Wall clock time and date at job start Tue Mar 31 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33607 * 125.68111 * 2 1 4 4 C 1.34573 * 110.89262 * 179.97438 * 3 2 1 5 5 C 1.47936 * 125.57253 * 179.97438 * 4 3 2 6 6 N 1.34198 * 126.69528 * 180.02562 * 5 4 3 7 7 N 1.28987 * 107.24886 * 180.02562 * 6 5 4 8 8 N 1.28725 * 108.99015 * 0.02562 * 7 6 5 9 9 H 0.97004 * 125.31808 * 179.97438 * 8 7 6 10 10 N 1.28875 * 109.36208 * 359.72475 * 8 7 6 11 11 C 1.35536 * 108.85269 * 0.26752 * 4 3 2 12 12 C 1.36648 * 125.67331 * 179.97438 * 2 1 3 13 13 C 1.47284 * 127.12315 * 0.02562 * 12 2 1 14 14 O 1.21531 * 119.99754 * 359.97438 * 13 12 2 15 15 O 1.34763 * 120.00313 * 179.97438 * 13 12 2 16 16 C 1.45201 * 117.00251 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46999 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46711 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00443 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99633 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99928 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47054 * 60.00254 * 22 20 18 24 24 H 1.48499 * 109.47098 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47175 * 300.00403 * 22 20 18 26 26 H 1.09009 * 109.46760 * 0.03106 * 1 2 3 27 27 H 1.09008 * 109.47287 * 120.02208 * 1 2 3 28 28 H 1.08994 * 109.47588 * 240.02914 * 1 2 3 29 29 H 1.08003 * 127.07413 * 179.73772 * 11 4 3 30 30 H 1.09001 * 109.47074 * 300.00364 * 16 15 13 31 31 H 1.09005 * 109.46768 * 60.00053 * 16 15 13 32 32 H 1.08999 * 109.47197 * 300.00317 * 17 16 15 33 33 H 1.09003 * 109.46618 * 60.00414 * 17 16 15 34 34 H 0.97007 * 119.99926 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0853 0.0000 4 6 3.5875 0.7418 0.0006 5 6 4.7267 1.6855 0.0002 6 7 6.0307 1.3685 0.0003 7 7 6.6934 2.4751 0.0004 8 7 5.8643 3.4598 0.0010 9 1 6.1086 4.3986 0.0015 10 7 4.6590 3.0036 -0.0046 11 6 3.6835 -0.6102 -0.0050 12 6 2.3039 -1.1101 0.0005 13 6 1.8683 -2.5170 0.0006 14 8 0.6831 -2.7861 0.0007 15 8 2.7838 -3.5059 0.0006 16 6 2.2823 -4.8686 0.0013 17 6 3.4599 -5.8454 0.0005 18 6 2.9394 -7.2596 0.0006 19 1 1.8752 -7.4434 0.0016 20 6 3.8220 -8.3190 0.0005 21 7 5.1178 -8.0952 0.0009 22 14 3.1768 -10.0720 0.0013 23 1 2.3484 -10.2952 -1.2107 24 1 4.3197 -11.0201 0.0017 25 1 2.3493 -10.2944 1.2142 26 1 -0.3633 1.0278 -0.0006 27 1 -0.3634 -0.5142 -0.8898 28 1 -0.3634 -0.5133 0.8902 29 1 4.5892 -1.1985 -0.0101 30 1 1.6749 -5.0318 0.8915 31 1 1.6743 -5.0324 -0.8885 32 1 4.0669 -5.6820 -0.8899 33 1 4.0683 -5.6816 0.8901 34 1 5.7388 -8.8406 0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606171277.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:08 Heat of formation + Delta-G solvation = 46.582105 kcal Electronic energy + Delta-G solvation = -21720.924297 eV Core-core repulsion = 18044.988939 eV Total energy + Delta-G solvation = -3675.935358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.84579 -42.88621 -39.64759 -36.10987 -34.90786 -33.96201 -33.44677 -33.21139 -31.82343 -30.24933 -27.86105 -25.42503 -24.97117 -24.10722 -23.26998 -21.70686 -20.76843 -19.88118 -19.35559 -18.03189 -17.62548 -16.79268 -16.67819 -15.97205 -15.71228 -15.61997 -14.87454 -14.47263 -14.42607 -13.43650 -13.38318 -13.26515 -13.07310 -12.71842 -12.66357 -12.33957 -12.12493 -11.81250 -11.52118 -11.49715 -11.22030 -11.03864 -10.72009 -10.70227 -10.33042 -10.01249 -9.62217 -9.60947 -9.29053 -8.70564 -8.41271 -6.07405 -4.11912 0.47549 0.89091 1.25610 1.67228 2.11750 2.34777 3.09920 3.20977 3.32166 3.36249 3.38561 3.42999 3.96505 4.39038 4.41163 4.63916 4.81252 4.95451 5.10797 5.27523 5.29013 5.32160 5.40323 5.58667 5.83156 5.96193 6.00749 6.11435 6.11878 6.62803 6.66342 6.95560 7.58630 7.66011 7.73579 7.89200 8.19350 8.27972 8.93438 9.52235 11.04024 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.003013 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.936860 B = 9290.310615 C =10656.496657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.111 3.889 3 O -0.155 6.155 4 C 0.034 3.966 5 C 0.259 3.741 6 N -0.247 5.247 7 N -0.040 5.040 8 N -0.225 5.225 9 H 0.478 0.522 10 N -0.285 5.285 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.534 3.466 14 O -0.516 6.516 15 O -0.347 6.347 16 C 0.077 3.923 17 C 0.024 3.976 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.181 0.819 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 25.104 -0.002 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 O -0.051 6.051 4 C -0.017 4.017 5 C -0.020 4.020 6 N -0.121 5.121 7 N -0.035 5.035 8 N -0.071 5.071 9 H 0.333 0.667 10 N -0.137 5.137 11 C -0.098 4.098 12 C -0.228 4.228 13 C 0.379 3.621 14 O -0.408 6.408 15 O -0.263 6.263 16 C 0.004 3.996 17 C -0.013 4.013 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.198 0.802 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.415 25.350 -0.006 25.465 hybrid contribution -0.474 -0.630 0.000 0.788 sum -2.889 24.721 -0.006 24.889 Atomic orbital electron populations 1.20637 0.82622 1.04165 1.05950 1.22997 0.94090 0.82311 0.94996 1.83739 1.15208 1.34445 1.71667 1.17442 0.79500 0.89872 1.14880 1.21803 0.90708 0.86681 1.02841 1.76249 1.01142 1.17355 1.17372 1.79001 1.19880 0.90193 1.14457 1.47710 1.00912 1.12658 1.45816 0.66745 1.75138 1.05197 1.11659 1.21720 1.23107 0.97960 0.91456 0.97264 1.20340 0.93070 0.91853 1.17534 1.19746 0.84131 0.85197 0.73004 1.90807 1.17980 1.84846 1.47125 1.86603 1.39211 1.17934 1.82551 1.23691 1.00201 0.74635 1.01047 1.19172 0.92019 0.91099 0.98986 1.20936 0.93206 0.90033 1.52361 0.92299 1.24980 0.94796 0.99463 0.94889 1.69964 1.01285 1.31884 1.49624 0.86535 0.78333 0.83678 0.78755 1.20080 1.21148 1.20086 0.89984 0.87832 0.87829 0.80185 0.92160 0.92164 0.95270 0.95269 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.13 36.01 0.33 -0.37 16 2 C 0.11 1.34 7.37 -34.88 -0.26 1.08 16 3 O -0.16 -1.89 10.54 6.79 0.07 -1.82 16 4 C 0.03 0.43 7.22 -36.58 -0.26 0.17 16 5 C 0.26 3.13 8.20 -156.26 -1.28 1.85 16 6 N -0.25 -3.07 12.52 32.08 0.40 -2.67 16 7 N -0.04 -0.40 13.47 60.35 0.81 0.42 16 8 N -0.22 -1.55 7.90 60.35 0.48 -1.08 16 9 H 0.48 0.78 8.96 -340.32 -3.05 -2.27 16 10 N -0.28 -2.85 12.41 32.10 0.40 -2.46 16 11 C -0.08 -1.03 10.95 -37.11 -0.41 -1.43 16 12 C -0.23 -3.30 6.31 -103.36 -0.65 -3.96 16 13 C 0.53 9.54 7.96 34.41 0.27 9.82 16 14 O -0.52 -9.71 15.43 -19.29 -0.30 -10.00 16 15 O -0.35 -7.05 10.13 -40.66 -0.41 -7.46 16 16 C 0.08 1.70 5.41 37.16 0.20 1.90 16 17 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 18 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 22 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 27 H 0.10 0.93 8.08 -51.92 -0.42 0.51 16 28 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.18 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -33.74 318.92 -6.61 -40.35 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: -5.97 Total: -6.83 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.62 Total: -3.95 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 2.83 Total: -31.51 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.64 Total: -19.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.74 -6.61 -40.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606171277.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.935 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds