Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99393 * 2 1 4 4 H 1.08000 * 119.99617 * 203.55075 * 3 2 1 5 5 C 1.38812 * 120.00231 * 23.55853 * 3 2 1 6 6 N 1.31620 * 119.99813 * 14.41816 * 5 3 2 7 7 Si 1.86795 * 120.00005 * 194.42852 * 5 3 2 8 8 H 1.48498 * 109.47381 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47112 * 119.99712 * 7 5 3 10 10 H 1.48506 * 109.47101 * 239.99581 * 7 5 3 11 11 C 1.46495 * 120.00584 * 180.02562 * 2 1 3 12 12 C 1.50710 * 109.46829 * 270.00052 * 11 2 1 13 13 O 1.21298 * 119.99681 * 1.92069 * 12 11 2 14 14 N 1.34771 * 119.99523 * 181.92595 * 12 11 2 15 15 C 1.45997 * 118.61530 * 353.42560 * 14 12 11 16 16 C 1.53586 * 108.64270 * 233.77187 * 15 14 12 17 17 S 1.81665 * 107.82409 * 294.21539 * 16 15 14 18 18 C 1.76397 * 102.57055 * 47.13028 * 17 16 15 19 19 C 1.39093 * 118.86927 * 163.83936 * 18 17 16 20 20 C 1.38050 * 120.28758 * 179.35588 * 19 18 17 21 21 C 1.38302 * 119.91614 * 359.96765 * 20 19 18 22 22 C 1.37989 * 120.17660 * 0.17590 * 21 20 19 23 23 C 1.39077 * 121.19413 * 343.51391 * 18 17 16 24 24 H 1.08998 * 109.47069 * 270.88690 * 1 2 3 25 25 H 1.08996 * 109.47521 * 30.89862 * 1 2 3 26 26 H 1.09005 * 109.46457 * 150.89451 * 1 2 3 27 27 H 0.96997 * 120.00020 * 180.02562 * 6 5 3 28 28 H 1.08995 * 109.47598 * 149.99883 * 11 2 1 29 29 H 1.09000 * 109.46960 * 29.99155 * 11 2 1 30 30 H 1.09000 * 109.60968 * 353.52367 * 15 14 12 31 31 H 1.08997 * 109.60662 * 114.02719 * 15 14 12 32 32 H 1.08999 * 109.78578 * 53.80404 * 16 15 14 33 33 H 1.08995 * 109.78694 * 174.57991 * 16 15 14 34 34 H 1.07994 * 119.85371 * 359.30815 * 19 18 17 35 35 H 1.08004 * 120.04402 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.91454 * 180.19963 * 21 20 19 37 37 H 1.07999 * 119.77305 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1621 1.2250 -0.3737 5 6 1.5422 2.3380 0.4805 6 7 0.4364 2.2524 1.1891 7 14 2.2942 4.0097 0.1211 8 1 3.5266 3.8345 -0.6886 9 1 1.3199 4.8391 -0.6326 10 1 2.6342 4.6847 1.3995 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7042 1.4202 13 8 2.0244 -1.0401 2.3421 14 7 3.1451 -2.8316 1.6661 15 6 3.5164 -3.6838 0.5403 16 6 3.0230 -5.1109 0.8211 17 16 3.9475 -5.7479 2.2493 18 6 3.8465 -4.4133 3.3983 19 6 4.1471 -4.6537 4.7349 20 6 4.0905 -3.6276 5.6567 21 6 3.7341 -2.3545 5.2506 22 6 3.4315 -2.1078 3.9271 23 6 3.4807 -3.1357 2.9881 24 1 -0.3633 0.0159 1.0275 25 1 -0.3634 0.8818 -0.5277 26 1 -0.3632 -0.8980 -0.4999 27 1 0.0117 3.0574 1.5245 28 1 3.1500 -1.1380 -0.5143 29 1 1.6085 -2.0281 -0.5146 30 1 3.0513 -3.3087 -0.3714 31 1 4.6003 -3.6873 0.4261 32 1 1.9571 -5.0947 1.0487 33 1 3.2050 -5.7420 -0.0487 34 1 4.4252 -5.6475 5.0530 35 1 4.3243 -3.8187 6.6936 36 1 3.6930 -1.5510 5.9712 37 1 3.1545 -1.1111 3.6171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = 29.464469 kcal Electronic energy + Delta-G solvation = -21424.475146 eV Core-core repulsion = 18294.090726 eV Total energy + Delta-G solvation = -3130.384420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91606 -39.36754 -37.40824 -36.99348 -33.45917 -32.35428 -31.87339 -31.01606 -28.67596 -27.87622 -24.85708 -24.49590 -23.73132 -22.81780 -20.61154 -18.87408 -18.60909 -18.25357 -17.91162 -16.92442 -16.90748 -16.23410 -15.75117 -15.59044 -15.44479 -14.93641 -14.84278 -14.47079 -14.32548 -14.07379 -13.82512 -13.56695 -13.42242 -13.18178 -12.83547 -12.70827 -12.53797 -12.28495 -12.14342 -12.07957 -11.89201 -11.31870 -11.18591 -10.76357 -10.58018 -10.35818 -9.12287 -8.84474 -8.30584 -7.87073 -5.37068 0.13226 0.35081 0.56928 1.33042 1.43263 1.44865 1.55404 1.71846 1.79730 2.47889 2.75820 3.27196 3.57423 3.59009 3.62231 3.94733 4.07573 4.12604 4.18274 4.37031 4.43191 4.50118 4.55379 4.57671 4.59774 4.77114 4.78405 4.95168 5.11540 5.24307 5.30261 5.55935 5.58255 5.61101 5.68483 6.03840 6.18789 6.33101 7.06960 7.24194 7.77779 8.19969 9.17145 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.004870 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.833055 B = 5748.184273 C = 6522.804702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.587 5.587 3 C -0.269 4.269 4 H 0.078 0.922 5 C -0.048 4.048 6 N -0.930 5.930 7 Si 0.968 3.032 8 H -0.259 1.259 9 H -0.286 1.286 10 H -0.300 1.300 11 C 0.132 3.868 12 C 0.465 3.535 13 O -0.532 6.532 14 N -0.567 5.567 15 C 0.093 3.907 16 C -0.116 4.116 17 S -0.114 6.114 18 C -0.138 4.138 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.170 4.170 23 C 0.141 3.859 24 H -0.012 1.012 25 H 0.028 0.972 26 H 0.041 0.959 27 H 0.246 0.754 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 -18.275 -0.689 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.306 5.306 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.244 4.244 6 N -0.575 5.575 7 Si 0.796 3.204 8 H -0.183 1.183 9 H -0.213 1.213 10 H -0.228 1.228 11 C 0.001 3.999 12 C 0.253 3.747 13 O -0.407 6.407 14 N -0.293 5.293 15 C -0.030 4.030 16 C -0.265 4.265 17 S 0.126 5.874 18 C -0.253 4.253 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.131 4.131 22 C -0.191 4.191 23 C 0.041 3.959 24 H 0.007 0.993 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.154 0.846 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.234 -18.862 -0.280 20.583 hybrid contribution -0.650 2.627 0.509 2.754 sum 7.584 -16.235 0.229 17.921 Atomic orbital electron populations 1.20580 0.82374 0.97153 0.96863 1.44100 1.02255 1.00991 1.83292 1.19561 0.99406 0.86135 1.34795 0.90465 1.25902 0.98713 1.02312 0.97500 1.70313 1.22088 1.27523 1.37564 0.85206 0.78361 0.79926 0.76927 1.18321 1.21255 1.22774 1.21454 0.99630 0.89424 0.89428 1.24228 0.75710 0.78735 0.95983 1.90565 1.48886 1.54274 1.46943 1.46204 1.53542 1.24428 1.05175 1.22331 1.02826 0.88753 0.89065 1.24212 1.02472 0.99655 1.00121 1.85142 1.69401 1.20837 1.11991 1.21412 1.10837 0.93998 0.99073 1.21034 0.99232 1.00604 0.89758 1.21341 1.00725 0.91816 1.00859 1.21336 0.98252 0.98535 0.94949 1.22202 1.02067 1.00361 0.94509 1.17857 0.99892 0.92810 0.85382 0.99340 0.95288 0.94077 0.94480 0.87868 0.86820 0.84573 0.88379 0.89249 0.81617 0.82875 0.82314 0.84930 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.74 9.03 127.77 1.15 9.90 16 2 N -0.59 -28.96 2.41 -731.30 -1.76 -30.72 16 3 C -0.27 -14.72 9.64 84.03 0.81 -13.91 16 4 H 0.08 4.02 7.86 -2.91 -0.02 4.00 16 5 C -0.05 -2.76 5.03 84.86 0.43 -2.34 16 6 N -0.93 -57.60 10.86 21.65 0.24 -57.36 16 7 Si 0.97 45.82 29.58 68.60 2.03 47.85 16 8 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 10 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 11 C 0.13 4.81 4.50 85.64 0.39 5.20 16 12 C 0.46 19.00 7.49 87.66 0.66 19.66 16 13 O -0.53 -28.21 12.89 -3.09 -0.04 -28.25 16 14 N -0.57 -18.39 2.87 -630.93 -1.81 -20.20 16 15 C 0.09 1.87 6.08 86.67 0.53 2.39 16 16 C -0.12 -1.93 6.68 72.18 0.48 -1.45 16 17 S -0.11 -2.47 22.12 -56.49 -1.25 -3.72 16 18 C -0.14 -4.00 6.07 22.68 0.14 -3.86 16 19 C -0.08 -2.09 9.72 22.43 0.22 -1.87 16 20 C -0.13 -3.19 10.05 22.24 0.22 -2.96 16 21 C -0.11 -3.50 10.03 22.23 0.22 -3.28 16 22 C -0.17 -6.70 8.60 22.47 0.19 -6.50 16 23 C 0.14 4.94 6.31 38.34 0.24 5.19 16 24 H -0.01 -0.69 7.57 -2.39 -0.02 -0.71 16 25 H 0.03 1.53 7.13 -2.39 -0.02 1.52 16 26 H 0.04 1.65 7.88 -2.38 -0.02 1.63 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.10 3.26 7.92 -2.39 -0.02 3.24 16 29 H 0.11 3.14 7.15 -2.39 -0.02 3.13 16 30 H 0.14 2.03 5.66 -2.39 -0.01 2.01 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.17 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.13 6.27 5.01 -33.62 -0.17 6.10 16 Total: -1.00 -78.26 314.37 4.01 -74.25 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.93 Total: 12.00 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.68 Total: 6.15 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -3.34 Total: -108.28 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.04 Total: -28.25 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -1.25 Total: -3.72 kcal Total: -78.26 4.01 -74.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.716 kcal (2) G-P(sol) polarization free energy of solvation -78.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds