Wall clock time and date at job start Tue Mar 31 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30701 * 1 3 3 C 1.30699 * 179.97438 * 2 1 4 4 C 1.50705 * 119.99625 * 235.93362 * 3 2 1 5 5 N 1.46499 * 109.46859 * 125.00644 * 4 3 2 6 6 C 1.34777 * 119.99776 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00076 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99722 * 180.27420 * 6 5 4 9 9 C 1.40138 * 119.99570 * 175.34926 * 8 6 5 10 10 C 1.38688 * 120.07782 * 34.59589 * 9 8 6 11 11 C 1.38202 * 120.02144 * 179.72544 * 10 9 8 12 12 C 1.38546 * 120.17207 * 0.54536 * 11 10 9 13 13 F 1.35099 * 119.92477 * 179.74738 * 12 11 10 14 14 C 1.38346 * 120.15183 * 359.72977 * 12 11 10 15 15 C 1.38736 * 119.97414 * 359.97438 * 14 12 11 16 16 O 1.35781 * 120.08098 * 180.02562 * 15 14 12 17 17 C 1.34802 * 117.00286 * 5.43152 * 16 15 14 18 18 H 1.07992 * 120.00206 * 354.95879 * 17 16 15 19 19 C 1.38640 * 119.99776 * 174.95278 * 17 16 15 20 20 N 1.31568 * 120.00141 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99740 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47390 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47087 * 120.00090 * 21 19 17 24 24 H 1.48497 * 109.47100 * 240.00206 * 21 19 17 25 25 H 1.08001 * 120.00465 * 34.06309 * 1 2 3 26 26 H 1.08002 * 119.99729 * 214.06736 * 1 2 3 27 27 H 1.07998 * 119.99995 * 55.93463 * 3 2 1 28 28 H 1.09003 * 109.46819 * 5.00055 * 4 3 2 29 29 H 1.09002 * 109.46942 * 245.00264 * 4 3 2 30 30 H 0.96997 * 120.00207 * 359.97438 * 5 4 3 31 31 H 0.96996 * 120.00371 * 355.34497 * 8 6 5 32 32 H 1.08000 * 119.99077 * 359.97261 * 10 9 8 33 33 H 1.07999 * 119.91710 * 180.25215 * 11 10 9 34 34 H 1.08000 * 120.00768 * 180.02562 * 14 12 11 35 35 H 0.96998 * 120.00219 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 6 2.6140 0.0006 0.0000 4 6 3.3671 0.7320 1.0812 5 7 4.2979 -0.1898 1.7371 6 6 5.0821 0.2466 2.7426 7 8 5.0175 1.4054 3.1050 8 7 5.9423 -0.6001 3.3422 9 6 6.8262 -0.1245 4.3203 10 6 6.4324 0.8917 5.1779 11 6 7.3030 1.3559 6.1458 12 6 8.5744 0.8163 6.2553 13 9 9.4231 1.2773 7.1998 14 6 8.9766 -0.1938 5.3997 15 6 8.1056 -0.6686 4.4299 16 8 8.4979 -1.6603 3.5895 17 6 9.7032 -2.2177 3.8211 18 1 10.3436 -1.8181 4.5935 19 6 10.1207 -3.3042 3.0679 20 7 9.3408 -3.7908 2.1267 21 14 11.7907 -4.0771 3.3893 22 1 12.4687 -3.3500 4.4923 23 1 11.6118 -5.5008 3.7722 24 1 12.6189 -3.9956 2.1595 25 1 -0.5401 0.7748 -0.5239 26 1 -0.5400 -0.7748 0.5240 27 1 3.1542 -0.5231 -0.7748 28 1 2.6619 1.1205 1.8160 29 1 3.9245 1.5585 0.6403 30 1 4.3492 -1.1143 1.4482 31 1 5.9496 -1.5385 3.0969 32 1 5.4437 1.3178 5.0921 33 1 6.9932 2.1445 6.8154 34 1 9.9681 -0.6130 5.4874 35 1 9.6330 -4.5507 1.5994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669400621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:07 Heat of formation + Delta-G solvation = -21.039614 kcal Electronic energy + Delta-G solvation = -22028.853996 eV Core-core repulsion = 18330.066379 eV Total energy + Delta-G solvation = -3698.787617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.22854 -40.22018 -38.79088 -36.57690 -35.70927 -34.01919 -33.37997 -32.40336 -29.77325 -29.28814 -27.92979 -25.50570 -24.39972 -22.37762 -21.60522 -20.53709 -18.68994 -18.31720 -17.89416 -17.38226 -16.79682 -15.61294 -15.40110 -15.21129 -15.11507 -14.95753 -14.50829 -14.29093 -14.22955 -14.08902 -13.63085 -13.47025 -13.23699 -13.02993 -12.62415 -12.26646 -12.12170 -11.64802 -11.35896 -10.96628 -10.72359 -10.52227 -9.94566 -9.75802 -9.62887 -9.52533 -9.33596 -8.96448 -8.91303 -7.85416 -7.08603 -6.60361 -4.18003 1.59438 1.76686 1.88428 2.14559 3.04160 3.05658 3.08415 3.13527 3.48173 3.85309 4.37258 4.52765 4.62800 4.87885 4.96436 5.04131 5.13860 5.26830 5.48747 5.61529 5.70019 5.76070 5.77373 6.03379 6.05841 6.22468 6.49058 6.62371 6.71470 6.92963 6.94512 6.97608 7.09311 7.16569 7.32224 7.68418 7.84257 8.27418 8.84293 8.87273 9.47920 10.56838 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004299 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.954850 B = 6512.173459 C = 8605.551052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.177 4.177 3 C -0.126 4.126 4 C 0.184 3.816 5 N -0.745 5.745 6 C 0.705 3.295 7 O -0.586 6.586 8 N -0.664 5.664 9 C 0.078 3.922 10 C -0.050 4.050 11 C -0.228 4.228 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.258 4.258 15 C 0.157 3.843 16 O -0.169 6.169 17 C -0.392 4.392 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.400 0.600 31 H 0.411 0.589 32 H 0.143 0.857 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 3.617 -2.034 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C -0.144 4.144 4 C 0.060 3.940 5 N -0.401 5.401 6 C 0.406 3.594 7 O -0.464 6.464 8 N -0.311 5.311 9 C -0.017 4.017 10 C -0.071 4.071 11 C -0.248 4.248 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.279 4.279 15 C 0.101 3.899 16 O -0.072 6.072 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.495 5.495 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.157 0.843 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.247 0.753 32 H 0.161 0.839 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.520 4.389 -2.095 12.505 hybrid contribution 1.115 -1.246 -0.078 1.674 sum -10.406 3.144 -2.173 11.085 Atomic orbital electron populations 1.22140 0.90775 1.02460 1.01951 1.23537 0.94671 0.99684 0.99948 1.21113 0.90351 1.02507 1.00389 1.19946 0.90612 0.91174 0.92285 1.45042 1.43086 1.14487 1.37489 1.15855 0.79278 0.84725 0.79586 1.90874 1.71596 1.16756 1.67222 1.42174 1.36888 1.11900 1.40108 1.16649 0.87541 1.02611 0.94914 1.20680 1.00007 0.94972 0.91439 1.20490 0.93662 1.06278 1.04392 1.17460 0.88060 0.95418 0.88291 1.91408 1.70645 1.88008 1.63000 1.20843 1.02965 1.03134 1.00962 1.18818 0.90079 0.90849 0.90139 1.83933 1.36011 1.42234 1.45001 1.21403 0.91407 1.13072 1.20883 0.88782 1.25275 0.99887 0.95647 0.95403 1.70015 1.36450 1.23498 1.19506 0.85619 0.79934 0.79030 0.78758 1.18955 1.20044 1.20066 0.85796 0.85659 0.84329 0.91179 0.90245 0.76583 0.75283 0.83944 0.85952 0.83966 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 14.70 29.10 0.43 -0.59 16 2 C -0.18 -1.69 13.46 -42.85 -0.58 -2.26 16 3 C -0.13 -1.22 9.62 -35.94 -0.35 -1.56 16 4 C 0.18 2.16 6.11 -5.19 -0.03 2.12 16 5 N -0.74 -9.99 5.55 -66.41 -0.37 -10.36 16 6 C 0.70 12.41 8.41 -86.92 -0.73 11.67 16 7 O -0.59 -11.88 13.76 5.29 0.07 -11.80 16 8 N -0.66 -12.34 5.20 -14.07 -0.07 -12.41 16 9 C 0.08 1.63 6.33 -83.44 -0.53 1.10 16 10 C -0.05 -0.98 8.70 -39.43 -0.34 -1.33 16 11 C -0.23 -4.29 10.02 -39.48 -0.40 -4.68 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.29 16 13 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 14 C -0.26 -5.67 9.14 -39.36 -0.36 -6.03 16 15 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 16 O -0.17 -4.40 9.32 0.03 0.00 -4.40 16 17 C -0.39 -10.31 9.49 30.88 0.29 -10.02 16 18 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -23.34 13.67 55.48 0.76 -22.58 16 21 Si 0.94 19.66 29.55 -169.99 -5.02 14.63 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 26 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 27 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 4.53 8.48 -40.82 -0.35 4.18 16 31 H 0.41 7.22 8.59 -40.82 -0.35 6.87 16 32 H 0.14 2.72 6.19 -52.49 -0.32 2.39 16 33 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 34 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -30.42 321.77 -6.23 -36.65 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -3.25 Total: 13.21 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.23 Total: -4.89 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.32 Total: -45.35 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.07 Total: -16.21 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.42 -6.23 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669400621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.611 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds