Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35984 * 116.99457 * 2 1 4 4 C 1.39114 * 119.84922 * 0.27624 * 3 2 1 5 5 C 1.37665 * 120.44751 * 180.28268 * 4 3 2 6 6 C 1.39705 * 119.84536 * 359.44050 * 5 4 3 7 7 N 1.36029 * 133.29537 * 180.25490 * 6 5 4 8 8 C 1.30986 * 109.60998 * 180.02562 * 7 6 5 9 9 S 1.76201 * 125.07882 * 179.97438 * 8 7 6 10 10 C 1.80997 * 99.99832 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46647 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46849 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47003 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00067 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99572 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00232 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47239 * 90.00037 * 17 15 13 19 19 H 1.48504 * 109.47022 * 210.00276 * 17 15 13 20 20 H 1.48504 * 109.46952 * 329.99568 * 17 15 13 21 21 N 1.36703 * 109.84235 * 0.02562 * 8 7 6 22 22 H 0.97003 * 126.37920 * 180.02562 * 21 8 7 23 23 C 1.38529 * 107.24855 * 359.97438 * 21 8 7 24 24 C 1.38388 * 119.83791 * 179.97438 * 3 2 1 25 25 H 1.09004 * 109.47097 * 60.00382 * 1 2 3 26 26 H 1.09003 * 109.47229 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47435 * 299.99892 * 1 2 3 28 28 H 1.08007 * 119.77989 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.08149 * 179.72142 * 5 4 3 30 30 H 1.09002 * 109.47117 * 299.99265 * 10 9 8 31 31 H 1.08996 * 109.47079 * 59.99951 * 10 9 8 32 32 H 1.08997 * 109.47332 * 299.99818 * 11 10 9 33 33 H 1.08996 * 109.47472 * 60.00130 * 11 10 9 34 34 H 1.08997 * 109.47222 * 300.00152 * 12 11 10 35 35 H 1.09000 * 109.47235 * 59.99878 * 12 11 10 36 36 H 0.97008 * 119.99711 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.09658 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2117 0.0000 4 6 1.2854 2.3763 0.0058 5 6 1.8974 3.6094 0.0000 6 6 3.2919 3.6935 0.0001 7 7 4.1635 4.7379 -0.0003 8 6 5.3925 4.2849 -0.0006 9 16 6.8413 5.2877 -0.0018 10 6 6.0854 6.9322 -0.0016 11 6 7.1831 7.9980 -0.0032 12 6 6.5441 9.3882 -0.0036 13 6 7.6252 10.4380 -0.0045 14 1 8.6642 10.1432 -0.0052 15 6 7.2880 11.7749 -0.0045 16 7 6.0228 12.1339 -0.0032 17 14 8.6281 13.0762 -0.0064 18 1 8.9817 13.4207 -1.4070 19 1 8.1394 14.2911 0.6939 20 1 9.8287 12.5514 0.6925 21 7 5.3831 2.9179 -0.0010 22 1 6.1601 2.3372 -0.0009 23 6 4.0574 2.5162 -0.0004 24 6 3.4284 1.2803 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2072 2.3127 0.0107 29 1 1.3009 4.5098 0.0001 30 1 5.4662 7.0476 -0.8912 31 1 5.4674 7.0478 0.8888 32 1 7.8027 7.8828 0.8862 33 1 7.8007 7.8822 -0.8937 34 1 5.9247 9.5031 -0.8931 35 1 5.9261 9.5043 0.8868 36 1 5.7856 13.0745 -0.0036 37 1 4.0157 0.3739 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042199389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -3.969263 kcal Electronic energy + Delta-G solvation = -19297.684078 eV Core-core repulsion = 16165.849862 eV Total energy + Delta-G solvation = -3131.834215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.02402 -40.45038 -36.96403 -36.39593 -34.33044 -33.97789 -31.30854 -30.11876 -29.38440 -27.87549 -25.52874 -24.58635 -23.20106 -22.60981 -22.05297 -19.69079 -19.07907 -18.44127 -17.92457 -16.85622 -16.83827 -16.69702 -16.49442 -16.42343 -16.00809 -15.25396 -14.98676 -14.56891 -14.46669 -13.95451 -13.70727 -13.67684 -13.22913 -13.14007 -12.88725 -12.74791 -12.39895 -12.13010 -12.05531 -11.86134 -11.74203 -11.55195 -11.33266 -11.17179 -11.11303 -10.54669 -9.85714 -9.30032 -8.39575 -8.18831 -6.30161 -0.20259 -0.01204 0.36857 0.98902 1.42455 1.43758 1.50222 1.54886 1.84745 2.42752 2.53259 2.71209 3.14736 3.36606 3.81663 3.95970 4.01122 4.02641 4.11214 4.31273 4.40566 4.45368 4.46972 4.54834 4.77355 4.80153 4.89694 4.99931 5.03917 5.14791 5.21651 5.30315 5.50813 5.55115 5.68725 5.84137 6.13995 6.22490 6.34536 6.61076 6.86343 7.39033 8.93087 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.002443 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.838002 B =11456.733364 C =12146.518902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.144 3.856 4 C -0.192 4.192 5 C -0.038 4.038 6 C -0.011 4.011 7 N -0.518 5.518 8 C 0.250 3.750 9 S 0.014 5.986 10 C -0.083 4.083 11 C -0.084 4.084 12 C 0.031 3.969 13 C -0.542 4.542 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.261 1.261 21 N -0.574 5.574 22 H 0.440 0.560 23 C 0.087 3.913 24 C -0.160 4.160 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.067 0.933 28 H 0.167 0.833 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.068 0.932 34 H -0.005 1.005 35 H -0.005 1.005 36 H 0.263 0.737 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -26.676 0.011 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.096 3.904 4 C -0.213 4.213 5 C -0.058 4.058 6 C -0.130 4.130 7 N -0.244 5.244 8 C -0.125 4.125 9 S 0.247 5.753 10 C -0.232 4.232 11 C -0.123 4.123 12 C -0.008 4.008 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 N -0.191 5.191 22 H 0.283 0.717 23 C -0.026 4.026 24 C -0.182 4.182 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.185 0.815 29 H 0.159 0.841 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.508 -26.180 0.015 27.236 hybrid contribution -0.571 0.481 -0.012 0.747 sum -8.079 -25.699 0.004 26.939 Atomic orbital electron populations 1.23425 0.75975 1.05854 1.02626 1.86057 1.23733 1.25756 1.88485 1.18524 0.91159 0.84941 0.95749 1.21309 1.01665 0.90322 1.07986 1.20347 0.90030 0.98923 0.96477 1.19483 0.95253 0.88617 1.09672 1.70981 0.98297 1.31030 1.24045 1.25567 0.98900 0.84980 1.03038 1.85289 0.99184 0.98766 1.92105 1.23533 1.01666 0.91865 1.06151 1.21263 0.95962 0.92793 1.02310 1.18962 0.95397 0.91167 0.95313 1.21673 0.93873 0.91882 1.50574 0.91674 1.26011 0.97854 1.01406 0.94765 1.70111 1.18336 1.17318 1.51604 0.85418 0.79066 0.77911 0.78477 1.19787 1.20924 1.18541 1.42769 1.07141 1.05539 1.63615 0.71691 1.18589 0.84042 0.95689 1.04265 1.18964 0.92237 0.94800 1.12195 0.91404 0.86087 0.91389 0.81517 0.84071 0.89820 0.89814 0.91392 0.91381 0.98674 0.98666 0.92778 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.28 10.49 -93.37 -0.98 -6.26 16 3 C 0.14 2.78 6.68 22.52 0.15 2.93 16 4 C -0.19 -3.49 9.01 22.34 0.20 -3.28 16 5 C -0.04 -0.90 10.09 22.49 0.23 -0.68 16 6 C -0.01 -0.34 7.22 39.38 0.28 -0.05 16 7 N -0.52 -17.90 10.57 -188.33 -1.99 -19.89 16 8 C 0.25 7.51 8.21 179.58 1.47 8.98 16 9 S 0.01 0.41 22.31 -56.49 -1.26 -0.85 16 10 C -0.08 -2.97 5.15 71.98 0.37 -2.60 16 11 C -0.08 -3.38 5.16 30.60 0.16 -3.22 16 12 C 0.03 1.62 4.97 29.85 0.15 1.77 16 13 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 14 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 15 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 16 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 17 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 N -0.57 -13.66 6.28 -187.36 -1.18 -14.83 16 22 H 0.44 7.19 8.96 -92.71 -0.83 6.36 16 23 C 0.09 2.22 7.29 38.72 0.28 2.50 16 24 C -0.16 -3.34 10.00 22.41 0.22 -3.12 16 25 H 0.07 0.40 7.66 -2.38 -0.02 0.38 16 26 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 0.40 7.64 -2.39 -0.02 0.38 16 28 H 0.17 1.84 6.26 -2.91 -0.02 1.83 16 29 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.08 3.14 8.14 -2.40 -0.02 3.13 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 37 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -71.17 331.63 2.49 -68.68 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.26 Total: 9.51 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 5.33 Total: -25.67 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -2.88 Total: -91.66 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.98 Total: -6.26 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.26 Total: -0.85 kcal Total: -71.17 2.49 -68.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042199389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.707 kcal (2) G-P(sol) polarization free energy of solvation -71.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds