Wall clock time and date at job start Tue Mar 31 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33607 * 125.68111 * 2 1 4 4 C 1.34573 * 110.89262 * 179.97438 * 3 2 1 5 5 C 1.47936 * 125.57253 * 179.97438 * 4 3 2 6 6 N 1.34198 * 126.69528 * 180.02562 * 5 4 3 7 7 N 1.28987 * 107.24886 * 180.02562 * 6 5 4 8 8 N 1.28725 * 108.99015 * 0.02562 * 7 6 5 9 9 H 0.97004 * 125.31808 * 179.97438 * 8 7 6 10 10 N 1.28875 * 109.36208 * 359.72475 * 8 7 6 11 11 C 1.35536 * 108.85269 * 0.26752 * 4 3 2 12 12 C 1.36648 * 125.67331 * 179.97438 * 2 1 3 13 13 C 1.47284 * 127.12315 * 0.02562 * 12 2 1 14 14 O 1.21531 * 119.99754 * 359.97438 * 13 12 2 15 15 O 1.34763 * 120.00313 * 179.97438 * 13 12 2 16 16 C 1.45201 * 117.00251 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.46999 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46711 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00443 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99633 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99928 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47054 * 60.00254 * 22 20 18 24 24 H 1.48499 * 109.47098 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47175 * 300.00403 * 22 20 18 26 26 H 1.09009 * 109.46760 * 0.03106 * 1 2 3 27 27 H 1.09008 * 109.47287 * 120.02208 * 1 2 3 28 28 H 1.08994 * 109.47588 * 240.02914 * 1 2 3 29 29 H 1.08003 * 127.07413 * 179.73772 * 11 4 3 30 30 H 1.09001 * 109.47074 * 300.00364 * 16 15 13 31 31 H 1.09005 * 109.46768 * 60.00053 * 16 15 13 32 32 H 1.08999 * 109.47197 * 300.00317 * 17 16 15 33 33 H 1.09003 * 109.46618 * 60.00414 * 17 16 15 34 34 H 0.97007 * 119.99926 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2863 1.0853 0.0000 4 6 3.5875 0.7418 0.0006 5 6 4.7267 1.6855 0.0002 6 7 6.0307 1.3685 0.0003 7 7 6.6934 2.4751 0.0004 8 7 5.8643 3.4598 0.0010 9 1 6.1086 4.3986 0.0015 10 7 4.6590 3.0036 -0.0046 11 6 3.6835 -0.6102 -0.0050 12 6 2.3039 -1.1101 0.0005 13 6 1.8683 -2.5170 0.0006 14 8 0.6831 -2.7861 0.0007 15 8 2.7838 -3.5059 0.0006 16 6 2.2823 -4.8686 0.0013 17 6 3.4599 -5.8454 0.0005 18 6 2.9394 -7.2596 0.0006 19 1 1.8752 -7.4434 0.0016 20 6 3.8220 -8.3190 0.0005 21 7 5.1178 -8.0952 0.0009 22 14 3.1768 -10.0720 0.0013 23 1 2.3484 -10.2952 -1.2107 24 1 4.3197 -11.0201 0.0017 25 1 2.3493 -10.2944 1.2142 26 1 -0.3633 1.0278 -0.0006 27 1 -0.3634 -0.5142 -0.8898 28 1 -0.3634 -0.5133 0.8902 29 1 4.5892 -1.1985 -0.0101 30 1 1.6749 -5.0318 0.8915 31 1 1.6743 -5.0324 -0.8885 32 1 4.0669 -5.6820 -0.8899 33 1 4.0683 -5.6816 0.8901 34 1 5.7388 -8.8406 0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606171277.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:08 Heat of formation + Delta-G solvation = 24.097725 kcal Electronic energy + Delta-G solvation = -21721.899293 eV Core-core repulsion = 18044.988939 eV Total energy + Delta-G solvation = -3676.910354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.65023 -43.90692 -41.15449 -37.68150 -35.74040 -35.42266 -34.81135 -34.41074 -32.71132 -32.24965 -28.82685 -27.20321 -25.88584 -25.29297 -24.36868 -23.07363 -22.45188 -20.93272 -20.29436 -19.24989 -18.48717 -18.45597 -17.77701 -17.75936 -17.19497 -16.84571 -16.43012 -15.89586 -15.31740 -15.01122 -14.44207 -14.38072 -14.23924 -14.16999 -13.95207 -13.50700 -13.11776 -13.03177 -12.93335 -12.62729 -12.56761 -12.55593 -12.36002 -12.32839 -11.91556 -11.53714 -11.44967 -11.39015 -11.08420 -10.58330 -9.68170 -8.24302 -6.37723 -0.39565 -0.02468 0.16687 0.84700 1.36040 1.38588 1.43160 1.46858 1.54456 1.72155 1.90546 2.41835 2.51136 3.10097 3.10252 3.46220 3.60043 3.61495 4.04517 4.15942 4.27062 4.28618 4.39929 4.44182 4.61664 4.62068 4.73375 4.95201 5.11348 5.26863 5.49076 5.49557 5.52222 5.64143 5.76192 6.08656 6.69977 6.76717 6.92048 7.31950 8.88213 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.003013 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.936860 B = 9290.310615 C =10656.496657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.138 3.862 3 O -0.148 6.148 4 C 0.040 3.960 5 C 0.243 3.757 6 N -0.276 5.276 7 N -0.042 5.042 8 N -0.189 5.189 9 H 0.499 0.501 10 N -0.280 5.280 11 C -0.087 4.087 12 C -0.257 4.257 13 C 0.535 3.465 14 O -0.527 6.527 15 O -0.360 6.360 16 C 0.093 3.907 17 C 0.030 3.970 18 C -0.550 4.550 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.974 3.026 23 H -0.265 1.265 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.176 0.824 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 26.406 -0.002 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 O -0.042 6.042 4 C -0.011 4.011 5 C -0.036 4.036 6 N -0.150 5.150 7 N -0.037 5.037 8 N -0.041 5.041 9 H 0.360 0.640 10 N -0.133 5.133 11 C -0.110 4.110 12 C -0.259 4.259 13 C 0.382 3.618 14 O -0.419 6.419 15 O -0.277 6.277 16 C 0.020 3.980 17 C -0.007 4.007 18 C -0.587 4.587 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.797 3.203 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.190 1.190 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.193 0.807 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.736 26.697 -0.005 26.958 hybrid contribution -0.026 -0.808 0.000 0.808 sum -3.762 25.889 -0.006 26.161 Atomic orbital electron populations 1.20859 0.80096 1.06496 1.06066 1.23525 0.95143 0.81324 0.91743 1.83781 1.14997 1.34189 1.71283 1.17454 0.79888 0.89674 1.14088 1.21721 0.90440 0.87241 1.04195 1.76246 1.01541 1.18626 1.18545 1.78949 1.19848 0.90255 1.14682 1.47779 0.99783 1.13472 1.43076 0.64030 1.75093 1.06196 1.10758 1.21295 1.23061 0.97605 0.92076 0.98230 1.20176 0.94212 0.90630 1.20917 1.20126 0.83692 0.85697 0.72297 1.90786 1.18161 1.85093 1.47907 1.86580 1.40191 1.17568 1.83314 1.23220 0.98134 0.75298 1.01386 1.18985 0.92886 0.92230 0.96633 1.21354 0.93837 0.91059 1.52491 0.91419 1.25984 0.94923 1.04372 0.94110 1.70099 1.02733 1.33472 1.50384 0.85368 0.77907 0.77620 0.79364 1.18958 1.20642 1.18972 0.86632 0.87531 0.87526 0.80660 0.91728 0.91735 0.97636 0.97638 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.13 71.24 0.65 -0.57 16 2 C 0.14 3.12 7.37 25.31 0.19 3.31 16 3 O -0.15 -3.34 10.54 1.38 0.01 -3.33 16 4 C 0.04 0.98 7.22 24.22 0.17 1.16 16 5 C 0.24 5.66 8.20 137.12 1.12 6.79 16 6 N -0.28 -6.76 12.52 -52.41 -0.66 -7.41 16 7 N -0.04 -0.78 13.47 37.02 0.50 -0.29 16 8 N -0.19 -2.22 7.90 37.02 0.29 -1.93 16 9 H 0.50 0.30 8.96 -347.50 -3.11 -2.81 16 10 N -0.28 -5.07 12.41 -52.36 -0.65 -5.72 16 11 C -0.09 -2.42 10.95 23.87 0.26 -2.16 16 12 C -0.26 -7.50 6.31 -19.05 -0.12 -7.62 16 13 C 0.53 19.29 7.96 70.20 0.56 19.84 16 14 O -0.53 -19.65 15.43 19.74 0.30 -19.34 16 15 O -0.36 -15.06 10.13 -56.74 -0.57 -15.64 16 16 C 0.09 4.20 5.41 71.98 0.39 4.59 16 17 C 0.03 1.63 5.35 29.85 0.16 1.79 16 18 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 19 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 20 C 0.01 0.29 5.46 84.66 0.46 0.75 16 21 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 22 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.11 1.67 8.08 -2.38 -0.02 1.65 16 28 H 0.11 1.67 8.08 -2.39 -0.02 1.66 16 29 H 0.18 4.91 8.06 -2.91 -0.02 4.88 16 30 H 0.06 2.84 8.14 -2.39 -0.02 2.83 16 31 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -73.09 318.92 3.67 -69.42 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -1.95 Total: -2.40 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 4.08 Total: -3.21 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.23 Total: -71.32 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.26 Total: -38.30 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -73.09 3.67 -69.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606171277.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.515 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds