Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99393 * 2 1 4 4 H 1.08000 * 119.99617 * 203.55075 * 3 2 1 5 5 C 1.38812 * 120.00231 * 23.55853 * 3 2 1 6 6 N 1.31620 * 119.99813 * 14.41816 * 5 3 2 7 7 Si 1.86795 * 120.00005 * 194.42852 * 5 3 2 8 8 H 1.48498 * 109.47381 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47112 * 119.99712 * 7 5 3 10 10 H 1.48506 * 109.47101 * 239.99581 * 7 5 3 11 11 C 1.46495 * 120.00584 * 180.02562 * 2 1 3 12 12 C 1.50710 * 109.46829 * 270.00052 * 11 2 1 13 13 O 1.21298 * 119.99681 * 1.92069 * 12 11 2 14 14 N 1.34771 * 119.99523 * 181.92595 * 12 11 2 15 15 C 1.45997 * 118.61530 * 353.42560 * 14 12 11 16 16 C 1.53586 * 108.64270 * 233.77187 * 15 14 12 17 17 S 1.81665 * 107.82409 * 294.21539 * 16 15 14 18 18 C 1.76397 * 102.57055 * 47.13028 * 17 16 15 19 19 C 1.39093 * 118.86927 * 163.83936 * 18 17 16 20 20 C 1.38050 * 120.28758 * 179.35588 * 19 18 17 21 21 C 1.38302 * 119.91614 * 359.96765 * 20 19 18 22 22 C 1.37989 * 120.17660 * 0.17590 * 21 20 19 23 23 C 1.39077 * 121.19413 * 343.51391 * 18 17 16 24 24 H 1.08998 * 109.47069 * 270.88690 * 1 2 3 25 25 H 1.08996 * 109.47521 * 30.89862 * 1 2 3 26 26 H 1.09005 * 109.46457 * 150.89451 * 1 2 3 27 27 H 0.96997 * 120.00020 * 180.02562 * 6 5 3 28 28 H 1.08995 * 109.47598 * 149.99883 * 11 2 1 29 29 H 1.09000 * 109.46960 * 29.99155 * 11 2 1 30 30 H 1.09000 * 109.60968 * 353.52367 * 15 14 12 31 31 H 1.08997 * 109.60662 * 114.02719 * 15 14 12 32 32 H 1.08999 * 109.78578 * 53.80404 * 16 15 14 33 33 H 1.08995 * 109.78694 * 174.57991 * 16 15 14 34 34 H 1.07994 * 119.85371 * 359.30815 * 19 18 17 35 35 H 1.08004 * 120.04402 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.91454 * 180.19963 * 21 20 19 37 37 H 1.07999 * 119.77305 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1621 1.2250 -0.3737 5 6 1.5422 2.3380 0.4805 6 7 0.4364 2.2524 1.1891 7 14 2.2942 4.0097 0.1211 8 1 3.5266 3.8345 -0.6886 9 1 1.3199 4.8391 -0.6326 10 1 2.6342 4.6847 1.3995 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7042 1.4202 13 8 2.0244 -1.0401 2.3421 14 7 3.1451 -2.8316 1.6661 15 6 3.5164 -3.6838 0.5403 16 6 3.0230 -5.1109 0.8211 17 16 3.9475 -5.7479 2.2493 18 6 3.8465 -4.4133 3.3983 19 6 4.1471 -4.6537 4.7349 20 6 4.0905 -3.6276 5.6567 21 6 3.7341 -2.3545 5.2506 22 6 3.4315 -2.1078 3.9271 23 6 3.4807 -3.1357 2.9881 24 1 -0.3633 0.0159 1.0275 25 1 -0.3634 0.8818 -0.5277 26 1 -0.3632 -0.8980 -0.4999 27 1 0.0117 3.0574 1.5245 28 1 3.1500 -1.1380 -0.5143 29 1 1.6085 -2.0281 -0.5146 30 1 3.0513 -3.3087 -0.3714 31 1 4.6003 -3.6873 0.4261 32 1 1.9571 -5.0947 1.0487 33 1 3.2050 -5.7420 -0.0487 34 1 4.4252 -5.6475 5.0530 35 1 4.3243 -3.8187 6.6936 36 1 3.6930 -1.5510 5.9712 37 1 3.1545 -1.1111 3.6171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170778388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = 49.660782 kcal Electronic energy + Delta-G solvation = -21423.599368 eV Core-core repulsion = 18294.090726 eV Total energy + Delta-G solvation = -3129.508642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55413 -38.02619 -36.04238 -35.19480 -31.63641 -31.13918 -30.68864 -29.67474 -27.08204 -25.85948 -23.80977 -23.05350 -22.38309 -21.27875 -19.20142 -17.48172 -17.05143 -16.73946 -16.69001 -15.75549 -15.15680 -14.79225 -14.53328 -14.13684 -13.74648 -13.49820 -13.42631 -13.16269 -13.06235 -12.86306 -12.54236 -12.36607 -11.81758 -11.51790 -11.32778 -11.07884 -10.90821 -10.73822 -10.49766 -10.30166 -10.07371 -10.00277 -9.91944 -9.42187 -8.95133 -8.55157 -7.87959 -7.24021 -6.86903 -5.80001 -3.27649 1.31274 1.55368 1.60044 2.33007 3.01758 3.18313 3.35338 3.41687 3.43925 3.97620 4.42889 4.51132 4.71678 4.94397 4.97712 5.11618 5.25995 5.32962 5.43925 5.44931 5.55829 5.61598 5.68052 5.75484 5.92454 6.06922 6.14261 6.39022 6.46429 6.63651 6.74040 6.84887 7.26108 7.32749 7.53986 7.69452 7.74619 8.27749 8.72531 9.11589 9.73011 10.20663 11.24909 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.004870 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.833055 B = 5748.184273 C = 6522.804702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.567 5.567 3 C -0.269 4.269 4 H 0.071 0.929 5 C 0.014 3.986 6 N -0.889 5.889 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.287 1.287 10 H -0.289 1.289 11 C 0.133 3.867 12 C 0.466 3.534 13 O -0.471 6.471 14 N -0.573 5.573 15 C 0.103 3.897 16 C -0.122 4.122 17 S -0.130 6.130 18 C -0.130 4.130 19 C -0.083 4.083 20 C -0.139 4.139 21 C -0.100 4.100 22 C -0.136 4.136 23 C 0.166 3.834 24 H 0.032 0.968 25 H 0.053 0.947 26 H -0.002 1.002 27 H 0.254 0.746 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -15.214 0.481 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.286 5.286 3 C -0.398 4.398 4 H 0.088 0.912 5 C -0.187 4.187 6 N -0.531 5.531 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.216 1.216 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.341 6.341 14 N -0.300 5.300 15 C -0.021 4.021 16 C -0.271 4.271 17 S 0.110 5.890 18 C -0.245 4.245 19 C -0.106 4.106 20 C -0.160 4.160 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.066 3.934 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.404 -15.717 0.926 16.997 hybrid contribution -0.193 1.903 0.123 1.917 sum 6.211 -13.814 1.049 15.182 Atomic orbital electron populations 1.20872 0.81820 0.96367 0.99383 1.43970 1.02143 0.99667 1.82828 1.19182 0.99362 0.84857 1.36411 0.91151 1.25109 0.97914 0.98783 0.96904 1.70118 1.20219 1.27378 1.35408 0.86193 0.78598 0.84107 0.77636 1.20154 1.21406 1.21583 1.21205 0.98291 0.90599 0.89886 1.24439 0.75781 0.78169 0.96315 1.90534 1.46154 1.52051 1.45399 1.46419 1.54700 1.24864 1.04017 1.21916 1.01580 0.88606 0.90022 1.24069 1.03289 1.00112 0.99630 1.85213 1.69280 1.22581 1.11894 1.21062 1.12097 0.93911 0.97400 1.20560 1.00513 0.99250 0.90261 1.20956 1.02821 0.93187 0.99021 1.21155 0.98086 0.96822 0.95953 1.22446 0.99448 1.01439 0.92419 1.17783 0.98293 0.92025 0.85332 0.94985 0.92863 0.98335 0.93611 0.90301 0.91130 0.87060 0.89710 0.88657 0.85875 0.85822 0.85989 0.85816 0.81068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 9.03 59.85 0.54 4.45 16 2 N -0.57 -13.95 2.41 -182.50 -0.44 -14.39 16 3 C -0.27 -7.27 9.64 -15.06 -0.15 -7.42 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.43 16 5 C 0.01 0.38 5.03 -17.43 -0.09 0.29 16 6 N -0.89 -26.18 10.86 55.49 0.60 -25.58 16 7 Si 0.91 21.69 29.58 -169.99 -5.03 16.66 16 8 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.13 2.54 4.50 -5.19 -0.02 2.52 16 12 C 0.47 9.44 7.49 -10.98 -0.08 9.36 16 13 O -0.47 -11.80 12.89 5.54 0.07 -11.73 16 14 N -0.57 -9.53 2.87 -113.35 -0.33 -9.86 16 15 C 0.10 1.21 6.08 -4.01 -0.02 1.19 16 16 C -0.12 -1.26 6.68 37.46 0.25 -1.01 16 17 S -0.13 -1.63 22.12 -107.50 -2.38 -4.01 16 18 C -0.13 -1.99 6.07 -38.95 -0.24 -2.23 16 19 C -0.08 -1.15 9.72 -39.33 -0.38 -1.53 16 20 C -0.14 -1.89 10.05 -39.63 -0.40 -2.28 16 21 C -0.10 -1.56 10.03 -39.65 -0.40 -1.96 16 22 C -0.14 -2.56 8.60 -39.27 -0.34 -2.89 16 23 C 0.17 2.92 6.31 -83.54 -0.53 2.40 16 24 H 0.03 0.88 7.57 -51.93 -0.39 0.48 16 25 H 0.05 1.37 7.13 -51.93 -0.37 1.00 16 26 H 0.00 -0.04 7.88 -51.93 -0.41 -0.45 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 29 H 0.07 1.11 7.15 -51.93 -0.37 0.74 16 30 H 0.11 1.08 5.66 -51.93 -0.29 0.79 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 37 H 0.17 3.79 5.01 -54.43 -0.27 3.52 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -33.09 314.37 -9.22 -42.31 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.61 Total: 0.97 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.85 Total: 0.88 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.16 Total: -49.82 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.38 Total: -4.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.09 -9.22 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.971 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds