Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99779 * 2 1 4 4 H 1.48503 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47121 * 300.00075 * 3 2 1 6 6 H 1.48500 * 109.47310 * 60.00310 * 3 2 1 7 7 C 1.37878 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46914 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.46655 * 180.02562 * 11 10 9 13 13 C 1.34755 * 116.99512 * 180.02562 * 12 11 10 14 14 O 1.21505 * 120.00034 * 359.97438 * 13 12 11 15 15 C 1.47406 * 119.99874 * 179.97438 * 13 12 11 16 16 C 1.39829 * 120.14609 * 359.97438 * 15 13 12 17 17 C 1.37723 * 119.94719 * 179.97438 * 16 15 13 18 18 C 1.38511 * 120.33609 * 0.07732 * 17 16 15 19 19 C 1.38582 * 120.42126 * 0.27942 * 18 17 16 20 20 C 1.38996 * 119.91298 * 359.32155 * 19 18 17 21 21 O 1.35802 * 120.87369 * 180.56901 * 20 19 18 22 22 C 1.43172 * 116.74257 * 342.99566 * 21 20 19 23 23 C 1.53470 * 108.25202 * 46.15890 * 22 21 20 24 24 O 1.36149 * 119.36407 * 179.97438 * 19 18 17 25 25 H 0.96995 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47217 * 60.00065 * 9 7 2 27 27 H 1.08995 * 109.47441 * 299.99752 * 9 7 2 28 28 H 1.09000 * 109.46920 * 60.00228 * 10 9 7 29 29 H 1.08995 * 109.47222 * 300.00231 * 10 9 7 30 30 H 1.09000 * 109.47071 * 60.00405 * 11 10 9 31 31 H 1.09006 * 109.47013 * 300.00359 * 11 10 9 32 32 H 1.07997 * 120.02592 * 359.97000 * 16 15 13 33 33 H 1.07996 * 119.83632 * 180.02562 * 17 16 15 34 34 H 1.08002 * 119.78500 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.70990 * 165.85235 * 22 21 20 36 36 H 1.09003 * 109.70658 * 286.47258 * 22 21 20 37 37 H 1.08997 * 109.70835 * 60.02229 * 23 22 21 38 38 H 1.09006 * 109.70866 * 180.60047 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0018 13 6 1.9090 -7.3359 -0.0019 14 8 0.7044 -7.4951 -0.0010 15 6 2.8069 -8.5049 -0.0031 16 6 4.1936 -8.3252 -0.0046 17 6 5.0288 -9.4203 -0.0052 18 6 4.5024 -10.7016 -0.0058 19 6 3.1304 -10.8965 -0.0117 20 6 2.2746 -9.8013 -0.0028 21 8 0.9271 -9.9699 0.0033 22 6 0.4377 -11.2615 -0.3737 23 6 1.2645 -12.3230 0.3645 24 8 2.6364 -12.1652 -0.0127 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8727 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 0.8528 -5.0447 -0.8905 31 1 0.8546 -5.0450 0.8895 32 1 4.6094 -7.3285 -0.0055 33 1 6.0995 -9.2795 -0.0060 34 1 5.1656 -11.5540 -0.0067 35 1 -0.6118 -11.3529 -0.0941 36 1 0.5449 -11.3953 -1.4502 37 1 1.1615 -12.1860 1.4410 38 1 0.9178 -13.3182 0.0859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064168535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = -161.923256 kcal Electronic energy + Delta-G solvation = -22424.472673 eV Core-core repulsion = 18810.743437 eV Total energy + Delta-G solvation = -3613.729237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.47868 -41.26063 -38.70577 -38.43494 -37.60270 -35.92865 -33.72788 -32.27568 -32.19191 -29.52673 -29.04004 -26.27238 -25.56574 -24.69652 -22.19586 -22.11427 -21.99615 -19.94877 -18.86176 -18.60666 -18.28287 -17.94379 -17.66842 -16.98738 -16.48507 -16.44953 -16.10962 -15.68322 -15.59454 -15.30838 -14.99592 -14.78235 -14.21475 -14.06679 -13.82261 -13.73346 -13.17938 -12.95017 -12.84549 -12.49869 -12.37903 -12.25072 -12.10677 -12.07323 -11.93820 -11.63443 -11.42285 -11.33655 -11.18051 -10.58034 -9.87604 -9.21812 -8.21685 -6.33334 -0.46824 0.19957 1.41674 1.42379 1.44059 1.51519 1.56970 1.96183 2.18892 2.41764 2.62255 3.12280 3.15204 3.50953 3.68650 3.85201 3.89285 3.98541 4.05515 4.13539 4.18121 4.30667 4.37741 4.45850 4.54202 4.62855 4.79216 4.82338 4.97117 5.04914 5.07729 5.28320 5.37815 5.50184 5.55378 5.63343 5.80121 5.80605 6.18897 6.26049 6.67044 6.82960 7.36281 8.90963 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.002666 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.518769 B =10500.450822 C =11238.417728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.079 3.921 12 O -0.350 6.350 13 C 0.500 3.500 14 O -0.527 6.527 15 C -0.154 4.154 16 C -0.057 4.057 17 C -0.117 4.117 18 C -0.069 4.069 19 C 0.024 3.976 20 C 0.094 3.906 21 O -0.310 6.310 22 C 0.005 3.995 23 C 0.020 3.980 24 O -0.311 6.311 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.577 -28.452 0.001 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.129 4.129 11 C 0.006 3.994 12 O -0.267 6.267 13 C 0.346 3.654 14 O -0.417 6.417 15 C -0.156 4.156 16 C -0.075 4.075 17 C -0.135 4.135 18 C -0.087 4.087 19 C -0.021 4.021 20 C 0.047 3.953 21 O -0.223 6.223 22 C -0.070 4.070 23 C -0.055 4.055 24 O -0.226 6.226 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.175 0.825 33 H 0.199 0.801 34 H 0.190 0.810 35 H 0.163 0.837 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.992 -28.398 0.001 29.788 hybrid contribution -0.906 1.077 -0.004 1.407 sum 8.086 -27.322 -0.002 28.493 Atomic orbital electron populations 1.70116 1.07953 1.27878 1.51596 1.26042 0.95797 1.03627 0.94606 0.85313 0.79160 0.78331 0.77724 1.18209 1.20420 1.20410 1.21652 0.93810 0.91740 1.50671 0.91484 1.18945 0.94289 0.92565 0.95401 1.21457 0.98709 0.89949 1.02783 1.23156 0.91025 0.83575 1.01647 1.86507 1.41503 1.14753 1.83891 1.21411 0.87314 0.83873 0.72824 1.90834 1.17355 1.86967 1.46571 1.18607 0.94243 0.87461 1.15287 1.21603 0.89476 1.02163 0.94288 1.21339 1.02119 0.89731 1.00273 1.21168 0.90878 0.99820 0.96831 1.18930 0.93701 0.82925 1.06545 1.19110 0.83898 0.92634 0.99691 1.86535 1.17482 1.35342 1.82943 1.24090 1.01544 0.80567 1.00783 1.23929 0.78711 1.02619 1.00203 1.86304 1.28949 1.22477 1.84847 0.92692 0.98583 0.98579 0.91203 0.91189 0.92140 0.92155 0.82518 0.80126 0.81038 0.83726 0.89922 0.90159 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.90 5.53 30.60 0.17 -3.73 16 11 C 0.08 3.16 5.48 71.98 0.39 3.56 16 12 O -0.35 -12.61 9.47 -56.66 -0.54 -13.15 16 13 C 0.50 18.08 7.89 70.24 0.55 18.63 16 14 O -0.53 -22.23 14.89 26.90 0.40 -21.83 16 15 C -0.15 -4.42 5.88 -20.02 -0.12 -4.54 16 16 C -0.06 -1.18 9.61 22.53 0.22 -0.97 16 17 C -0.12 -1.61 10.02 22.21 0.22 -1.38 16 18 C -0.07 -1.01 9.95 22.42 0.22 -0.78 16 19 C 0.02 0.49 6.49 22.53 0.15 0.64 16 20 C 0.09 2.52 6.51 22.91 0.15 2.67 16 21 O -0.31 -8.82 8.42 -64.33 -0.54 -9.36 16 22 C 0.00 0.08 7.26 72.14 0.52 0.60 16 23 C 0.02 0.24 7.26 72.14 0.52 0.77 16 24 O -0.31 -5.46 10.42 -82.99 -0.86 -6.32 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.16 2.95 7.61 -2.91 -0.02 2.93 16 33 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.16 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -76.71 329.95 5.68 -71.02 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.06 Total: 4.06 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 3.85 Total: -13.44 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.28 Total: -57.35 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -1.54 Total: -50.66 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.71 5.68 -71.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064168535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.900 kcal (2) G-P(sol) polarization free energy of solvation -76.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds