126.70400 * 179.97438 * 5 4 3 7 7 N 1.28979 * 107.25561 * 180.02562 * 6 5 4 8 8 N 1.28719 * 108.99134 * 359.97438 * 7 6 5 9 9 H 0.96999 * 125.31919 * 179.97438 * 8 7 6 10 10 N 1.28874 * 109.36209 * 359.73218 * 8 7 6 11 11 C 1.35532 * 108.85646 * 359.71126 * 4 3 2 12 12 C 1.36648 * 125.68223 * 180.02562 * 2 1 3 13 13 C 1.47277 * 127.11716 * 359.96057 * 12 2 1 14 14 O 1.21529 * 120.00530 * 0.02562 * 13 12 2 15 15 O 1.34769 * 119.99777 * 180.02562 * 13 12 2 16 16 C 1.45206 * 116.99987 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.46708 * 30.00429 * 16 15 13 18 18 C 1.52997 * 109.47147 * 269.99772 * 16 15 13 19 19 C 1.50708 * 109.46889 * 149.99876 * 16 15 13 20 20 H 1.07995 * 119.99755 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99729 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99909 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.46921 * 60.00420 * 23 21 19 25 25 H 1.48496 * 109.46933 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46946 * 300.00103 * 23 21 19 27 27 H 1.08996 * 109.46787 * 269.95840 * 1 2 3 28 28 H 1.08994 * 109.47455 * 29.96380 * 1 2 3 29 29 H 1.09006 * 109.46887 * 149.96430 * 1 2 3 30 30 H 1.08004 * 127.07573 * 180.26966 * 11 4 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.46832 * 60.00119 * 18 16 15 33 33 H 1.09004 * 109.47261 * 300.00100 * 18 16 15 34 34 H 0.97002 * 119.99804 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0855 0.0000 4 6 3.5874 0.7420 -0.0006 5 6 4.7266 1.6858 -0.0013 6 7 6.0306 1.3691 -0.0014 7 7 6.6931 2.4757 -0.0015 8 7 5.8640 3.4603 -0.0021 9 1 6.1082 4.3991 -0.0019 10 7 4.6588 3.0040 -0.0080 11 6 3.6836 -0.6099 0.0055 12 6 2.3040 -1.1099 -0.0005 13 6 1.8685 -2.5168 -0.0003 14 8 0.6834 -2.7862 -0.0001 15 8 2.7842 -3.5057 -0.0004 16 6 2.2829 -4.8684 -0.0007 17 1 1.3223 -4.9019 -0.5148 18 6 2.1065 -5.3474 1.4416 19 6 3.2644 -5.7645 -0.7112 20 1 4.1741 -5.3513 -1.1210 21 6 3.0014 -7.1121 -0.8371 22 7 1.8938 -7.6153 -0.3376 23 14 4.2177 -8.2228 -1.7183 24 1 5.5268 -8.1766 -1.0189 25 1 3.7050 -9.6164 -1.7186 26 1 4.3877 -7.7581 -3.1185 27 1 -0.3633 -0.0007 1.0276 28 1 -0.3634 0.8902 -0.5132 29 1 -0.3633 -0.8897 -0.5144 30 1 4.5893 -1.1982 0.0108 31 1 1.7298 -6.3702 1.4413 32 1 1.3966 -4.6992 1.9554 33 1 3.0672 -5.3138 1.9556 34 1 1.7089 -8.5635 -0.4258 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606169397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = 30.146923 kcal Electronic energy + Delta-G solvation = -22306.314688 eV Core-core repulsion = 18629.666647 eV Total energy + Delta-G solvation = -3676.648041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.64038 -43.87085 -41.00931 -37.59117 -35.73018 -35.31183 -34.79425 -34.33426 -32.67009 -31.62933 -28.72014 -27.42953 -25.98760 -25.51258 -24.49582 -23.23812 -22.11051 -20.82520 -20.26532 -19.14281 -18.54201 -18.43391 -17.87428 -17.59793 -16.85709 -16.56053 -16.37570 -15.74686 -15.30284 -14.78781 -14.37245 -14.24956 -14.16673 -13.91577 -13.79153 -13.50349 -13.18643 -12.97762 -12.92041 -12.79091 -12.61332 -12.36347 -12.34584 -12.31379 -12.14672 -11.57865 -11.46896 -11.05652 -10.97154 -10.56836 -9.65266 -8.26461 -6.42809 -0.38241 0.01431 0.21269 0.86284 1.38811 1.41120 1.44330 1.47838 1.55605 1.95416 2.01644 2.41973 2.54399 3.04317 3.11633 3.49032 3.65053 3.73715 4.06763 4.20734 4.42580 4.45908 4.56265 4.61412 4.64669 4.82362 4.86425 4.98262 5.10395 5.20162 5.50085 5.50936 5.63682 5.68333 5.92075 6.08480 6.61054 6.93102 6.94911 7.28491 8.81102 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.003715 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.703987 B = 7536.131268 C = 8739.333511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.132 3.868 3 O -0.148 6.148 4 C 0.039 3.961 5 C 0.245 3.755 6 N -0.275 5.275 7 N -0.042 5.042 8 N -0.189 5.189 9 H 0.499 0.501 10 N -0.280 5.280 11 C -0.086 4.086 12 C -0.255 4.255 13 C 0.527 3.473 14 O -0.539 6.539 15 O -0.356 6.356 16 C 0.219 3.781 17 H 0.014 0.986 18 C -0.143 4.143 19 C -0.550 4.550 20 H 0.066 0.934 21 C 0.019 3.981 22 N -0.916 5.916 23 Si 0.981 3.019 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.269 1.269 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.177 0.823 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.043 0.957 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 23.175 1.199 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 O -0.042 6.042 4 C -0.011 4.011 5 C -0.034 4.034 6 N -0.148 5.148 7 N -0.037 5.037 8 N -0.041 5.041 9 H 0.360 0.640 10 N -0.133 5.133 11 C -0.108 4.108 12 C -0.257 4.257 13 C 0.374 3.626 14 O -0.432 6.432 15 O -0.273 6.273 16 C 0.166 3.834 17 H 0.032 0.968 18 C -0.200 4.200 19 C -0.588 4.588 20 H 0.084 0.916 21 C -0.181 4.181 22 N -0.553 5.553 23 Si 0.804 3.196 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.194 1.194 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.194 0.806 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.799 23.366 1.221 23.704 hybrid contribution 0.094 -0.625 -0.304 0.702 sum 3.893 22.741 0.917 23.090 Atomic orbital electron populations 1.20926 0.80397 1.06444 1.06366 1.23470 0.95070 0.81382 0.92325 1.83762 1.15006 1.34032 1.71441 1.17463 0.79937 0.89635 1.14105 1.21661 0.90372 0.87186 1.04177 1.76228 1.01462 1.18609 1.18530 1.78930 1.19825 0.90231 1.14679 1.47766 0.99768 1.13466 1.43110 0.64030 1.75105 1.06206 1.10732 1.21304 1.23032 0.97424 0.92075 0.98295 1.20273 0.94477 0.90671 1.20301 1.20275 0.83977 0.86212 0.72173 1.90731 1.18694 1.85185 1.48575 1.86553 1.39982 1.18368 1.82360 1.20395 0.94982 0.72973 0.95006 0.96830 1.21996 0.99339 1.02709 0.95998 1.21276 1.06641 0.93119 1.37749 0.91559 1.25786 0.97663 0.98759 0.95914 1.70002 1.25684 1.14400 1.45253 0.85259 0.78530 0.76933 0.78855 1.18942 1.20104 1.19392 0.86775 0.86365 0.88430 0.80554 0.89873 0.95477 0.93766 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.88 71.24 0.70 -1.04 16 2 C 0.13 3.61 7.37 25.31 0.19 3.79 16 3 O -0.15 -3.80 10.54 1.25 0.01 -3.79 16 4 C 0.04 1.08 7.22 24.22 0.17 1.25 16 5 C 0.25 6.07 8.20 137.12 1.12 7.19 16 6 N -0.27 -6.94 12.52 -52.40 -0.66 -7.60 16 7 N -0.04 -0.79 13.46 37.02 0.50 -0.29 16 8 N -0.19 -2.36 7.90 37.02 0.29 -2.07 16 9 H 0.50 0.62 8.96 -347.51 -3.12 -2.49 16 10 N -0.28 -5.41 12.41 -52.36 -0.65 -6.06 16 11 C -0.09 -2.67 10.95 23.87 0.26 -2.41 16 12 C -0.25 -8.79 6.31 -19.05 -0.12 -8.91 16 13 C 0.53 23.17 7.93 70.20 0.56 23.72 16 14 O -0.54 -25.13 14.09 19.74 0.28 -24.85 16 15 O -0.36 -17.85 9.77 -56.80 -0.56 -18.40 16 16 C 0.22 12.23 2.56 29.85 0.08 12.31 16 17 H 0.01 0.85 7.16 -2.39 -0.02 0.83 16 18 C -0.14 -7.43 9.33 71.98 0.67 -6.76 16 19 C -0.55 -31.72 8.90 25.60 0.23 -31.49 16 20 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 21 C 0.02 1.03 5.30 84.65 0.45 1.48 16 22 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 23 Si 0.98 43.28 29.54 68.60 2.03 45.30 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 2.46 6.47 -2.38 -0.02 2.45 16 30 H 0.18 5.41 8.06 -2.91 -0.02 5.39 16 31 H 0.08 4.61 6.07 -2.39 -0.01 4.59 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -72.04 312.22 3.87 -68.17 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -1.94 Total: 2.86 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 4.31 Total: -0.87 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.27 Total: -68.43 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.26 Total: -47.04 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.04 3.87 -68.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606169397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.321 kcal (2) G-P(sol) polarization free energy of solvation -72.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds