Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99779 * 2 1 4 4 H 1.48503 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47121 * 300.00075 * 3 2 1 6 6 H 1.48500 * 109.47310 * 60.00310 * 3 2 1 7 7 C 1.37878 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46914 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.46655 * 180.02562 * 11 10 9 13 13 C 1.34755 * 116.99512 * 180.02562 * 12 11 10 14 14 O 1.21505 * 120.00034 * 359.97438 * 13 12 11 15 15 C 1.47406 * 119.99874 * 179.97438 * 13 12 11 16 16 C 1.39829 * 120.14609 * 359.97438 * 15 13 12 17 17 C 1.37723 * 119.94719 * 179.97438 * 16 15 13 18 18 C 1.38511 * 120.33609 * 0.07732 * 17 16 15 19 19 C 1.38582 * 120.42126 * 0.27942 * 18 17 16 20 20 C 1.38996 * 119.91298 * 359.32155 * 19 18 17 21 21 O 1.35802 * 120.87369 * 180.56901 * 20 19 18 22 22 C 1.43172 * 116.74257 * 342.99566 * 21 20 19 23 23 C 1.53470 * 108.25202 * 46.15890 * 22 21 20 24 24 O 1.36149 * 119.36407 * 179.97438 * 19 18 17 25 25 H 0.96995 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47217 * 60.00065 * 9 7 2 27 27 H 1.08995 * 109.47441 * 299.99752 * 9 7 2 28 28 H 1.09000 * 109.46920 * 60.00228 * 10 9 7 29 29 H 1.08995 * 109.47222 * 300.00231 * 10 9 7 30 30 H 1.09000 * 109.47071 * 60.00405 * 11 10 9 31 31 H 1.09006 * 109.47013 * 300.00359 * 11 10 9 32 32 H 1.07997 * 120.02592 * 359.97000 * 16 15 13 33 33 H 1.07996 * 119.83632 * 180.02562 * 17 16 15 34 34 H 1.08002 * 119.78500 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.70990 * 165.85235 * 22 21 20 36 36 H 1.09003 * 109.70658 * 286.47258 * 22 21 20 37 37 H 1.08997 * 109.70835 * 60.02229 * 23 22 21 38 38 H 1.09006 * 109.70866 * 180.60047 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0018 13 6 1.9090 -7.3359 -0.0019 14 8 0.7044 -7.4951 -0.0010 15 6 2.8069 -8.5049 -0.0031 16 6 4.1936 -8.3252 -0.0046 17 6 5.0288 -9.4203 -0.0052 18 6 4.5024 -10.7016 -0.0058 19 6 3.1304 -10.8965 -0.0117 20 6 2.2746 -9.8013 -0.0028 21 8 0.9271 -9.9699 0.0033 22 6 0.4377 -11.2615 -0.3737 23 6 1.2645 -12.3230 0.3645 24 8 2.6364 -12.1652 -0.0127 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8727 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 0.8528 -5.0447 -0.8905 31 1 0.8546 -5.0450 0.8895 32 1 4.6094 -7.3285 -0.0055 33 1 6.0995 -9.2795 -0.0060 34 1 5.1656 -11.5540 -0.0067 35 1 -0.6118 -11.3529 -0.0941 36 1 0.5449 -11.3953 -1.4502 37 1 1.1615 -12.1860 1.4410 38 1 0.9178 -13.3182 0.0859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064168535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -141.628403 kcal Electronic energy + Delta-G solvation = -22423.592623 eV Core-core repulsion = 18810.743437 eV Total energy + Delta-G solvation = -3612.849186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.65643 -39.94597 -37.87321 -37.58250 -36.17317 -33.94994 -31.86599 -31.53481 -31.18209 -28.77418 -27.15634 -25.22525 -24.55971 -23.02450 -21.30086 -20.93387 -20.30451 -19.05840 -17.91090 -17.46367 -16.90857 -16.39579 -16.21689 -15.80068 -15.64454 -15.27204 -14.97734 -14.54365 -14.46102 -14.23268 -13.99317 -13.47471 -13.16361 -12.46574 -12.27162 -12.14599 -12.04559 -11.79103 -11.49789 -11.42801 -11.03236 -10.96318 -10.61394 -10.58658 -10.31915 -10.20368 -9.68289 -9.48328 -9.12782 -9.02436 -8.41748 -8.37343 -6.01908 -4.04757 0.47056 0.99111 2.54104 2.70176 2.83338 2.91588 3.31274 3.38627 3.43009 3.52543 3.84349 4.28843 4.43986 4.45210 4.52340 4.67179 4.77976 4.87347 4.99559 5.10382 5.20394 5.34138 5.36004 5.63626 5.68138 5.71485 5.77824 6.04504 6.08493 6.25482 6.49675 6.58023 6.58107 6.88879 7.01414 7.04344 7.63039 7.74138 7.96724 8.03880 8.38084 9.01875 9.59467 11.09632 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.002666 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.518769 B =10500.450822 C =11238.417728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.070 3.930 12 O -0.355 6.355 13 C 0.502 3.498 14 O -0.490 6.490 15 C -0.121 4.121 16 C -0.056 4.056 17 C -0.132 4.132 18 C -0.081 4.081 19 C 0.031 3.969 20 C 0.112 3.888 21 O -0.273 6.273 22 C 0.015 3.985 23 C 0.019 3.981 24 O -0.306 6.306 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -27.043 -0.011 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.272 6.272 13 C 0.346 3.654 14 O -0.378 6.378 15 C -0.123 4.123 16 C -0.074 4.074 17 C -0.150 4.150 18 C -0.100 4.100 19 C -0.013 4.013 20 C 0.065 3.935 21 O -0.185 6.185 22 C -0.061 4.061 23 C -0.056 4.056 24 O -0.220 6.220 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.212 -26.962 -0.010 27.668 hybrid contribution -0.029 0.790 0.003 0.790 sum 6.182 -26.173 -0.007 26.893 Atomic orbital electron populations 1.69978 1.06089 1.26627 1.50702 1.25039 0.94876 0.99375 0.95247 0.86493 0.80096 0.83582 0.77583 1.19660 1.20994 1.20987 1.21216 0.93161 0.90669 1.50767 0.92359 1.19061 0.93868 0.90756 0.97703 1.21764 0.99928 0.90942 1.01965 1.23503 0.91199 0.83369 1.02190 1.86527 1.42334 1.14676 1.83668 1.20707 0.87035 0.83600 0.74103 1.90866 1.15717 1.86716 1.44539 1.18580 0.93420 0.88544 1.11720 1.21413 0.90598 1.00747 0.94627 1.20918 1.00601 0.90876 1.02572 1.20675 0.91411 0.98509 0.99413 1.18694 0.93056 0.83051 1.06527 1.18884 0.83555 0.92179 0.98914 1.86603 1.16847 1.32470 1.82585 1.23758 1.00225 0.81836 1.00279 1.23679 0.80239 1.01400 1.00305 1.86317 1.27561 1.23350 1.84819 0.92963 0.96223 0.96214 0.92119 0.92113 0.91506 0.91500 0.83116 0.84052 0.84249 0.85655 0.90194 0.90274 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.28 5.53 -26.72 -0.15 -2.43 16 11 C 0.07 1.35 5.48 37.16 0.20 1.55 16 12 O -0.35 -6.27 9.47 -40.64 -0.38 -6.66 16 13 C 0.50 8.73 7.89 34.46 0.27 9.00 16 14 O -0.49 -9.78 14.89 -26.68 -0.40 -10.18 16 15 C -0.12 -1.71 5.88 -104.86 -0.62 -2.33 16 16 C -0.06 -0.62 9.61 -39.18 -0.38 -0.99 16 17 C -0.13 -1.13 10.02 -39.67 -0.40 -1.53 16 18 C -0.08 -0.73 9.95 -39.35 -0.39 -1.12 16 19 C 0.03 0.35 6.49 -39.17 -0.25 0.09 16 20 C 0.11 1.50 6.51 -38.59 -0.25 1.25 16 21 O -0.27 -3.75 8.42 -47.36 -0.40 -4.15 16 22 C 0.01 0.12 7.26 37.40 0.27 0.39 16 23 C 0.02 0.13 7.26 37.40 0.27 0.40 16 24 O -0.31 -3.00 10.42 -33.04 -0.34 -3.35 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.15 1.53 7.61 -52.49 -0.40 1.13 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -34.33 329.95 -7.82 -42.14 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -5.01 Total: -4.34 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.97 Total: -8.79 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.52 Total: -24.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.33 -7.82 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064168535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.485 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds