Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 117.00140 * 2 1 4 4 O 1.20834 * 119.99462 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00136 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47118 * 179.97438 * 5 3 2 7 7 C 1.36933 * 120.00028 * 264.45785 * 6 5 3 8 8 H 1.08004 * 120.00025 * 189.42469 * 7 6 5 9 9 C 1.38818 * 120.00219 * 9.42523 * 7 6 5 10 10 N 1.31618 * 119.99637 * 26.99299 * 9 7 6 11 11 Si 1.86801 * 120.00191 * 206.99239 * 9 7 6 12 12 H 1.48499 * 109.46939 * 59.99988 * 11 9 7 13 13 H 1.48493 * 109.46995 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46744 * 299.99936 * 11 9 7 15 15 C 1.46499 * 120.00030 * 84.45510 * 6 5 3 16 16 C 1.50706 * 109.47061 * 89.99992 * 15 6 5 17 17 C 1.37976 * 120.05425 * 259.72634 * 16 15 6 18 18 C 1.38300 * 120.17926 * 179.74803 * 17 16 15 19 19 C 1.38601 * 120.27893 * 0.54696 * 18 17 16 20 20 F 1.35099 * 119.94971 * 179.72689 * 19 18 17 21 21 C 1.38163 * 120.10058 * 359.70708 * 19 18 17 22 22 C 1.39620 * 120.04698 * 79.99953 * 16 15 6 23 23 C 1.43197 * 120.14015 * 0.02562 * 22 16 15 24 24 N 7.39508 * 128.64664 * 354.67705 * 2 1 3 25 25 H 1.09001 * 109.46899 * 60.00316 * 1 2 3 26 26 H 1.08992 * 109.46837 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47114 * 300.00480 * 1 2 3 28 28 H 1.08995 * 109.47444 * 59.99895 * 5 3 2 29 29 H 1.08995 * 109.46925 * 299.99433 * 5 3 2 30 30 H 0.96999 * 120.00298 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47532 * 210.00209 * 15 6 5 32 32 H 1.08995 * 109.47492 * 330.00550 * 15 6 5 33 33 H 1.07999 * 119.90821 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.86218 * 180.25700 * 18 17 16 35 35 H 1.07999 * 120.08833 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2852 3.3036 -1.1817 8 1 4.7351 4.2855 -1.1736 9 6 4.0147 2.6741 -2.3890 10 7 3.0419 1.7910 -2.4671 11 14 5.0312 3.0803 -3.9026 12 1 6.4573 2.7587 -3.6420 13 1 4.5459 2.2786 -5.0545 14 1 4.8987 4.5262 -4.2143 15 6 4.0723 3.4173 1.2615 16 6 5.4596 3.2692 1.8313 17 6 5.6976 2.3628 2.8440 18 6 6.9708 2.2211 3.3652 19 6 8.0138 2.9958 2.8825 20 9 9.2537 2.8558 3.4003 21 6 7.7874 3.9108 1.8723 22 6 6.5049 4.0532 1.3391 23 6 6.2624 5.0001 0.2926 24 7 6.0704 5.7507 -0.5358 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9557 0.7810 -0.8908 29 1 3.9564 0.7807 0.8892 30 1 2.8530 1.3508 -3.3105 31 1 3.8639 4.4720 1.0820 32 1 3.3449 3.0184 1.9683 33 1 4.8882 1.7598 3.2281 34 1 7.1521 1.5071 4.1549 35 1 8.6003 4.5141 1.4960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177621366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -54.617104 kcal Electronic energy + Delta-G solvation = -23240.941824 eV Core-core repulsion = 19540.698178 eV Total energy + Delta-G solvation = -3700.243647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.79600 -40.91953 -40.41377 -37.72016 -37.39790 -36.46409 -33.87684 -32.38238 -31.82598 -29.77517 -27.66244 -27.44673 -25.05438 -24.11232 -22.49225 -21.54930 -20.02803 -18.94308 -18.13361 -17.58521 -17.37137 -17.06257 -16.95409 -16.65175 -16.49497 -16.25553 -15.69486 -15.21682 -14.80052 -14.76150 -14.55632 -14.18251 -14.07165 -13.93800 -13.75961 -13.37682 -13.11883 -12.87261 -12.77397 -12.65233 -12.63398 -12.35003 -12.09848 -11.99805 -11.67180 -11.39290 -11.13870 -10.51468 -9.99377 -9.55965 -9.09480 -8.03297 -5.26866 -0.22316 0.22920 1.36209 1.39285 1.45621 1.74354 1.95135 1.98563 2.30151 2.49729 2.77056 2.92659 3.16626 3.45075 3.61489 3.87913 3.91532 4.07404 4.29602 4.41388 4.48222 4.52899 4.60562 4.66999 4.73430 4.87254 4.99863 5.06860 5.11094 5.22883 5.28677 5.51985 5.68417 5.88559 5.93169 6.16063 6.56932 6.98739 7.45366 7.74064 8.07881 9.05326 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.006462 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.406741 B = 4331.704788 C = 5702.741197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.382 6.382 3 C 0.464 3.536 4 O -0.549 6.549 5 C 0.182 3.818 6 N -0.570 5.570 7 C -0.263 4.263 8 H 0.090 0.910 9 C -0.038 4.038 10 N -0.917 5.917 11 Si 0.935 3.065 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.297 1.297 15 C 0.174 3.826 16 C -0.054 4.054 17 C -0.077 4.077 18 C -0.104 4.104 19 C 0.086 3.914 20 F -0.139 7.139 21 C -0.106 4.106 22 C -0.004 4.004 23 C 0.279 3.721 24 N -0.461 5.461 25 H 0.031 0.969 26 H 0.126 0.874 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.250 0.750 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -5.523 15.194 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.298 6.298 3 C 0.306 3.694 4 O -0.438 6.438 5 C 0.053 3.947 6 N -0.289 5.289 7 C -0.392 4.392 8 H 0.108 0.892 9 C -0.233 4.233 10 N -0.564 5.564 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.224 1.224 15 C 0.048 3.952 16 C -0.059 4.059 17 C -0.095 4.095 18 C -0.123 4.123 19 C 0.066 3.934 20 F -0.118 7.118 21 C -0.128 4.128 22 C -0.008 4.008 23 C -0.034 4.034 24 N -0.137 5.137 25 H 0.050 0.950 26 H 0.144 0.856 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.339 -4.124 13.767 15.331 hybrid contribution 0.036 0.437 -1.419 1.485 sum 5.376 -3.687 12.347 13.963 Atomic orbital electron populations 1.23183 0.77504 1.04247 1.00760 1.86515 1.23189 1.35190 1.84952 1.25959 0.94240 0.80187 0.69022 1.90467 1.67783 1.37928 1.47594 1.20646 0.84486 0.86242 1.03311 1.44169 1.74649 1.08051 1.02003 1.19922 1.32733 1.02540 0.84047 0.89231 1.25138 0.98383 1.00575 0.99251 1.70102 1.27790 1.32742 1.25774 0.85817 0.80178 0.76694 0.80820 1.20377 1.21509 1.22364 1.19908 0.91587 0.96101 0.87579 1.20931 0.96105 0.94319 0.94557 1.21110 0.97748 0.96401 0.94233 1.21648 0.90974 0.98878 1.00814 1.17408 0.80669 0.99082 0.96206 1.91512 1.39633 1.94999 1.85608 1.21078 0.95872 0.99319 0.96485 1.15688 0.94787 0.96275 0.94030 1.25751 0.92399 0.92489 0.92809 1.81076 1.08371 1.13410 1.10862 0.94987 0.85559 0.92538 0.88242 0.88001 0.94006 0.94261 0.90216 0.81341 0.80698 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.56 113.37 1.20 2.38 16 2 O -0.38 -15.14 10.57 -51.45 -0.54 -15.68 16 3 C 0.46 21.07 6.38 71.23 0.45 21.52 16 4 O -0.55 -28.93 16.13 21.94 0.35 -28.58 16 5 C 0.18 7.68 5.50 85.63 0.47 8.15 16 6 N -0.57 -25.67 2.01 -710.70 -1.43 -27.10 16 7 C -0.26 -13.91 9.01 84.04 0.76 -13.15 16 8 H 0.09 4.81 4.33 -2.91 -0.01 4.80 16 9 C -0.04 -2.09 4.82 84.86 0.41 -1.68 16 10 N -0.92 -52.00 9.60 21.65 0.21 -51.79 16 11 Si 0.93 46.57 29.63 68.60 2.03 48.60 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 15 C 0.17 6.27 5.39 85.64 0.46 6.73 16 16 C -0.05 -1.50 5.50 -19.59 -0.11 -1.61 16 17 C -0.08 -1.45 9.65 22.22 0.21 -1.24 16 18 C -0.10 -1.66 10.02 22.37 0.22 -1.43 16 19 C 0.09 1.71 7.29 22.34 0.16 1.87 16 20 F -0.14 -2.79 17.26 44.97 0.78 -2.02 16 21 C -0.11 -2.49 9.74 22.59 0.22 -2.27 16 22 C 0.00 -0.11 5.73 -21.37 -0.12 -0.23 16 23 C 0.28 10.50 11.93 88.35 1.05 11.55 16 24 N -0.46 -19.96 16.87 18.98 0.32 -19.64 16 25 H 0.03 1.15 8.13 -2.39 -0.02 1.13 16 26 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 28 H 0.10 4.76 6.03 -2.39 -0.01 4.74 16 29 H 0.10 3.26 8.11 -2.39 -0.02 3.24 16 30 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.04 1.59 7.37 -2.39 -0.02 1.57 16 32 H 0.08 2.54 7.93 -2.39 -0.02 2.52 16 33 H 0.17 2.25 8.03 -2.91 -0.02 2.23 16 34 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -72.04 315.54 8.25 -63.79 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.14 Total: 1.81 kcal Atomic # 6 Polarization: 25.20 SS G_CDS: 5.39 Total: 30.59 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -0.90 Total: -98.52 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.19 Total: -44.26 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -72.04 8.25 -63.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177621366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.177 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds