Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35984 * 116.99457 * 2 1 4 4 C 1.39114 * 119.84922 * 0.27624 * 3 2 1 5 5 C 1.37665 * 120.44751 * 180.28268 * 4 3 2 6 6 C 1.39705 * 119.84536 * 359.44050 * 5 4 3 7 7 N 1.36029 * 133.29537 * 180.25490 * 6 5 4 8 8 C 1.30986 * 109.60998 * 180.02562 * 7 6 5 9 9 S 1.76201 * 125.07882 * 179.97438 * 8 7 6 10 10 C 1.80997 * 99.99832 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46647 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46849 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47003 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00067 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99572 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00232 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47239 * 90.00037 * 17 15 13 19 19 H 1.48504 * 109.47022 * 210.00276 * 17 15 13 20 20 H 1.48504 * 109.46952 * 329.99568 * 17 15 13 21 21 N 1.36703 * 109.84235 * 0.02562 * 8 7 6 22 22 H 0.97003 * 126.37920 * 180.02562 * 21 8 7 23 23 C 1.38529 * 107.24855 * 359.97438 * 21 8 7 24 24 C 1.38388 * 119.83791 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.47097 * 60.00382 * 1 2 3 26 26 H 1.09003 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47435 * 299.99892 * 1 2 3 28 28 H 1.08007 * 119.77989 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.08149 * 179.72142 * 5 4 3 30 30 H 1.09002 * 109.47117 * 299.99265 * 10 9 8 31 31 H 1.08996 * 109.47079 * 59.99951 * 10 9 8 32 32 H 1.08997 * 109.47332 * 299.99818 * 11 10 9 33 33 H 1.08996 * 109.47472 * 60.00130 * 11 10 9 34 34 H 1.08997 * 109.47222 * 300.00152 * 12 11 10 35 35 H 1.09000 * 109.47235 * 59.99878 * 12 11 10 36 36 H 0.97008 * 119.99711 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.09658 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2854 2.3763 0.0058 5 6 1.8974 3.6094 0.0000 6 6 3.2919 3.6935 0.0001 7 7 4.1635 4.7379 -0.0003 8 6 5.3925 4.2849 -0.0006 9 16 6.8413 5.2877 -0.0018 10 6 6.0854 6.9322 -0.0016 11 6 7.1831 7.9980 -0.0032 12 6 6.5441 9.3882 -0.0036 13 6 7.6252 10.4380 -0.0045 14 1 8.6642 10.1432 -0.0052 15 6 7.2880 11.7749 -0.0045 16 7 6.0228 12.1339 -0.0032 17 14 8.6281 13.0762 -0.0064 18 1 8.9817 13.4207 -1.4070 19 1 8.1394 14.2911 0.6939 20 1 9.8287 12.5514 0.6925 21 7 5.3831 2.9179 -0.0010 22 1 6.1601 2.3372 -0.0009 23 6 4.0574 2.5162 -0.0004 24 6 3.4284 1.2803 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2072 2.3127 0.0107 29 1 1.3009 4.5098 0.0001 30 1 5.4662 7.0476 -0.8912 31 1 5.4674 7.0478 0.8888 32 1 7.8027 7.8828 0.8862 33 1 7.8007 7.8822 -0.8937 34 1 5.9247 9.5031 -0.8931 35 1 5.9261 9.5043 0.8868 36 1 5.7856 13.0745 -0.0036 37 1 4.0157 0.3739 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042199389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = 15.428449 kcal Electronic energy + Delta-G solvation = -19296.842930 eV Core-core repulsion = 16165.849862 eV Total energy + Delta-G solvation = -3130.993067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03469 -39.69769 -36.12223 -34.53648 -33.22993 -32.04671 -30.43264 -29.18554 -27.58412 -27.21068 -23.99325 -23.22947 -22.22314 -21.61973 -20.32406 -18.79597 -18.10598 -17.02046 -16.39418 -16.08932 -15.95162 -15.66093 -15.38961 -14.58804 -14.53580 -14.11332 -14.01926 -13.61999 -13.12931 -12.63409 -12.52665 -12.51410 -11.84909 -11.83664 -11.41287 -11.18113 -11.14392 -10.91296 -10.68228 -10.60356 -10.34657 -10.09476 -9.83867 -9.38988 -9.12904 -8.88139 -8.37593 -8.35566 -7.33097 -6.01556 -4.04581 0.74515 1.15184 1.26854 2.29230 2.54103 2.70808 3.28283 3.31969 3.38247 3.41494 3.65031 4.28870 4.44986 4.60977 4.72379 4.82688 4.91999 4.95889 5.13311 5.20517 5.29873 5.34249 5.52277 5.59668 5.70617 5.93472 6.08329 6.12838 6.18484 6.47116 6.47764 6.64945 6.95573 7.01459 7.06989 7.63558 7.63705 7.74821 7.97007 8.37275 9.01751 9.59517 11.09604 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.002443 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.838002 B =11456.733364 C =12146.518902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.139 3.861 4 C -0.206 4.206 5 C -0.023 4.023 6 C 0.028 3.972 7 N -0.483 5.483 8 C 0.270 3.730 9 S -0.033 6.033 10 C -0.083 4.083 11 C -0.099 4.099 12 C 0.029 3.971 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.588 5.588 22 H 0.426 0.574 23 C 0.091 3.909 24 C -0.153 4.153 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -24.729 0.014 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.092 3.908 4 C -0.226 4.226 5 C -0.044 4.044 6 C -0.092 4.092 7 N -0.207 5.207 8 C -0.104 4.104 9 S 0.200 5.800 10 C -0.231 4.231 11 C -0.139 4.139 12 C -0.010 4.010 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.203 5.203 22 H 0.265 0.735 23 C -0.022 4.022 24 C -0.175 4.175 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.787 -24.194 0.019 25.417 hybrid contribution -0.295 0.067 -0.012 0.302 sum -8.082 -24.128 0.007 25.445 Atomic orbital electron populations 1.23070 0.78176 1.03912 1.01579 1.86049 1.21471 1.26595 1.88966 1.18362 0.91095 0.84181 0.97153 1.20999 1.00103 0.91450 1.10091 1.20110 0.90728 0.97633 0.95902 1.19052 0.94076 0.88343 1.07707 1.71082 0.97156 1.29296 1.23142 1.25623 0.99182 0.83827 1.01813 1.85694 1.00594 1.01907 1.91821 1.23894 1.02588 0.89533 1.07112 1.21575 0.95673 0.95006 1.01627 1.19085 0.96166 0.87907 0.97809 1.21200 0.92979 0.90909 1.50974 0.92529 1.25027 0.95407 0.98768 0.95258 1.69969 1.16037 1.16714 1.50539 0.86569 0.82010 0.81164 0.78110 1.20644 1.21218 1.19849 1.42910 1.06627 1.06362 1.64384 0.73471 1.18414 0.84071 0.95510 1.04192 1.18729 0.91546 0.94897 1.12337 0.92487 0.88269 0.92479 0.84674 0.84601 0.88751 0.88745 0.92188 0.92194 0.96133 0.96122 0.92923 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.00 10.49 -19.69 -0.21 -3.21 16 3 C 0.14 1.49 6.68 -39.20 -0.26 1.23 16 4 C -0.21 -2.07 9.01 -39.47 -0.36 -2.42 16 5 C -0.02 -0.29 10.09 -39.24 -0.40 -0.68 16 6 C 0.03 0.42 7.22 -84.63 -0.61 -0.19 16 7 N -0.48 -8.12 10.57 -10.88 -0.11 -8.24 16 8 C 0.27 4.05 8.21 -88.43 -0.73 3.33 16 9 S -0.03 -0.48 22.31 -107.50 -2.40 -2.88 16 10 C -0.08 -1.44 5.15 37.16 0.19 -1.25 16 11 C -0.10 -1.97 5.16 -26.73 -0.14 -2.11 16 12 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 13 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 N -0.59 -7.20 6.28 -10.57 -0.07 -7.27 16 22 H 0.43 3.75 8.96 -40.82 -0.37 3.39 16 23 C 0.09 1.19 7.29 -83.85 -0.61 0.58 16 24 C -0.15 -1.72 10.00 -39.37 -0.39 -2.12 16 25 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.26 7.64 -51.93 -0.40 -0.13 16 28 H 0.14 0.96 6.26 -52.48 -0.33 0.63 16 29 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -32.37 331.63 -9.77 -42.14 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.83 Total: -0.80 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.86 Total: -15.25 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.55 Total: -41.50 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.21 Total: -3.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.40 Total: -2.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.37 -9.77 -42.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042199389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.569 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds