Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99704 * 2 1 4 4 O 1.20825 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99701 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47014 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99281 * 276.28731 * 6 5 3 8 8 H 1.08005 * 119.99470 * 179.67723 * 7 6 5 9 9 C 1.38807 * 120.00222 * 359.67526 * 7 6 5 10 10 N 1.31614 * 120.00031 * 27.99635 * 9 7 6 11 11 Si 1.86802 * 119.99699 * 207.99138 * 9 7 6 12 12 H 1.48499 * 109.47133 * 60.00351 * 11 9 7 13 13 H 1.48506 * 109.47007 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47414 * 300.00185 * 11 9 7 15 15 C 1.46499 * 120.00204 * 96.28550 * 6 5 3 16 16 C 1.50690 * 109.47295 * 269.99974 * 15 6 5 17 17 C 1.37872 * 120.06545 * 259.73197 * 16 15 6 18 18 C 1.38622 * 120.12530 * 179.72420 * 17 16 15 19 19 F 1.35102 * 119.87372 * 180.27314 * 18 17 16 20 20 C 1.38654 * 120.25016 * 0.54947 * 18 17 16 21 21 C 1.37831 * 120.12816 * 359.72470 * 20 18 17 22 22 C 1.39665 * 120.06685 * 80.00031 * 16 15 6 23 23 C 1.43205 * 120.11789 * 0.02562 * 22 16 15 24 24 N 3.13405 * 111.20515 * 76.77921 * 2 1 3 25 25 H 1.08999 * 109.47249 * 300.00103 * 1 2 3 26 26 H 1.09002 * 109.47302 * 60.00090 * 1 2 3 27 27 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47294 * 59.99715 * 5 3 2 29 29 H 1.09002 * 109.46726 * 300.00135 * 5 3 2 30 30 H 0.97008 * 119.99887 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47225 * 30.00355 * 15 6 5 32 32 H 1.09001 * 109.46557 * 150.00285 * 15 6 5 33 33 H 1.08002 * 119.93540 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.93574 * 179.70509 * 20 18 17 35 35 H 1.08002 * 120.06487 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0507 3.3739 -1.1783 8 1 4.3519 4.4111 -1.1773 9 6 3.7336 2.7444 -2.3742 10 7 2.8812 1.7417 -2.3842 11 14 4.5169 3.3206 -3.9692 12 1 5.9926 3.1857 -3.8730 13 1 4.0158 2.4912 -5.0946 14 1 4.1644 4.7433 -4.2082 15 6 4.3231 3.3421 1.2615 16 6 3.0860 3.9695 1.8504 17 6 2.8597 5.3214 1.7022 18 6 1.7192 5.8988 2.2385 19 9 1.4998 7.2231 2.0854 20 6 0.8058 5.1234 2.9363 21 6 1.0245 3.7719 3.0955 22 6 2.1692 3.1836 2.5523 23 6 2.4021 1.7800 2.7148 24 7 2.5856 0.6682 2.8444 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9557 0.7810 -0.8908 29 1 3.9563 0.7806 0.8892 30 1 2.6593 1.3021 -3.2200 31 1 4.7260 2.6084 1.9597 32 1 5.0691 4.1148 1.0757 33 1 3.5702 5.9310 1.1637 34 1 -0.0787 5.5794 3.3560 35 1 0.3125 3.1690 3.6396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160517540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -33.580079 kcal Electronic energy + Delta-G solvation = -24224.918465 eV Core-core repulsion = 20525.587052 eV Total energy + Delta-G solvation = -3699.331413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.68091 -39.46803 -38.65090 -36.10611 -35.87060 -34.55931 -32.36822 -30.69548 -30.42457 -28.17655 -26.23968 -25.93831 -23.33850 -22.70910 -21.08889 -19.76491 -18.49788 -17.26190 -16.81309 -16.22831 -16.15420 -15.73513 -15.30574 -15.10723 -14.74300 -14.27553 -13.88343 -13.74103 -13.47577 -13.26951 -13.21450 -13.08555 -12.43814 -12.31242 -12.01309 -11.88763 -11.54599 -11.51475 -11.08416 -11.03567 -10.92269 -10.82603 -10.47835 -10.28314 -10.04514 -9.56238 -9.11028 -8.72600 -8.56211 -8.27584 -7.36569 -6.09806 -3.30178 1.03128 1.54018 3.07386 3.21663 3.30367 3.37488 3.38382 3.88664 3.99474 4.12824 4.37631 4.40521 4.46920 4.95953 5.03912 5.15460 5.27312 5.40523 5.64071 5.81535 5.82566 5.87876 6.06173 6.09558 6.11975 6.24348 6.28826 6.33454 6.41887 6.62253 6.77688 7.03440 7.09295 7.55086 7.79626 7.89035 7.95653 8.83626 9.37827 9.55437 9.91596 11.01013 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.008315 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.488714 B = 3366.663841 C = 4570.907666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.377 6.377 3 C 0.470 3.530 4 O -0.503 6.503 5 C 0.177 3.823 6 N -0.554 5.554 7 C -0.255 4.255 8 H 0.088 0.912 9 C 0.006 3.994 10 N -0.895 5.895 11 Si 0.911 3.089 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.168 3.832 16 C -0.005 4.005 17 C -0.142 4.142 18 C 0.123 3.877 19 F -0.142 7.142 20 C -0.173 4.173 21 C -0.042 4.042 22 C -0.028 4.028 23 C 0.258 3.742 24 N -0.418 5.418 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.053 0.947 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 3.110 9.308 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.295 6.295 3 C 0.310 3.690 4 O -0.388 6.388 5 C 0.048 3.952 6 N -0.271 5.271 7 C -0.383 4.383 8 H 0.105 0.895 9 C -0.192 4.192 10 N -0.539 5.539 11 Si 0.740 3.260 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.041 3.959 16 C -0.012 4.012 17 C -0.162 4.162 18 C 0.103 3.897 19 F -0.121 7.121 20 C -0.193 4.193 21 C -0.063 4.063 22 C -0.032 4.032 23 C -0.057 4.057 24 N -0.094 5.094 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.134 0.866 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.330 1.627 9.290 9.525 hybrid contribution -0.693 1.067 -1.295 1.815 sum -2.023 2.693 7.995 8.676 Atomic orbital electron populations 1.22798 0.80107 1.01139 1.00873 1.86559 1.20645 1.36655 1.85620 1.25146 0.93190 0.80348 0.70303 1.90485 1.66481 1.36159 1.45641 1.20904 0.86181 0.86220 1.01863 1.44732 1.73558 1.07164 1.01661 1.19319 1.39882 0.96518 0.82538 0.89452 1.24780 0.97752 0.98353 0.98324 1.69850 1.30735 1.26362 1.26936 0.86214 0.79612 0.77987 0.82213 1.20723 1.21643 1.20842 1.20271 0.91608 0.96399 0.87647 1.21042 0.98914 0.91894 0.89355 1.20849 0.97667 0.95178 1.02525 1.17904 0.95592 0.77426 0.98825 1.91477 1.94740 1.31944 1.93911 1.20759 1.00565 0.93947 1.03986 1.20776 0.94749 0.93929 0.96862 1.15819 0.97850 0.85316 1.04255 1.25590 0.93839 0.92859 0.93378 1.81138 1.07730 1.11415 1.09149 0.94058 0.92956 0.90320 0.86634 0.92926 0.92798 0.92274 0.90252 0.84321 0.84738 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 10.56 101.05 1.07 1.94 16 2 O -0.38 -8.71 10.57 -39.27 -0.41 -9.12 16 3 C 0.47 11.43 3.16 36.01 0.11 11.54 16 4 O -0.50 -13.17 13.54 -18.75 -0.25 -13.42 16 5 C 0.18 4.16 4.85 -5.19 -0.03 4.13 16 6 N -0.55 -12.67 2.07 -175.99 -0.36 -13.03 16 7 C -0.25 -6.37 9.51 -15.06 -0.14 -6.51 16 8 H 0.09 2.10 7.97 -52.48 -0.42 1.68 16 9 C 0.01 0.17 4.97 -17.43 -0.09 0.08 16 10 N -0.90 -24.50 8.78 55.49 0.49 -24.01 16 11 Si 0.91 20.71 29.64 -169.99 -5.04 15.67 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 15 C 0.17 3.08 5.40 -5.20 -0.03 3.05 16 16 C -0.01 -0.09 5.03 -104.23 -0.52 -0.61 16 17 C -0.14 -2.34 9.63 -39.57 -0.38 -2.72 16 18 C 0.12 1.90 7.31 -39.29 -0.29 1.61 16 19 F -0.14 -2.17 17.26 2.25 0.04 -2.13 16 20 C -0.17 -2.42 10.01 -39.58 -0.40 -2.82 16 21 C -0.04 -0.63 9.75 -39.18 -0.38 -1.01 16 22 C -0.03 -0.49 4.28 -106.89 -0.46 -0.94 16 23 C 0.26 4.80 10.24 -22.53 -0.23 4.57 16 24 N -0.42 -8.15 16.83 41.77 0.70 -7.45 16 25 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 26 H 0.05 1.05 8.13 -51.93 -0.42 0.62 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.12 2.96 6.23 -51.93 -0.32 2.63 16 29 H 0.05 1.15 6.27 -51.93 -0.33 0.82 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 31 H 0.06 1.00 7.19 -51.93 -0.37 0.63 16 32 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 33 H 0.14 2.10 8.03 -52.49 -0.42 1.68 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -30.24 307.11 -5.49 -35.74 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.52 Total: 0.81 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -1.76 Total: 12.31 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.83 Total: -44.49 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.67 Total: -22.54 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.04 Total: 15.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.24 -5.49 -35.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160517540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.158 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds