Wall clock time and date at job start Tue Mar 31 2020 06:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39654 * 120.13434 * 137.75846 * 3 2 1 5 5 C 1.37941 * 119.89516 * 179.72375 * 4 3 2 6 6 C 1.38349 * 120.17716 * 0.50193 * 5 4 3 7 7 C 1.50698 * 119.85570 * 179.76582 * 6 5 4 8 8 N 1.46500 * 109.47474 * 258.16012 * 7 6 5 9 9 C 1.36938 * 119.99922 * 80.19714 * 8 7 6 10 10 H 1.08002 * 120.00220 * 182.96523 * 9 8 7 11 11 C 1.38808 * 119.99813 * 2.96955 * 9 8 7 12 12 N 1.31621 * 120.00651 * 37.44633 * 11 9 8 13 13 Si 1.86801 * 119.99922 * 217.45108 * 11 9 8 14 14 H 1.48504 * 109.47015 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47600 * 119.99787 * 13 11 9 16 16 H 1.48506 * 109.47216 * 240.00060 * 13 11 9 17 17 C 1.46499 * 120.00390 * 259.92730 * 8 7 6 18 18 C 1.53002 * 109.47086 * 101.16427 * 17 8 7 19 19 C 1.50704 * 109.46917 * 175.39872 * 18 17 8 20 20 O 1.20823 * 120.00272 * 359.97438 * 19 18 17 21 21 O 1.34228 * 119.99636 * 180.02562 * 19 18 17 22 22 C 1.38551 * 120.28075 * 359.49422 * 6 5 4 23 23 F 1.35104 * 119.95048 * 180.27388 * 22 6 5 24 24 C 1.38195 * 120.09950 * 0.24993 * 22 6 5 25 25 H 1.08001 * 120.05368 * 359.97047 * 4 3 2 26 26 H 1.08002 * 119.91228 * 180.24707 * 5 4 3 27 27 H 1.09005 * 109.47190 * 138.16566 * 7 6 5 28 28 H 1.08999 * 109.47519 * 18.16621 * 7 6 5 29 29 H 0.96996 * 120.00574 * 183.82674 * 12 11 9 30 30 H 1.08992 * 109.47397 * 221.16616 * 17 8 7 31 31 H 1.09004 * 109.46970 * 341.17037 * 17 8 7 32 32 H 1.09004 * 109.47258 * 295.39606 * 18 17 8 33 33 H 1.08998 * 109.47441 * 55.39827 * 18 17 8 34 34 H 0.96708 * 116.99747 * 179.97438 * 21 19 18 35 35 H 1.08002 * 120.08921 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.8951 -0.8120 5 6 4.6481 0.8953 -0.8038 6 6 5.3389 0.0050 -0.0014 7 6 6.8459 0.0079 -0.0021 8 7 7.3361 -1.1061 -0.8174 9 6 7.3732 -0.9919 -2.1815 10 1 7.6892 -1.8299 -2.7852 11 6 7.0046 0.2008 -2.7883 12 7 7.3187 1.3493 -2.2273 13 14 6.0627 0.1761 -4.4013 14 1 5.8353 -1.2304 -4.8202 15 1 4.7553 0.8571 -4.2216 16 1 6.8491 0.8819 -5.4447 17 6 7.7923 -2.3402 -0.1731 18 6 6.6961 -3.4030 -0.2729 19 6 7.2064 -4.7051 0.2886 20 8 8.3314 -4.7760 0.7234 21 8 6.4112 -5.7864 0.3046 22 6 4.6512 -0.8856 0.8071 23 9 5.3326 -1.7484 1.5922 24 6 3.2693 -0.8922 0.8119 25 1 2.7314 1.5883 -1.4423 26 1 5.1902 1.5897 -1.4286 27 1 7.2100 -0.1018 1.0195 28 1 7.2072 0.9487 -0.4174 29 1 7.0135 2.1813 -2.6216 30 1 8.6927 -2.6990 -0.6716 31 1 8.0122 -2.1425 0.8761 32 1 5.8237 -3.0795 0.2949 33 1 6.4186 -3.5417 -1.3177 34 1 6.7828 -6.5992 0.6742 35 1 2.7334 -1.5868 1.4419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:42 Heat of formation + Delta-G solvation = -53.270763 kcal Electronic energy + Delta-G solvation = -23461.273601 eV Core-core repulsion = 19761.088336 eV Total energy + Delta-G solvation = -3700.185265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.62249 -39.89369 -39.02280 -36.71879 -36.03245 -35.62434 -32.48163 -31.59958 -30.38750 -29.57638 -26.41151 -25.00460 -22.90582 -22.38663 -21.14108 -20.10452 -18.96063 -17.84485 -17.22719 -16.38680 -16.17089 -15.83402 -15.69263 -15.21299 -15.10363 -14.75467 -13.78579 -13.72528 -13.63456 -13.49270 -13.39213 -13.16112 -12.75244 -12.62715 -12.36549 -11.91963 -11.58511 -11.43540 -11.30438 -11.18735 -11.02462 -10.80030 -10.63073 -10.29874 -10.25788 -10.14042 -9.96085 -8.86540 -8.57378 -8.24349 -7.23840 -6.03973 -3.36036 0.97830 1.50496 2.55202 2.72882 3.10311 3.24139 3.38195 3.40069 3.44224 3.92669 4.04334 4.36858 4.72056 4.94489 5.05754 5.20411 5.32028 5.47583 5.55320 5.65997 5.68474 5.94196 6.02580 6.15701 6.23450 6.34138 6.44144 6.47143 6.65443 6.68765 6.83570 6.96747 7.17729 7.48919 7.55409 7.58696 8.08346 8.19442 8.88111 9.56897 9.98226 10.89828 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.007808 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.570511 B = 3585.324146 C = 5195.143025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.269 3.731 3 C -0.033 4.033 4 C -0.085 4.085 5 C -0.075 4.075 6 C -0.059 4.059 7 C 0.143 3.857 8 N -0.575 5.575 9 C -0.252 4.252 10 H 0.082 0.918 11 C 0.008 3.992 12 N -0.872 5.872 13 Si 0.868 3.132 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.292 1.292 17 C 0.163 3.837 18 C -0.148 4.148 19 C 0.481 3.519 20 O -0.525 6.525 21 O -0.524 6.524 22 C 0.088 3.912 23 F -0.134 7.134 24 C -0.114 4.114 25 H 0.128 0.872 26 H 0.153 0.847 27 H 0.041 0.959 28 H 0.145 0.855 29 H 0.257 0.743 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -3.786 5.291 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.046 4.046 3 C -0.037 4.037 4 C -0.106 4.106 5 C -0.094 4.094 6 C -0.064 4.064 7 C 0.017 3.983 8 N -0.293 5.293 9 C -0.380 4.380 10 H 0.099 0.901 11 C -0.190 4.190 12 N -0.517 5.517 13 Si 0.696 3.304 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.220 1.220 17 C 0.036 3.964 18 C -0.188 4.188 19 C 0.325 3.675 20 O -0.413 6.413 21 O -0.335 6.335 22 C 0.068 3.932 23 F -0.112 7.112 24 C -0.136 4.136 25 H 0.146 0.854 26 H 0.171 0.829 27 H 0.059 0.941 28 H 0.161 0.839 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.257 0.743 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.079 -3.314 5.172 7.970 hybrid contribution -0.066 -0.939 -0.559 1.095 sum -5.145 -4.253 4.613 8.114 Atomic orbital electron populations 1.81202 1.12096 1.08818 1.09028 1.25702 0.92599 0.93159 0.93123 1.15551 0.83925 1.01421 1.02794 1.21269 0.94809 0.97314 0.97162 1.21357 0.92314 0.98385 0.97332 1.21473 1.01278 0.91664 0.91942 1.20852 0.85343 0.98057 0.94007 1.44108 1.70794 1.10735 1.03617 1.19248 1.39889 0.97694 0.81156 0.90055 1.24383 1.02358 0.94441 0.97863 1.69995 1.42906 0.96958 1.41825 0.86759 0.81205 0.78115 0.84314 1.20220 1.20818 1.21958 1.20632 0.93249 0.85270 0.97249 1.22571 1.04267 0.88562 1.03415 1.24102 0.83122 0.85647 0.74669 1.90669 1.20797 1.85140 1.44736 1.84629 1.49094 1.22175 1.77640 1.17405 0.88920 0.92271 0.94609 1.91391 1.79981 1.67497 1.72366 1.20874 0.92570 0.99767 1.00361 0.85356 0.82918 0.94083 0.83899 0.93226 0.92612 0.92631 0.87338 0.87804 0.74271 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.05 18.54 41.84 0.78 -6.28 16 2 C 0.27 3.96 15.33 -22.47 -0.34 3.61 16 3 C -0.03 -0.47 5.73 -106.94 -0.61 -1.08 16 4 C -0.08 -1.26 9.75 -39.16 -0.38 -1.64 16 5 C -0.07 -1.28 8.75 -39.65 -0.35 -1.63 16 6 C -0.06 -1.04 5.26 -104.47 -0.55 -1.59 16 7 C 0.14 2.84 5.07 -5.19 -0.03 2.81 16 8 N -0.58 -12.11 2.58 -174.61 -0.45 -12.56 16 9 C -0.25 -5.89 9.38 -15.06 -0.14 -6.03 16 10 H 0.08 1.93 8.04 -52.49 -0.42 1.51 16 11 C 0.01 0.18 3.74 -17.43 -0.07 0.11 16 12 N -0.87 -20.41 9.00 55.49 0.50 -19.91 16 13 Si 0.87 18.89 29.68 -169.99 -5.05 13.84 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 17 C 0.16 3.09 4.81 -4.04 -0.02 3.07 16 18 C -0.15 -2.48 5.96 -27.88 -0.17 -2.65 16 19 C 0.48 7.63 8.33 36.01 0.30 7.93 16 20 O -0.52 -9.57 16.68 -18.75 -0.31 -9.88 16 21 O -0.52 -6.71 13.42 -39.25 -0.53 -7.24 16 22 C 0.09 1.41 6.74 -39.48 -0.27 1.14 16 23 F -0.13 -2.15 13.66 2.25 0.03 -2.12 16 24 C -0.11 -1.61 9.73 -39.10 -0.38 -1.99 16 25 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 26 H 0.15 2.83 5.92 -52.49 -0.31 2.51 16 27 H 0.04 0.76 7.54 -51.93 -0.39 0.37 16 28 H 0.14 3.16 4.82 -51.93 -0.25 2.91 16 29 H 0.26 5.77 8.23 -40.82 -0.34 5.43 16 30 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 31 H 0.06 1.03 7.70 -51.93 -0.40 0.63 16 32 H 0.11 1.80 4.65 -51.93 -0.24 1.56 16 33 H 0.10 1.79 8.05 -51.93 -0.42 1.37 16 34 H 0.40 3.23 9.10 45.56 0.41 3.64 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -26.19 311.60 -5.74 -31.93 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -2.41 Total: 5.46 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.00 Total: 2.06 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.82 Total: -38.75 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.84 Total: -17.12 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.03 Total: -2.12 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.05 Total: 13.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.19 -5.74 -31.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.340 kcal (2) G-P(sol) polarization free energy of solvation -26.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds