Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39654 * 120.13434 * 137.75846 * 3 2 1 5 5 C 1.37941 * 119.89516 * 179.72375 * 4 3 2 6 6 C 1.38349 * 120.17716 * 0.50193 * 5 4 3 7 7 C 1.50698 * 119.85570 * 179.76582 * 6 5 4 8 8 N 1.46500 * 109.47474 * 258.16012 * 7 6 5 9 9 C 1.36938 * 119.99922 * 80.19714 * 8 7 6 10 10 H 1.08002 * 120.00220 * 182.96523 * 9 8 7 11 11 C 1.38808 * 119.99813 * 2.96955 * 9 8 7 12 12 N 1.31621 * 120.00651 * 37.44633 * 11 9 8 13 13 Si 1.86801 * 119.99922 * 217.45108 * 11 9 8 14 14 H 1.48504 * 109.47015 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47600 * 119.99787 * 13 11 9 16 16 H 1.48506 * 109.47216 * 240.00060 * 13 11 9 17 17 C 1.46499 * 120.00390 * 259.92730 * 8 7 6 18 18 C 1.53002 * 109.47086 * 101.16427 * 17 8 7 19 19 C 1.50704 * 109.46917 * 175.39872 * 18 17 8 20 20 O 1.20823 * 120.00272 * 359.97438 * 19 18 17 21 21 O 1.34228 * 119.99636 * 180.02562 * 19 18 17 22 22 C 1.38551 * 120.28075 * 359.49422 * 6 5 4 23 23 F 1.35104 * 119.95048 * 180.27388 * 22 6 5 24 24 C 1.38195 * 120.09950 * 0.24993 * 22 6 5 25 25 H 1.08001 * 120.05368 * 359.97047 * 4 3 2 26 26 H 1.08002 * 119.91228 * 180.24707 * 5 4 3 27 27 H 1.09005 * 109.47190 * 138.16566 * 7 6 5 28 28 H 1.08999 * 109.47519 * 18.16621 * 7 6 5 29 29 H 0.96996 * 120.00574 * 183.82674 * 12 11 9 30 30 H 1.08992 * 109.47397 * 221.16616 * 17 8 7 31 31 H 1.09004 * 109.46970 * 341.17037 * 17 8 7 32 32 H 1.09004 * 109.47258 * 295.39606 * 18 17 8 33 33 H 1.08998 * 109.47441 * 55.39827 * 18 17 8 34 34 H 0.96708 * 116.99747 * 179.97438 * 21 19 18 35 35 H 1.08002 * 120.08921 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.8951 -0.8120 5 6 4.6481 0.8953 -0.8038 6 6 5.3389 0.0050 -0.0014 7 6 6.8459 0.0079 -0.0021 8 7 7.3361 -1.1061 -0.8174 9 6 7.3732 -0.9919 -2.1815 10 1 7.6892 -1.8299 -2.7852 11 6 7.0046 0.2008 -2.7883 12 7 7.3187 1.3493 -2.2273 13 14 6.0627 0.1761 -4.4013 14 1 5.8353 -1.2304 -4.8202 15 1 4.7553 0.8571 -4.2216 16 1 6.8491 0.8819 -5.4447 17 6 7.7923 -2.3402 -0.1731 18 6 6.6961 -3.4030 -0.2729 19 6 7.2064 -4.7051 0.2886 20 8 8.3314 -4.7760 0.7234 21 8 6.4112 -5.7864 0.3046 22 6 4.6512 -0.8856 0.8071 23 9 5.3326 -1.7484 1.5922 24 6 3.2693 -0.8922 0.8119 25 1 2.7314 1.5883 -1.4423 26 1 5.1902 1.5897 -1.4286 27 1 7.2100 -0.1018 1.0195 28 1 7.2072 0.9487 -0.4174 29 1 7.0135 2.1813 -2.6216 30 1 8.6927 -2.6990 -0.6716 31 1 8.0122 -2.1425 0.8761 32 1 5.8237 -3.0795 0.2949 33 1 6.4186 -3.5417 -1.3177 34 1 6.7828 -6.5992 0.6742 35 1 2.7334 -1.5868 1.4419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -66.425276 kcal Electronic energy + Delta-G solvation = -23461.844023 eV Core-core repulsion = 19761.088336 eV Total energy + Delta-G solvation = -3700.755687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.87461 -41.14940 -40.29072 -38.12665 -37.27730 -36.92902 -34.05366 -33.03910 -31.64194 -31.02612 -27.91931 -26.54439 -24.25745 -23.63614 -22.53368 -21.54048 -20.19638 -19.13332 -18.79154 -17.71010 -17.42096 -17.16462 -16.92064 -16.51530 -16.45144 -16.34981 -15.28127 -15.19703 -14.97715 -14.82460 -14.67241 -14.42477 -14.12094 -13.91370 -13.69226 -13.30093 -13.07049 -12.81046 -12.73668 -12.62746 -12.47310 -12.25963 -12.11844 -11.92277 -11.81514 -11.61226 -11.51364 -10.52265 -9.83405 -9.55118 -8.93002 -7.77711 -5.12902 -0.25132 0.28418 1.28999 1.50450 1.54733 1.62050 1.66636 1.87438 2.22193 2.63188 2.70666 2.82719 3.20105 3.48717 3.79496 3.91069 4.02646 4.11901 4.22827 4.25744 4.39739 4.64330 4.76524 4.80815 4.85145 5.00693 5.07879 5.12932 5.27983 5.36973 5.60370 5.67306 5.78446 5.83754 5.92851 6.37802 6.41447 7.08112 7.16379 7.87248 8.27562 9.13664 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.007808 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.570511 B = 3585.324146 C = 5195.143025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.288 3.712 3 C -0.022 4.022 4 C -0.076 4.076 5 C -0.087 4.087 6 C -0.071 4.071 7 C 0.146 3.854 8 N -0.586 5.586 9 C -0.263 4.263 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.885 5.885 13 Si 0.905 3.095 14 H -0.283 1.283 15 H -0.273 1.273 16 H -0.305 1.305 17 C 0.167 3.833 18 C -0.139 4.139 19 C 0.492 3.508 20 O -0.552 6.552 21 O -0.514 6.514 22 C 0.084 3.916 23 F -0.135 7.135 24 C -0.097 4.097 25 H 0.149 0.851 26 H 0.137 0.863 27 H 0.045 0.955 28 H 0.122 0.878 29 H 0.257 0.743 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.424 0.576 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 -4.656 5.906 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.026 4.026 3 C -0.026 4.026 4 C -0.097 4.097 5 C -0.106 4.106 6 C -0.076 4.076 7 C 0.020 3.980 8 N -0.304 5.304 9 C -0.392 4.392 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.531 5.531 13 Si 0.734 3.266 14 H -0.209 1.209 15 H -0.199 1.199 16 H -0.233 1.233 17 C 0.040 3.960 18 C -0.178 4.178 19 C 0.336 3.664 20 O -0.443 6.443 21 O -0.327 6.327 22 C 0.064 3.936 23 F -0.113 7.113 24 C -0.119 4.119 25 H 0.167 0.833 26 H 0.154 0.846 27 H 0.063 0.937 28 H 0.138 0.862 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.285 0.715 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.942 -4.211 5.808 9.983 hybrid contribution 0.500 -0.700 -0.706 1.112 sum -6.443 -4.911 5.102 9.574 Atomic orbital electron populations 1.81244 1.12722 1.09500 1.09714 1.25507 0.92236 0.92456 0.92419 1.15496 0.83671 1.01059 1.02419 1.21400 0.93870 0.97394 0.97002 1.21214 0.93266 0.98587 0.97551 1.21237 1.00015 0.93018 0.93303 1.20661 0.87068 0.96599 0.93651 1.44177 1.71602 1.11606 1.03021 1.19286 1.40208 0.97342 0.82322 0.91190 1.24653 1.02859 0.94347 0.99181 1.70069 1.43434 0.97090 1.42482 0.86218 0.80731 0.77367 0.82288 1.20879 1.19854 1.23343 1.20551 0.93364 0.85313 0.96755 1.22284 1.03383 0.88806 1.03372 1.23707 0.82629 0.86039 0.73982 1.90671 1.21929 1.85674 1.46039 1.84546 1.48289 1.22581 1.77305 1.17366 0.89568 0.92084 0.94563 1.91387 1.80169 1.67440 1.72320 1.21082 0.91668 0.99416 0.99695 0.83308 0.84559 0.93663 0.86178 0.93180 0.94359 0.92511 0.86722 0.88234 0.71481 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.48 18.54 19.00 0.35 -13.13 16 2 C 0.29 7.55 15.33 88.33 1.35 8.91 16 3 C -0.02 -0.57 5.73 -21.37 -0.12 -0.69 16 4 C -0.08 -2.07 9.75 22.54 0.22 -1.85 16 5 C -0.09 -2.90 8.75 22.23 0.19 -2.70 16 6 C -0.07 -2.47 5.26 -19.76 -0.10 -2.57 16 7 C 0.15 5.81 5.07 85.63 0.43 6.25 16 8 N -0.59 -24.88 2.58 -706.34 -1.82 -26.71 16 9 C -0.26 -12.45 9.38 84.03 0.79 -11.66 16 10 H 0.07 3.39 8.04 -2.91 -0.02 3.37 16 11 C -0.01 -0.61 3.74 84.86 0.32 -0.29 16 12 N -0.89 -42.00 9.00 21.65 0.19 -41.81 16 13 Si 0.90 38.68 29.68 68.60 2.04 40.72 16 14 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.31 -13.62 7.11 99.48 0.71 -12.91 16 17 C 0.17 6.33 4.81 86.38 0.42 6.75 16 18 C -0.14 -4.52 5.96 29.85 0.18 -4.34 16 19 C 0.49 14.85 8.33 71.24 0.59 15.44 16 20 O -0.55 -19.60 16.68 21.97 0.37 -19.24 16 21 O -0.51 -11.75 13.42 -51.39 -0.69 -12.44 16 22 C 0.08 2.52 6.74 22.33 0.15 2.67 16 23 F -0.13 -4.06 13.66 44.97 0.61 -3.45 16 24 C -0.10 -2.43 9.73 22.58 0.22 -2.21 16 25 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 26 H 0.14 5.03 5.92 -2.91 -0.02 5.02 16 27 H 0.05 1.70 7.54 -2.38 -0.02 1.68 16 28 H 0.12 5.43 4.82 -2.39 -0.01 5.42 16 29 H 0.26 11.72 8.23 -92.71 -0.76 10.96 16 30 H 0.04 1.56 7.95 -2.39 -0.02 1.54 16 31 H 0.06 2.10 7.70 -2.38 -0.02 2.08 16 32 H 0.12 3.61 4.65 -2.38 -0.01 3.60 16 33 H 0.10 3.35 8.05 -2.39 -0.02 3.33 16 34 H 0.42 5.53 9.10 -74.05 -0.67 4.86 16 35 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -55.11 311.60 6.19 -48.92 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.50 Total: 13.43 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 4.64 Total: 13.70 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -1.28 Total: -81.64 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.32 Total: -31.68 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.61 Total: -3.45 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.04 Total: 40.72 kcal Total: -55.11 6.19 -48.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.506 kcal (2) G-P(sol) polarization free energy of solvation -55.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds