Wall clock time and date at job start Tue Mar 31 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30701 * 1 3 3 C 1.30699 * 179.97438 * 2 1 4 4 C 1.50705 * 119.99625 * 235.93362 * 3 2 1 5 5 N 1.46499 * 109.46859 * 125.00644 * 4 3 2 6 6 C 1.34777 * 119.99776 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00076 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99722 * 180.27420 * 6 5 4 9 9 C 1.40138 * 119.99570 * 175.34926 * 8 6 5 10 10 C 1.38688 * 120.07782 * 34.59589 * 9 8 6 11 11 C 1.38202 * 120.02144 * 179.72544 * 10 9 8 12 12 C 1.38546 * 120.17207 * 0.54536 * 11 10 9 13 13 F 1.35099 * 119.92477 * 179.74738 * 12 11 10 14 14 C 1.38346 * 120.15183 * 359.72977 * 12 11 10 15 15 C 1.38736 * 119.97414 * 359.97438 * 14 12 11 16 16 O 1.35781 * 120.08098 * 180.02562 * 15 14 12 17 17 C 1.34802 * 117.00286 * 5.43152 * 16 15 14 18 18 H 1.07992 * 120.00206 * 354.95879 * 17 16 15 19 19 C 1.38640 * 119.99776 * 174.95278 * 17 16 15 20 20 N 1.31568 * 120.00141 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99740 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47390 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47087 * 120.00090 * 21 19 17 24 24 H 1.48497 * 109.47100 * 240.00206 * 21 19 17 25 25 H 1.08001 * 120.00465 * 34.06309 * 1 2 3 26 26 H 1.08002 * 119.99729 * 214.06736 * 1 2 3 27 27 H 1.07998 * 119.99995 * 55.93463 * 3 2 1 28 28 H 1.09003 * 109.46819 * 5.00055 * 4 3 2 29 29 H 1.09002 * 109.46942 * 245.00264 * 4 3 2 30 30 H 0.96997 * 120.00207 * 359.97438 * 5 4 3 31 31 H 0.96996 * 120.00371 * 355.34497 * 8 6 5 32 32 H 1.08000 * 119.99077 * 359.97261 * 10 9 8 33 33 H 1.07999 * 119.91710 * 180.25215 * 11 10 9 34 34 H 1.08000 * 120.00768 * 180.02562 * 14 12 11 35 35 H 0.96998 * 120.00219 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 6 2.6140 0.0006 0.0000 4 6 3.3671 0.7320 1.0812 5 7 4.2979 -0.1898 1.7371 6 6 5.0821 0.2466 2.7426 7 8 5.0175 1.4054 3.1050 8 7 5.9423 -0.6001 3.3422 9 6 6.8262 -0.1245 4.3203 10 6 6.4324 0.8917 5.1779 11 6 7.3030 1.3559 6.1458 12 6 8.5744 0.8163 6.2553 13 9 9.4231 1.2773 7.1998 14 6 8.9766 -0.1938 5.3997 15 6 8.1056 -0.6686 4.4299 16 8 8.4979 -1.6603 3.5895 17 6 9.7032 -2.2177 3.8211 18 1 10.3436 -1.8181 4.5935 19 6 10.1207 -3.3042 3.0679 20 7 9.3408 -3.7908 2.1267 21 14 11.7907 -4.0771 3.3893 22 1 12.4687 -3.3500 4.4923 23 1 11.6118 -5.5008 3.7722 24 1 12.6189 -3.9956 2.1595 25 1 -0.5401 0.7748 -0.5239 26 1 -0.5400 -0.7748 0.5240 27 1 3.1542 -0.5231 -0.7748 28 1 2.6619 1.1205 1.8160 29 1 3.9245 1.5585 0.6403 30 1 4.3492 -1.1143 1.4482 31 1 5.9496 -1.5385 3.0969 32 1 5.4437 1.3178 5.0921 33 1 6.9932 2.1445 6.8154 34 1 9.9681 -0.6130 5.4874 35 1 9.6330 -4.5507 1.5994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669400621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:06 Heat of formation + Delta-G solvation = -40.446646 kcal Electronic energy + Delta-G solvation = -22029.695548 eV Core-core repulsion = 18330.066379 eV Total energy + Delta-G solvation = -3699.629169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81625 -41.73334 -40.41458 -38.18449 -36.81854 -35.55221 -34.32834 -34.28974 -31.14676 -30.64449 -29.32146 -27.38186 -25.40978 -23.97965 -23.18572 -21.95122 -20.16118 -19.89261 -19.43958 -18.44846 -18.28928 -17.13526 -16.94555 -16.63801 -16.50220 -16.44748 -15.95568 -15.57405 -15.42441 -15.28714 -15.19217 -14.95826 -14.82570 -14.07659 -13.95014 -13.79267 -13.47213 -13.38949 -13.01182 -12.58594 -12.34212 -12.12278 -11.64501 -11.39284 -11.04907 -10.82513 -10.35360 -10.28588 -9.90890 -9.53259 -8.74025 -8.50316 -6.16275 0.22064 0.47741 0.83919 1.10947 1.38167 1.43636 1.54070 1.76494 2.05047 2.15138 2.69294 3.06440 3.17294 3.25179 3.46703 3.90314 3.96044 4.17609 4.24205 4.37887 4.43679 4.61371 4.67981 4.95540 5.00468 5.03554 5.19857 5.23248 5.24655 5.31610 5.34758 5.43750 5.57672 5.90437 5.95073 6.08559 6.29139 6.93380 6.94558 7.44207 7.64129 8.70273 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004299 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.954850 B = 6512.173459 C = 8605.551052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.206 4.206 3 C -0.133 4.133 4 C 0.185 3.815 5 N -0.728 5.728 6 C 0.703 3.297 7 O -0.613 6.613 8 N -0.666 5.666 9 C 0.078 3.922 10 C -0.051 4.051 11 C -0.203 4.203 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.264 4.264 15 C 0.131 3.869 16 O -0.202 6.202 17 C -0.416 4.416 18 H 0.099 0.901 19 C -0.009 4.009 20 N -0.905 5.905 21 Si 1.011 2.989 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.270 1.270 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.411 0.589 31 H 0.414 0.586 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 4.203 -1.585 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.207 4.207 3 C -0.151 4.151 4 C 0.062 3.938 5 N -0.384 5.384 6 C 0.403 3.597 7 O -0.494 6.494 8 N -0.313 5.313 9 C -0.017 4.017 10 C -0.072 4.072 11 C -0.223 4.223 12 C 0.102 3.898 13 F -0.123 7.123 14 C -0.285 4.285 15 C 0.078 3.922 16 O -0.107 6.107 17 C -0.491 4.491 18 H 0.116 0.884 19 C -0.208 4.208 20 N -0.541 5.541 21 Si 0.832 3.168 22 H -0.181 1.181 23 H -0.192 1.192 24 H -0.195 1.195 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.165 0.835 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.250 0.750 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.615 4.987 -1.651 13.665 hybrid contribution 1.177 -1.244 -0.143 1.718 sum -11.438 3.744 -1.794 12.168 Atomic orbital electron populations 1.22642 0.90166 1.02497 0.99910 1.23885 0.95305 0.99686 1.01845 1.20920 0.90594 1.03364 1.00188 1.20007 0.90120 0.91031 0.92638 1.45022 1.42060 1.15380 1.35981 1.15982 0.79341 0.84219 0.80108 1.90839 1.72522 1.17750 1.68245 1.42195 1.36780 1.12235 1.40046 1.16906 0.87220 1.02326 0.95287 1.20871 1.00619 0.94492 0.91215 1.20879 0.92390 1.05533 1.03484 1.17452 0.88752 0.95276 0.88316 1.91427 1.70541 1.87798 1.62564 1.20920 1.02665 1.03647 1.01221 1.19155 0.91215 0.91064 0.90812 1.83911 1.36322 1.43805 1.46672 1.21787 0.92003 1.13825 1.21522 0.88369 1.26364 1.03672 0.95804 0.94979 1.70119 1.38584 1.24501 1.20932 0.84615 0.75151 0.78192 0.78877 1.18079 1.19208 1.19488 0.83703 0.83932 0.83513 0.91698 0.90923 0.75293 0.74970 0.82954 0.82437 0.84608 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 14.70 68.09 1.00 -0.40 16 2 C -0.21 -3.59 13.46 22.81 0.31 -3.28 16 3 C -0.13 -2.47 9.62 25.96 0.25 -2.22 16 4 C 0.19 4.28 6.11 85.63 0.52 4.81 16 5 N -0.73 -19.37 5.55 -482.29 -2.68 -22.05 16 6 C 0.70 24.66 8.41 179.06 1.51 26.16 16 7 O -0.61 -24.56 13.76 -4.00 -0.06 -24.62 16 8 N -0.67 -25.01 5.20 -316.71 -1.65 -26.65 16 9 C 0.08 3.29 6.33 38.21 0.24 3.53 16 10 C -0.05 -1.94 8.70 22.37 0.19 -1.74 16 11 C -0.20 -7.13 10.02 22.33 0.22 -6.91 16 12 C 0.12 4.75 7.29 22.37 0.16 4.91 16 13 F -0.14 -5.30 17.26 44.97 0.78 -4.53 16 14 C -0.26 -11.65 9.14 22.41 0.20 -11.44 16 15 C 0.13 6.21 6.66 22.68 0.15 6.36 16 16 O -0.20 -10.93 9.32 -22.80 -0.21 -11.14 16 17 C -0.42 -22.54 9.49 67.92 0.64 -21.90 16 18 H 0.10 5.03 5.20 -2.91 -0.02 5.01 16 19 C -0.01 -0.45 5.49 84.83 0.47 0.02 16 20 N -0.90 -50.50 13.67 21.61 0.30 -50.21 16 21 Si 1.01 40.64 29.55 68.60 2.03 42.66 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 25 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 26 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 27 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.06 1.57 7.94 -2.39 -0.02 1.55 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.41 9.20 8.48 -92.71 -0.79 8.41 16 31 H 0.41 14.96 8.59 -92.71 -0.80 14.17 16 32 H 0.15 5.54 6.19 -2.91 -0.02 5.52 16 33 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.14 6.08 5.64 -2.91 -0.02 6.07 16 35 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -66.20 321.77 3.97 -62.23 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -0.41 Total: 36.41 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.88 Total: -2.11 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -4.03 Total: -98.91 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.27 Total: -35.76 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -66.20 3.97 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669400621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.780 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds