Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35995 * 117.00244 * 2 1 4 4 C 1.38153 * 119.82658 * 0.53728 * 3 2 1 5 5 C 1.39335 * 119.44112 * 180.26229 * 4 3 2 6 6 C 1.47289 * 122.01356 * 179.14797 * 5 4 3 7 7 O 1.21914 * 120.95403 * 0.04701 * 6 5 4 8 8 N 1.34670 * 118.09986 * 180.02562 * 6 5 4 9 9 C 1.30414 * 121.77544 * 359.97438 * 8 6 5 10 10 N 1.34418 * 123.41787 * 0.02562 * 9 8 6 11 11 C 1.46506 * 119.75622 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47289 * 265.00502 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99408 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00022 * 17 15 13 19 19 H 1.48498 * 109.47118 * 209.99881 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00401 * 17 15 13 21 21 C 1.38209 * 120.48818 * 0.25707 * 10 9 8 22 22 C 1.38716 * 121.88394 * 179.69903 * 21 10 9 23 23 C 1.38111 * 119.73549 * 180.02562 * 22 21 10 24 24 F 1.35100 * 119.69959 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47551 * 299.99510 * 1 2 3 27 27 H 1.09001 * 109.47642 * 59.99973 * 1 2 3 28 28 H 1.08000 * 120.27488 * 359.43952 * 4 3 2 29 29 H 1.07995 * 118.29098 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.47060 * 25.00771 * 11 10 9 31 31 H 1.09004 * 109.47073 * 145.00260 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 34 34 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.13473 * 359.97438 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2905 2.3681 0.0112 5 6 1.9314 3.6053 0.0056 6 6 1.1816 4.8730 -0.0016 7 8 -0.0375 4.8805 -0.0020 8 7 1.8813 6.0237 -0.0073 9 6 3.1854 6.0346 -0.0060 10 7 3.9349 4.9188 0.0004 11 6 5.3962 5.0245 0.0008 12 6 5.9149 4.9284 -1.4354 13 6 7.4180 5.0365 -1.4349 14 1 7.9501 5.1617 -0.5034 15 6 8.1140 4.9756 -2.6235 16 7 7.4659 4.8236 -3.7578 17 14 9.9771 5.1103 -2.6230 18 1 10.5713 3.7556 -2.4927 19 1 10.4290 5.7288 -3.8952 20 1 10.4121 5.9535 -1.4806 21 6 3.3374 3.6726 0.0008 22 6 4.0827 2.5026 0.0012 23 6 3.4393 1.2806 0.0011 24 9 4.1659 0.1416 0.0020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2119 2.3135 0.0109 29 1 3.6893 6.9897 -0.0104 30 1 5.6911 5.9820 0.4303 31 1 5.8190 4.2142 0.5948 32 1 5.6200 3.9709 -1.8648 33 1 5.4921 5.7386 -2.0293 34 1 7.9555 4.7811 -4.5941 35 1 5.1618 2.5472 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185059612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = -65.005168 kcal Electronic energy + Delta-G solvation = -22891.257550 eV Core-core repulsion = 19190.563443 eV Total energy + Delta-G solvation = -3700.694107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.93049 -41.48207 -39.55363 -38.05096 -36.60712 -34.67105 -33.04697 -30.89530 -30.52865 -29.54173 -27.65147 -25.45782 -24.22859 -24.02440 -22.40072 -21.05224 -19.38532 -19.06057 -17.73187 -16.95902 -16.60805 -16.38682 -16.33331 -15.58144 -15.42866 -15.14750 -15.07591 -14.68464 -14.63703 -14.04334 -13.72381 -13.52226 -13.15094 -12.86287 -12.47008 -12.29526 -12.02132 -11.66532 -11.50313 -11.29089 -11.18745 -11.02683 -10.82817 -10.45064 -10.11400 -9.57868 -9.42366 -9.06150 -8.97865 -8.64312 -7.73828 -6.28282 -4.35732 0.47082 0.79869 1.65382 2.54699 2.94880 2.97177 3.16680 3.24858 3.25637 3.93278 4.04193 4.10002 4.23199 4.35358 4.59098 4.68386 4.91902 4.98973 4.99705 5.08920 5.17157 5.27973 5.31858 5.45627 5.60385 5.72215 5.77339 5.79998 6.13638 6.23075 6.60665 6.68493 7.06434 7.24881 7.26565 7.65151 7.88406 7.97355 8.24777 8.69863 9.31806 10.82344 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.004822 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.309912 B = 5805.210680 C = 7095.518239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.061 3.939 4 C -0.097 4.097 5 C -0.189 4.189 6 C 0.537 3.463 7 O -0.503 6.503 8 N -0.614 5.614 9 C 0.435 3.565 10 N -0.501 5.501 11 C 0.087 3.913 12 C 0.007 3.993 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.181 3.819 22 C -0.151 4.151 23 C 0.136 3.864 24 F -0.121 7.121 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.154 0.846 29 H 0.204 0.796 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 -5.325 8.629 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.014 3.986 4 C -0.117 4.117 5 C -0.198 4.198 6 C 0.325 3.675 7 O -0.379 6.379 8 N -0.356 5.356 9 C 0.148 3.852 10 N -0.197 5.197 11 C -0.033 4.033 12 C -0.030 4.030 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.524 5.524 17 Si 0.725 3.275 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.079 3.921 22 C -0.173 4.173 23 C 0.115 3.885 24 F -0.099 7.099 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.171 0.829 29 H 0.221 0.779 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.777 -5.017 8.437 13.168 hybrid contribution 1.518 -0.778 -0.292 1.731 sum -7.259 -5.795 8.145 12.354 Atomic orbital electron populations 1.23141 0.77816 1.04234 1.01842 1.86125 1.21754 1.25166 1.89194 1.18826 0.90538 0.85738 1.03525 1.20921 1.00850 0.89380 1.00529 1.20868 0.92062 0.97593 1.09286 1.18963 0.88741 0.84033 0.75774 1.90733 1.13066 1.88320 1.45789 1.69341 1.05240 1.29945 1.31033 1.24798 0.88132 0.91082 0.81195 1.45225 1.10716 1.03694 1.60104 1.22800 0.72579 1.04056 1.03883 1.19531 0.96738 0.98874 0.87903 1.20926 0.90554 1.52435 0.93387 0.92023 1.24992 0.98934 0.94527 0.95450 1.69952 1.36043 1.48379 0.97988 0.86506 0.84873 0.78440 0.77712 1.20447 1.21053 1.19647 1.17609 0.90666 0.85742 0.98064 1.20643 1.02082 0.88422 1.06129 1.16770 0.85735 0.82429 1.03527 1.91544 1.76987 1.47855 1.93514 0.87866 0.92312 0.92233 0.82878 0.77939 0.88611 0.89451 0.95514 0.95484 0.92500 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.04 10.35 -19.72 -0.20 -4.25 16 3 C 0.06 0.87 6.69 -39.16 -0.26 0.61 16 4 C -0.10 -1.40 8.65 -39.20 -0.34 -1.74 16 5 C -0.19 -3.09 5.89 -104.86 -0.62 -3.71 16 6 C 0.54 9.94 7.97 -12.63 -0.10 9.83 16 7 O -0.50 -10.46 17.48 5.00 0.09 -10.37 16 8 N -0.61 -10.47 10.42 -14.52 -0.15 -10.62 16 9 C 0.44 5.99 11.37 -91.01 -1.03 4.96 16 10 N -0.50 -7.29 2.65 -116.09 -0.31 -7.59 16 11 C 0.09 1.29 4.94 -4.04 -0.02 1.27 16 12 C 0.01 0.15 5.24 -27.89 -0.15 0.01 16 13 C -0.53 -12.68 9.11 -34.44 -0.31 -13.00 16 14 H 0.06 1.38 7.74 -52.48 -0.41 0.97 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -24.24 13.29 55.43 0.74 -23.51 16 17 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 C 0.18 2.82 6.50 -83.86 -0.54 2.28 16 22 C -0.15 -2.26 8.87 -39.45 -0.35 -2.61 16 23 C 0.14 2.05 7.30 -39.17 -0.29 1.76 16 24 F -0.12 -1.86 17.09 2.25 0.04 -1.83 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 27 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 28 H 0.15 2.01 6.05 -52.49 -0.32 1.69 16 29 H 0.20 1.94 7.91 -52.49 -0.42 1.52 16 30 H 0.10 1.19 7.89 -51.93 -0.41 0.78 16 31 H 0.09 1.21 6.59 -51.93 -0.34 0.86 16 32 H 0.03 0.62 7.79 -51.93 -0.40 0.21 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.17 2.41 6.38 -52.49 -0.34 2.07 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -31.47 310.18 -6.67 -38.14 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.41 Total: -1.54 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.12 Total: 2.40 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.28 Total: -41.72 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.12 Total: -14.62 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.47 -6.67 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185059612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.866 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds