Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 117.00062 * 2 1 4 4 O 1.20830 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00271 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47364 * 179.97438 * 5 3 2 7 7 C 1.36937 * 119.99756 * 269.72391 * 6 5 3 8 8 H 1.07989 * 120.00173 * 31.02154 * 7 6 5 9 9 C 1.38814 * 119.99640 * 211.02196 * 7 6 5 10 10 N 1.31620 * 120.00047 * 312.91569 * 9 7 6 11 11 Si 1.86793 * 120.00011 * 132.92099 * 9 7 6 12 12 H 1.48505 * 109.47402 * 89.99641 * 11 9 7 13 13 H 1.48506 * 109.47085 * 209.99581 * 11 9 7 14 14 H 1.48503 * 109.47262 * 329.99554 * 11 9 7 15 15 C 1.46503 * 120.00122 * 89.99961 * 6 5 3 16 16 C 1.50710 * 109.46917 * 262.98823 * 15 6 5 17 17 C 1.38343 * 119.85654 * 261.14922 * 16 15 6 18 18 C 1.37931 * 120.17950 * 179.76482 * 17 16 15 19 19 C 1.39661 * 119.89699 * 0.50671 * 18 17 16 20 20 C 1.43195 * 120.13736 * 179.72283 * 19 18 17 21 21 N 8.04880 * 68.98694 * 22.30311 * 2 1 3 22 22 C 1.39582 * 119.72137 * 359.74967 * 19 18 17 23 23 C 1.38200 * 119.82219 * 359.97438 * 22 19 18 24 24 F 1.35096 * 119.95190 * 179.97438 * 23 22 19 25 25 H 1.08994 * 109.47460 * 300.00179 * 1 2 3 26 26 H 1.09006 * 109.46696 * 60.00361 * 1 2 3 27 27 H 1.09004 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47087 * 59.99569 * 5 3 2 29 29 H 1.09001 * 109.46966 * 299.99713 * 5 3 2 30 30 H 0.96995 * 120.00385 * 178.06040 * 10 9 7 31 31 H 1.09002 * 109.46986 * 22.98394 * 15 6 5 32 32 H 1.08995 * 109.47300 * 142.99009 * 15 6 5 33 33 H 1.08004 * 119.91028 * 0.02562 * 17 16 15 34 34 H 1.08000 * 120.05679 * 180.25632 * 18 17 16 35 35 H 1.07999 * 120.09143 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1809 3.3344 -1.1872 8 1 3.6021 3.0629 -2.0576 9 6 5.1267 4.3469 -1.2708 10 7 5.1688 5.2859 -0.3494 11 14 6.3397 4.3771 -2.6910 12 1 5.7661 5.1593 -3.8155 13 1 7.6081 5.0079 -2.2454 14 1 6.6093 2.9879 -3.1413 15 6 4.1899 3.3825 1.2674 16 6 2.9514 4.1674 1.6160 17 6 2.8944 5.5220 1.3409 18 6 1.7624 6.2458 1.6527 19 6 0.6750 5.6113 2.2573 20 6 -0.5005 6.3590 2.5885 21 7 -1.4341 6.9514 2.8514 22 6 0.7391 4.2455 2.5377 23 6 1.8768 3.5303 2.2152 24 9 1.9418 2.2083 2.4860 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7809 -0.8907 29 1 3.9564 0.7806 0.8892 30 1 5.8475 5.9775 -0.3923 31 1 4.3942 2.6575 2.0552 32 1 5.0360 4.0628 1.1713 33 1 3.7369 6.0133 0.8770 34 1 1.7184 7.3024 1.4333 35 1 -0.0985 3.7487 3.0047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = -34.004479 kcal Electronic energy + Delta-G solvation = -23931.649607 eV Core-core repulsion = 20232.299791 eV Total energy + Delta-G solvation = -3699.349816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.25762 -39.57635 -38.64042 -36.52246 -35.82829 -35.09562 -31.94175 -31.30161 -29.94260 -28.28699 -26.50368 -26.09671 -23.12955 -22.13165 -21.25579 -19.98947 -18.64010 -17.24603 -16.87939 -16.04490 -16.01509 -15.71375 -15.45342 -14.95591 -14.82576 -14.71884 -13.76613 -13.57485 -13.50771 -13.23866 -13.16570 -12.97811 -12.65536 -12.54391 -12.17299 -11.92985 -11.64871 -11.42815 -11.25897 -11.06252 -10.97226 -10.65733 -10.47623 -10.27815 -10.17206 -9.94553 -9.68287 -8.31821 -8.23356 -7.94612 -7.32773 -6.44313 -3.41661 1.27756 1.90598 2.92454 3.12623 3.23514 3.32969 3.38124 3.39292 3.50732 4.17999 4.26398 4.40463 4.75248 5.08478 5.31853 5.33651 5.43893 5.51383 5.52173 5.60836 5.75422 5.91336 6.00407 6.03655 6.21377 6.29808 6.37545 6.63120 6.69428 7.03483 7.10868 7.30432 7.42488 7.55907 7.74901 7.76152 8.01570 8.63014 8.81859 9.42882 9.97060 10.64332 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.007839 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.071887 B = 3571.109209 C = 5218.026397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.416 3.584 4 O -0.491 6.491 5 C 0.163 3.837 6 N -0.552 5.552 7 C -0.291 4.291 8 H 0.079 0.921 9 C 0.057 3.943 10 N -0.849 5.849 11 Si 0.862 3.138 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.157 3.843 16 C -0.062 4.062 17 C -0.065 4.065 18 C -0.096 4.096 19 C -0.038 4.038 20 C 0.273 3.727 21 N -0.448 5.448 22 C -0.121 4.121 23 C 0.111 3.889 24 F -0.147 7.147 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.265 0.735 31 H 0.037 0.963 32 H 0.123 0.877 33 H 0.182 0.818 34 H 0.123 0.877 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -5.664 3.949 7.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.294 6.294 3 C 0.255 3.745 4 O -0.375 6.375 5 C 0.031 3.969 6 N -0.270 5.270 7 C -0.416 4.416 8 H 0.097 0.903 9 C -0.145 4.145 10 N -0.488 5.488 11 Si 0.687 3.313 12 H -0.214 1.214 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.032 3.968 16 C -0.067 4.067 17 C -0.084 4.084 18 C -0.117 4.117 19 C -0.042 4.042 20 C -0.041 4.041 21 N -0.124 5.124 22 C -0.143 4.143 23 C 0.091 3.909 24 F -0.126 7.126 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.141 0.859 33 H 0.199 0.801 34 H 0.141 0.859 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.849 -4.304 4.381 6.770 hybrid contribution 0.091 -0.283 -0.878 0.927 sum -2.759 -4.587 3.503 6.396 Atomic orbital electron populations 1.23002 0.78884 1.02124 1.01715 1.86589 1.21751 1.35987 1.85061 1.26846 0.94795 0.80865 0.72036 1.90618 1.66815 1.36177 1.43924 1.20598 0.84904 0.88082 1.03272 1.44422 1.74784 1.05021 1.02751 1.18955 1.16219 1.19471 0.87001 0.90330 1.25043 0.97913 0.94771 0.96795 1.69917 1.31568 1.09515 1.37755 0.86978 0.82474 0.78341 0.83468 1.21360 1.21181 1.20103 1.21170 0.94672 0.94453 0.86469 1.21224 0.97583 0.95195 0.92650 1.21962 0.98755 0.93184 0.94467 1.21259 0.92476 0.99981 0.98018 1.15591 0.89975 0.91678 1.06964 1.25859 0.92714 0.92858 0.92639 1.81184 1.11086 1.09585 1.10528 1.20669 0.97508 0.92841 1.03244 1.17284 0.95386 0.77384 1.00844 1.91388 1.96721 1.32467 1.91983 0.92806 0.92836 0.89437 0.88434 0.89688 0.92481 0.94473 0.85923 0.80110 0.85869 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.38 -6.39 10.57 -39.25 -0.41 -6.80 16 3 C 0.42 8.02 6.32 36.00 0.23 8.24 16 4 O -0.49 -10.89 12.63 -18.75 -0.24 -11.12 16 5 C 0.16 2.97 6.23 -5.20 -0.03 2.94 16 6 N -0.55 -11.83 2.05 -175.99 -0.36 -12.19 16 7 C -0.29 -6.90 9.37 -15.06 -0.14 -7.04 16 8 H 0.08 1.98 8.06 -52.49 -0.42 1.56 16 9 C 0.06 1.32 5.10 -17.43 -0.09 1.23 16 10 N -0.85 -19.18 7.81 55.49 0.43 -18.74 16 11 Si 0.86 18.32 29.69 -169.99 -5.05 13.27 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 C 0.16 3.19 5.11 -5.19 -0.03 3.16 16 16 C -0.06 -1.24 4.97 -104.46 -0.52 -1.76 16 17 C -0.07 -1.26 9.30 -39.65 -0.37 -1.63 16 18 C -0.10 -1.66 9.75 -39.16 -0.38 -2.05 16 19 C -0.04 -0.65 5.73 -106.94 -0.61 -1.26 16 20 C 0.27 4.68 15.33 -22.46 -0.34 4.33 16 21 N -0.45 -8.13 18.54 41.86 0.78 -7.36 16 22 C -0.12 -2.13 9.73 -39.09 -0.38 -2.51 16 23 C 0.11 2.13 5.06 -39.48 -0.20 1.93 16 24 F -0.15 -2.80 14.06 2.25 0.03 -2.77 16 25 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.65 8.04 -51.93 -0.42 1.23 16 29 H 0.09 1.35 7.85 -51.93 -0.41 0.94 16 30 H 0.26 5.73 8.31 -40.82 -0.34 5.39 16 31 H 0.04 0.69 7.57 -51.93 -0.39 0.30 16 32 H 0.12 2.65 5.23 -51.93 -0.27 2.38 16 33 H 0.18 3.69 5.21 -52.48 -0.27 3.42 16 34 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -26.31 310.02 -5.38 -31.69 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.43 Total: 2.17 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.80 Total: 7.18 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.85 Total: -38.29 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.65 Total: -17.92 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.03 Total: -2.77 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.05 Total: 13.27 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.31 -5.38 -31.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.315 kcal (2) G-P(sol) polarization free energy of solvation -26.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds