Wall clock time and date at job start Tue Mar 31 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 117.00140 * 2 1 4 4 O 1.20834 * 119.99462 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00136 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47118 * 179.97438 * 5 3 2 7 7 C 1.36933 * 120.00028 * 264.45785 * 6 5 3 8 8 H 1.08004 * 120.00025 * 189.42469 * 7 6 5 9 9 C 1.38818 * 120.00219 * 9.42523 * 7 6 5 10 10 N 1.31618 * 119.99637 * 26.99299 * 9 7 6 11 11 Si 1.86801 * 120.00191 * 206.99239 * 9 7 6 12 12 H 1.48499 * 109.46939 * 59.99988 * 11 9 7 13 13 H 1.48493 * 109.46995 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46744 * 299.99936 * 11 9 7 15 15 C 1.46499 * 120.00030 * 84.45510 * 6 5 3 16 16 C 1.50706 * 109.47061 * 89.99992 * 15 6 5 17 17 C 1.37976 * 120.05425 * 259.72634 * 16 15 6 18 18 C 1.38300 * 120.17926 * 179.74803 * 17 16 15 19 19 C 1.38601 * 120.27893 * 0.54696 * 18 17 16 20 20 F 1.35099 * 119.94971 * 179.72689 * 19 18 17 21 21 C 1.38163 * 120.10058 * 359.70708 * 19 18 17 22 22 C 1.39620 * 120.04698 * 79.99953 * 16 15 6 23 23 C 1.43197 * 120.14015 * 0.02562 * 22 16 15 24 24 N 7.39508 * 128.64664 * 354.67705 * 2 1 3 25 25 H 1.09001 * 109.46899 * 60.00316 * 1 2 3 26 26 H 1.08992 * 109.46837 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47114 * 300.00480 * 1 2 3 28 28 H 1.08995 * 109.47444 * 59.99895 * 5 3 2 29 29 H 1.08995 * 109.46925 * 299.99433 * 5 3 2 30 30 H 0.96999 * 120.00298 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47532 * 210.00209 * 15 6 5 32 32 H 1.08995 * 109.47492 * 330.00550 * 15 6 5 33 33 H 1.07999 * 119.90821 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.86218 * 180.25700 * 18 17 16 35 35 H 1.07999 * 120.08833 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2852 3.3036 -1.1817 8 1 4.7351 4.2855 -1.1736 9 6 4.0147 2.6741 -2.3890 10 7 3.0419 1.7910 -2.4671 11 14 5.0312 3.0803 -3.9026 12 1 6.4573 2.7587 -3.6420 13 1 4.5459 2.2786 -5.0545 14 1 4.8987 4.5262 -4.2143 15 6 4.0723 3.4173 1.2615 16 6 5.4596 3.2692 1.8313 17 6 5.6976 2.3628 2.8440 18 6 6.9708 2.2211 3.3652 19 6 8.0138 2.9958 2.8825 20 9 9.2537 2.8558 3.4003 21 6 7.7874 3.9108 1.8723 22 6 6.5049 4.0532 1.3391 23 6 6.2624 5.0001 0.2926 24 7 6.0704 5.7507 -0.5358 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7807 0.8892 30 1 2.8530 1.3508 -3.3105 31 1 3.8639 4.4720 1.0820 32 1 3.3449 3.0184 1.9683 33 1 4.8882 1.7598 3.2281 34 1 7.1521 1.5071 4.1549 35 1 8.6003 4.5141 1.4960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177621366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:25 Heat of formation + Delta-G solvation = -36.687765 kcal Electronic energy + Delta-G solvation = -23240.164350 eV Core-core repulsion = 19540.698178 eV Total energy + Delta-G solvation = -3699.466172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.84590 -39.48676 -38.97669 -36.17140 -35.86975 -34.70148 -32.21819 -31.32424 -30.32424 -28.18982 -26.20054 -25.83999 -23.90252 -22.62990 -21.16684 -19.84772 -18.89883 -17.15654 -16.45486 -16.37781 -16.01720 -15.78668 -15.57426 -15.34608 -14.99346 -14.87324 -13.90264 -13.77259 -13.71317 -13.35637 -13.12706 -12.83723 -12.61677 -12.32647 -12.29623 -11.78864 -11.65909 -11.50229 -11.23720 -11.19230 -10.97650 -10.80284 -10.52613 -10.18174 -9.80442 -9.74553 -9.32058 -8.97985 -8.58310 -8.44992 -7.26810 -6.02494 -3.28783 0.85616 1.24262 3.13838 3.18266 3.36111 3.40717 3.44947 3.70598 3.88783 3.99075 4.13849 4.44173 4.48012 4.86974 4.94155 5.02708 5.23518 5.29186 5.37763 5.70180 5.72304 5.77611 5.89754 6.00050 6.03531 6.09599 6.17206 6.23537 6.37273 6.61661 6.63359 6.85737 6.98984 7.58867 7.70592 7.97953 8.04154 8.90406 9.23021 9.59606 9.98882 11.08179 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.006462 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.406741 B = 4331.704788 C = 5702.741197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.380 6.380 3 C 0.461 3.539 4 O -0.509 6.509 5 C 0.182 3.818 6 N -0.556 5.556 7 C -0.273 4.273 8 H 0.096 0.904 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.280 1.280 15 C 0.172 3.828 16 C -0.045 4.045 17 C -0.088 4.088 18 C -0.128 4.128 19 C 0.082 3.918 20 F -0.142 7.142 21 C -0.111 4.111 22 C 0.021 3.979 23 C 0.263 3.737 24 N -0.403 5.403 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.124 0.876 29 H 0.055 0.945 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -3.522 12.351 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.298 6.298 3 C 0.302 3.698 4 O -0.394 6.394 5 C 0.053 3.947 6 N -0.274 5.274 7 C -0.401 4.401 8 H 0.113 0.887 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.206 1.206 15 C 0.045 3.955 16 C -0.051 4.051 17 C -0.107 4.107 18 C -0.147 4.147 19 C 0.063 3.937 20 F -0.120 7.120 21 C -0.133 4.133 22 C 0.017 3.983 23 C -0.053 4.053 24 N -0.078 5.078 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.268 -2.111 10.887 11.882 hybrid contribution 0.338 -0.169 -0.725 0.818 sum 4.607 -2.279 10.161 11.387 Atomic orbital electron populations 1.22883 0.79682 1.01476 1.01314 1.86555 1.21079 1.36575 1.85560 1.25715 0.93641 0.80228 0.70238 1.90487 1.66803 1.36541 1.45554 1.20591 0.85230 0.86577 1.02337 1.44019 1.74305 1.07434 1.01609 1.19712 1.34782 1.02942 0.82616 0.88656 1.24715 0.97160 0.99440 0.97652 1.69995 1.26500 1.31334 1.26189 0.86426 0.80725 0.78154 0.82256 1.20824 1.21500 1.20632 1.19874 0.88920 0.97923 0.88771 1.21313 0.98527 0.92531 0.92729 1.20867 0.96280 0.97702 0.95866 1.21279 0.92346 0.99768 1.01344 1.17309 0.80198 0.99449 0.96752 1.91492 1.39660 1.95094 1.85793 1.21015 0.96732 0.99048 0.96482 1.15578 0.93324 0.95666 0.93713 1.25105 0.93936 0.93057 0.93156 1.81088 1.06580 1.11352 1.08809 0.92839 0.89996 0.93522 0.85878 0.92721 0.93092 0.91691 0.92024 0.84325 0.84531 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.56 101.05 1.07 1.76 16 2 O -0.38 -7.82 10.57 -39.27 -0.41 -8.24 16 3 C 0.46 10.65 6.38 36.00 0.23 10.88 16 4 O -0.51 -13.34 16.13 -18.76 -0.30 -13.64 16 5 C 0.18 3.95 5.50 -5.19 -0.03 3.92 16 6 N -0.56 -12.62 2.01 -175.99 -0.35 -12.98 16 7 C -0.27 -7.09 9.01 -15.06 -0.14 -7.23 16 8 H 0.10 2.48 4.33 -52.48 -0.23 2.26 16 9 C 0.01 0.24 4.82 -17.43 -0.08 0.16 16 10 N -0.90 -24.86 9.60 55.49 0.53 -24.33 16 11 Si 0.90 22.07 29.63 -169.99 -5.04 17.04 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 15 C 0.17 3.19 5.39 -5.19 -0.03 3.16 16 16 C -0.05 -0.68 5.50 -104.20 -0.57 -1.26 16 17 C -0.09 -1.05 9.65 -39.65 -0.38 -1.43 16 18 C -0.13 -1.37 10.02 -39.42 -0.39 -1.77 16 19 C 0.08 0.99 7.29 -39.48 -0.29 0.70 16 20 F -0.14 -1.71 17.26 2.25 0.04 -1.68 16 21 C -0.11 -1.44 9.74 -39.09 -0.38 -1.82 16 22 C 0.02 0.33 5.73 -106.94 -0.61 -0.28 16 23 C 0.26 4.85 11.93 -22.53 -0.27 4.58 16 24 N -0.40 -8.40 16.87 41.77 0.70 -7.70 16 25 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 28 H 0.12 2.96 6.03 -51.93 -0.31 2.65 16 29 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.06 1.29 7.37 -51.93 -0.38 0.91 16 32 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 33 H 0.14 1.35 8.03 -52.49 -0.42 0.93 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -31.88 315.54 -5.38 -37.27 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.43 Total: -1.88 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -1.88 Total: 11.38 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.88 Total: -45.00 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.72 Total: -21.88 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.04 Total: 17.04 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.88 -5.38 -37.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177621366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.578 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds