Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99704 * 2 1 4 4 O 1.20825 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99701 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47014 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99281 * 276.28731 * 6 5 3 8 8 H 1.08005 * 119.99470 * 179.67723 * 7 6 5 9 9 C 1.38807 * 120.00222 * 359.67526 * 7 6 5 10 10 N 1.31614 * 120.00031 * 27.99635 * 9 7 6 11 11 Si 1.86802 * 119.99699 * 207.99138 * 9 7 6 12 12 H 1.48499 * 109.47133 * 60.00351 * 11 9 7 13 13 H 1.48506 * 109.47007 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47414 * 300.00185 * 11 9 7 15 15 C 1.46499 * 120.00204 * 96.28550 * 6 5 3 16 16 C 1.50690 * 109.47295 * 269.99974 * 15 6 5 17 17 C 1.37872 * 120.06545 * 259.73197 * 16 15 6 18 18 C 1.38622 * 120.12530 * 179.72420 * 17 16 15 19 19 F 1.35102 * 119.87372 * 180.27314 * 18 17 16 20 20 C 1.38654 * 120.25016 * 0.54947 * 18 17 16 21 21 C 1.37831 * 120.12816 * 359.72470 * 20 18 17 22 22 C 1.39665 * 120.06685 * 80.00031 * 16 15 6 23 23 C 1.43205 * 120.11789 * 0.02562 * 22 16 15 24 24 N 3.13405 * 111.20515 * 76.77921 * 2 1 3 25 25 H 1.08999 * 109.47249 * 300.00103 * 1 2 3 26 26 H 1.09002 * 109.47302 * 60.00090 * 1 2 3 27 27 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47294 * 59.99715 * 5 3 2 29 29 H 1.09002 * 109.46726 * 300.00135 * 5 3 2 30 30 H 0.97008 * 119.99887 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47225 * 30.00355 * 15 6 5 32 32 H 1.09001 * 109.46557 * 150.00285 * 15 6 5 33 33 H 1.08002 * 119.93540 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.93574 * 179.70509 * 20 18 17 35 35 H 1.08002 * 120.06487 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0507 3.3739 -1.1783 8 1 4.3519 4.4111 -1.1773 9 6 3.7336 2.7444 -2.3742 10 7 2.8812 1.7417 -2.3842 11 14 4.5169 3.3206 -3.9692 12 1 5.9926 3.1857 -3.8730 13 1 4.0158 2.4912 -5.0946 14 1 4.1644 4.7433 -4.2082 15 6 4.3231 3.3421 1.2615 16 6 3.0860 3.9695 1.8504 17 6 2.8597 5.3214 1.7022 18 6 1.7192 5.8988 2.2385 19 9 1.4998 7.2231 2.0854 20 6 0.8058 5.1234 2.9363 21 6 1.0245 3.7719 3.0955 22 6 2.1692 3.1836 2.5523 23 6 2.4021 1.7800 2.7148 24 7 2.5856 0.6682 2.8444 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9557 0.7810 -0.8908 29 1 3.9563 0.7806 0.8892 30 1 2.6593 1.3021 -3.2200 31 1 4.7260 2.6084 1.9597 32 1 5.0691 4.1148 1.0757 33 1 3.5702 5.9310 1.1637 34 1 -0.0787 5.5794 3.3560 35 1 0.3125 3.1690 3.6396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160517540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -49.562552 kcal Electronic energy + Delta-G solvation = -24225.611517 eV Core-core repulsion = 20525.587052 eV Total energy + Delta-G solvation = -3700.024465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.89012 -41.04580 -40.19924 -37.73991 -37.37111 -36.38050 -33.98338 -32.18337 -31.80580 -29.87701 -27.76671 -27.64821 -24.66933 -24.26561 -22.54542 -21.56468 -19.81160 -18.92922 -18.27681 -17.93197 -17.54192 -17.40129 -16.88131 -16.55647 -16.49713 -15.59552 -15.54320 -15.28463 -14.82690 -14.71649 -14.66069 -14.50307 -13.99389 -13.90129 -13.49122 -13.44343 -13.18847 -12.95760 -12.71696 -12.68976 -12.52573 -12.24950 -12.10677 -12.07548 -11.86145 -11.34088 -10.95793 -10.47653 -9.94515 -9.58527 -9.16971 -8.01344 -5.22870 -0.25552 0.32268 1.49626 1.53389 1.59034 1.63955 1.86979 2.07069 2.31646 2.55218 2.76303 3.02868 3.19272 3.27669 3.58565 3.78461 3.86159 4.19859 4.31617 4.35871 4.38780 4.45135 4.53195 4.56454 4.74187 4.88099 4.91421 4.96395 5.12044 5.14542 5.20411 5.46543 5.63888 5.86979 5.99015 6.10525 6.46752 6.94406 7.52801 7.73910 8.07651 9.08574 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.008315 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.488714 B = 3366.663841 C = 4570.907666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.391 6.391 3 C 0.476 3.524 4 O -0.525 6.525 5 C 0.183 3.817 6 N -0.568 5.568 7 C -0.251 4.251 8 H 0.094 0.906 9 C -0.046 4.046 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.274 1.274 13 H -0.304 1.304 14 H -0.281 1.281 15 C 0.164 3.836 16 C -0.018 4.018 17 C -0.150 4.150 18 C 0.118 3.882 19 F -0.140 7.140 20 C -0.158 4.158 21 C -0.040 4.040 22 C -0.046 4.046 23 C 0.265 3.735 24 N -0.442 5.442 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.250 0.750 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 4.248 10.611 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.308 6.308 3 C 0.318 3.682 4 O -0.412 6.412 5 C 0.054 3.946 6 N -0.287 5.287 7 C -0.380 4.380 8 H 0.112 0.888 9 C -0.241 4.241 10 N -0.573 5.573 11 Si 0.796 3.204 12 H -0.200 1.200 13 H -0.230 1.230 14 H -0.208 1.208 15 C 0.038 3.962 16 C -0.024 4.024 17 C -0.169 4.169 18 C 0.098 3.902 19 F -0.118 7.118 20 C -0.177 4.177 21 C -0.060 4.060 22 C -0.050 4.050 23 C -0.049 4.049 24 N -0.119 5.119 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.136 0.864 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.991 2.791 10.639 11.178 hybrid contribution -0.532 0.788 -1.523 1.796 sum -2.523 3.579 9.116 10.113 Atomic orbital electron populations 1.23046 0.77937 1.03630 1.00427 1.86520 1.22857 1.36127 1.85343 1.25143 0.93353 0.80247 0.69476 1.90447 1.67032 1.36856 1.46868 1.20673 0.86090 0.86868 1.00956 1.44653 1.74070 1.07086 1.02853 1.19587 1.38361 0.96593 0.83432 0.88783 1.25410 0.98682 0.99145 1.00837 1.69987 1.32649 1.28166 1.26455 0.85334 0.79002 0.77058 0.79018 1.19981 1.23045 1.20754 1.20420 0.92415 0.97069 0.86258 1.20872 0.98269 0.92595 0.90669 1.20980 0.98472 0.94878 1.02595 1.18043 0.95680 0.77684 0.98804 1.91488 1.94679 1.31770 1.93885 1.21155 1.00904 0.93414 1.02184 1.21127 0.94147 0.94567 0.96182 1.16076 0.99000 0.84710 1.05208 1.25862 0.93211 0.93138 0.92658 1.81132 1.08484 1.12105 1.10140 0.93457 0.94378 0.86442 0.89250 0.91864 0.94046 0.91239 0.88397 0.83510 0.81216 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 10.56 113.37 1.20 2.83 16 2 O -0.39 -17.99 10.57 -51.45 -0.54 -18.54 16 3 C 0.48 23.23 3.16 71.24 0.23 23.46 16 4 O -0.53 -27.42 13.54 21.97 0.30 -27.12 16 5 C 0.18 8.71 4.85 85.63 0.42 9.12 16 6 N -0.57 -25.86 2.07 -710.70 -1.47 -27.33 16 7 C -0.25 -12.50 9.51 84.03 0.80 -11.70 16 8 H 0.09 4.45 7.97 -2.91 -0.02 4.42 16 9 C -0.05 -2.41 4.97 84.86 0.42 -1.99 16 10 N -0.93 -51.85 8.78 21.65 0.19 -51.66 16 11 Si 0.97 43.15 29.64 68.60 2.03 45.18 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.16 5.85 5.40 85.63 0.46 6.31 16 16 C -0.02 -0.61 5.03 -19.61 -0.10 -0.71 16 17 C -0.15 -4.63 9.63 22.27 0.21 -4.41 16 18 C 0.12 3.33 7.31 22.46 0.16 3.49 16 19 F -0.14 -3.87 17.26 44.97 0.78 -3.09 16 20 C -0.16 -3.83 10.01 22.27 0.22 -3.61 16 21 C -0.04 -1.06 9.75 22.53 0.22 -0.84 16 22 C -0.05 -1.51 4.28 -21.33 -0.09 -1.60 16 23 C 0.27 9.58 10.24 88.35 0.90 10.48 16 24 N -0.44 -16.91 16.83 18.98 0.32 -16.59 16 25 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.04 1.50 8.13 -2.39 -0.02 1.49 16 27 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 28 H 0.09 4.72 6.23 -2.39 -0.01 4.71 16 29 H 0.06 2.79 6.27 -2.39 -0.01 2.78 16 30 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 31 H 0.07 2.30 7.19 -2.39 -0.02 2.28 16 32 H 0.10 3.06 7.90 -2.39 -0.02 3.04 16 33 H 0.15 4.18 8.03 -2.91 -0.02 4.16 16 34 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -64.84 307.11 7.79 -57.05 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.13 Total: 11.27 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 5.06 Total: 30.82 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -0.96 Total: -95.58 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.25 Total: -45.65 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.84 7.79 -57.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160517540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.486 kcal (2) G-P(sol) polarization free energy of solvation -64.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds