Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35995 * 117.00244 * 2 1 4 4 C 1.38153 * 119.82658 * 0.53728 * 3 2 1 5 5 C 1.39335 * 119.44112 * 180.26229 * 4 3 2 6 6 C 1.47289 * 122.01356 * 179.14797 * 5 4 3 7 7 O 1.21914 * 120.95403 * 0.04701 * 6 5 4 8 8 N 1.34670 * 118.09986 * 180.02562 * 6 5 4 9 9 C 1.30414 * 121.77544 * 359.97438 * 8 6 5 10 10 N 1.34418 * 123.41787 * 0.02562 * 9 8 6 11 11 C 1.46506 * 119.75622 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47289 * 265.00502 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99408 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00022 * 17 15 13 19 19 H 1.48498 * 109.47118 * 209.99881 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00401 * 17 15 13 21 21 C 1.38209 * 120.48818 * 0.25707 * 10 9 8 22 22 C 1.38716 * 121.88394 * 179.69903 * 21 10 9 23 23 C 1.38111 * 119.73549 * 180.02562 * 22 21 10 24 24 F 1.35100 * 119.69959 * 180.02562 * 23 22 21 25 25 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47551 * 299.99510 * 1 2 3 27 27 H 1.09001 * 109.47642 * 59.99973 * 1 2 3 28 28 H 1.08000 * 120.27488 * 359.43952 * 4 3 2 29 29 H 1.07995 * 118.29098 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.47060 * 25.00771 * 11 10 9 31 31 H 1.09004 * 109.47073 * 145.00260 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 34 34 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.13473 * 359.97438 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2905 2.3681 0.0112 5 6 1.9314 3.6053 0.0056 6 6 1.1816 4.8730 -0.0016 7 8 -0.0375 4.8805 -0.0020 8 7 1.8813 6.0237 -0.0073 9 6 3.1854 6.0346 -0.0060 10 7 3.9349 4.9188 0.0004 11 6 5.3962 5.0245 0.0008 12 6 5.9149 4.9284 -1.4354 13 6 7.4180 5.0365 -1.4349 14 1 7.9501 5.1617 -0.5034 15 6 8.1140 4.9756 -2.6235 16 7 7.4659 4.8236 -3.7578 17 14 9.9771 5.1103 -2.6230 18 1 10.5713 3.7556 -2.4927 19 1 10.4290 5.7288 -3.8952 20 1 10.4121 5.9535 -1.4806 21 6 3.3374 3.6726 0.0008 22 6 4.0827 2.5026 0.0012 23 6 3.4393 1.2806 0.0011 24 9 4.1659 0.1416 0.0020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2119 2.3135 0.0109 29 1 3.6893 6.9897 -0.0104 30 1 5.6911 5.9820 0.4303 31 1 5.8190 4.2142 0.5948 32 1 5.6200 3.9709 -1.8648 33 1 5.4921 5.7386 -2.0293 34 1 7.9555 4.7811 -4.5941 35 1 5.1618 2.5472 0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185059612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = -84.661797 kcal Electronic energy + Delta-G solvation = -22892.109925 eV Core-core repulsion = 19190.563443 eV Total energy + Delta-G solvation = -3701.546482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.14204 -42.69769 -40.61060 -39.41693 -37.73834 -36.13755 -34.72953 -32.10537 -31.91954 -30.86825 -28.53917 -27.05577 -25.39904 -25.24661 -23.86909 -22.39023 -20.55968 -20.21672 -19.03326 -18.47600 -17.90299 -17.55501 -17.46145 -16.87384 -16.77331 -16.38365 -16.25417 -16.22443 -15.82569 -15.17091 -14.97403 -14.81527 -14.50075 -14.21978 -14.00024 -13.47197 -13.24127 -12.92219 -12.85280 -12.58542 -12.52133 -12.36266 -12.28263 -11.94886 -11.75327 -11.35088 -10.69798 -10.55193 -10.37330 -10.18642 -8.95580 -8.19721 -6.30887 -0.75590 -0.37599 0.45014 1.35496 1.46676 1.49819 1.57719 1.75159 1.99389 2.44012 2.72786 2.79094 2.90799 3.17733 3.17836 3.41781 3.61681 3.83020 3.98550 4.13761 4.22579 4.31887 4.32181 4.42429 4.50627 4.57042 4.61353 4.72796 4.77209 5.06334 5.31576 5.38819 5.57791 5.62894 5.83998 6.04680 6.14687 6.56489 6.87170 6.99478 7.40736 8.91612 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.004822 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.309912 B = 5805.210680 C = 7095.518239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.069 3.931 4 C -0.095 4.095 5 C -0.201 4.201 6 C 0.528 3.472 7 O -0.542 6.542 8 N -0.639 5.639 9 C 0.445 3.555 10 N -0.497 5.497 11 C 0.101 3.899 12 C 0.011 3.989 13 C -0.533 4.533 14 H 0.080 0.920 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.279 1.279 19 H -0.293 1.293 20 H -0.255 1.255 21 C 0.172 3.828 22 C -0.149 4.149 23 C 0.128 3.872 24 F -0.124 7.124 25 H 0.131 0.869 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.165 0.835 29 H 0.249 0.751 30 H 0.133 0.867 31 H 0.103 0.897 32 H -0.004 1.004 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 -5.243 10.125 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.022 3.978 4 C -0.115 4.115 5 C -0.209 4.209 6 C 0.318 3.682 7 O -0.422 6.422 8 N -0.382 5.382 9 C 0.160 3.840 10 N -0.192 5.192 11 C -0.019 4.019 12 C -0.027 4.027 13 C -0.572 4.572 14 H 0.098 0.902 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.784 3.216 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.178 1.178 21 C 0.070 3.930 22 C -0.170 4.170 23 C 0.107 3.893 24 F -0.103 7.103 25 H 0.149 0.851 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.183 0.817 29 H 0.265 0.735 30 H 0.151 0.849 31 H 0.121 0.879 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.827 -4.939 9.962 13.598 hybrid contribution 1.205 -0.882 -0.757 1.675 sum -6.622 -5.821 9.205 12.746 Atomic orbital electron populations 1.23493 0.75542 1.06391 1.02553 1.86127 1.24080 1.24411 1.88793 1.18818 0.90371 0.86218 1.02418 1.21025 1.01477 0.88883 1.00140 1.20837 0.92361 0.97440 1.10294 1.19269 0.88584 0.85148 0.75238 1.90692 1.14436 1.88888 1.48138 1.69311 1.06719 1.29646 1.32568 1.25626 0.87332 0.92193 0.78846 1.45257 1.10708 1.03666 1.59592 1.22615 0.72370 1.06847 1.00021 1.19367 0.95642 0.96287 0.91386 1.21480 0.92163 1.49868 0.93651 0.90191 1.25851 1.03160 0.94827 0.95433 1.70095 1.37624 1.50922 0.98593 0.85540 0.79998 0.78366 0.77707 1.20479 1.21951 1.17842 1.17686 0.90489 0.86393 0.98448 1.20666 1.02232 0.88287 1.05836 1.16919 0.86200 0.82366 1.03787 1.91532 1.77114 1.48037 1.93570 0.85078 0.91294 0.91809 0.81750 0.73501 0.84893 0.87858 0.98576 0.97754 0.92993 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.97 10.35 -93.49 -0.97 -8.94 16 3 C 0.07 1.92 6.69 22.55 0.15 2.07 16 4 C -0.10 -2.72 8.65 22.51 0.19 -2.52 16 5 C -0.20 -6.49 5.89 -20.02 -0.12 -6.61 16 6 C 0.53 19.57 7.97 86.64 0.69 20.26 16 7 O -0.54 -22.95 17.48 -5.03 -0.09 -23.04 16 8 N -0.64 -21.27 10.42 -318.04 -3.31 -24.58 16 9 C 0.45 11.29 11.37 180.49 2.05 13.34 16 10 N -0.50 -13.45 2.65 -521.20 -1.38 -14.83 16 11 C 0.10 2.70 4.94 86.38 0.43 3.12 16 12 C 0.01 0.45 5.24 29.85 0.16 0.61 16 13 C -0.53 -24.37 9.11 25.60 0.23 -24.14 16 14 H 0.08 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -51.70 13.29 21.45 0.28 -51.41 16 17 Si 0.96 39.30 29.54 68.60 2.03 41.33 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 21 C 0.17 5.19 6.50 38.87 0.25 5.44 16 22 C -0.15 -4.32 8.87 22.35 0.20 -4.12 16 23 C 0.13 3.76 7.30 22.54 0.16 3.93 16 24 F -0.12 -3.75 17.09 44.97 0.77 -2.98 16 25 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 0.97 7.64 -2.39 -0.02 0.96 16 27 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 28 H 0.17 4.23 6.05 -2.91 -0.02 4.21 16 29 H 0.25 3.77 7.91 -2.91 -0.02 3.75 16 30 H 0.13 2.65 7.89 -2.39 -0.02 2.63 16 31 H 0.10 2.50 6.59 -2.38 -0.02 2.48 16 32 H 0.00 -0.20 7.79 -2.39 -0.02 -0.21 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.17 4.74 6.38 -2.91 -0.02 4.72 16 Total: -1.00 -69.18 310.18 4.45 -64.73 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.14 Total: 6.24 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.98 Total: 13.48 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -4.41 Total: -90.83 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.06 Total: -31.98 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.77 Total: -2.98 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.18 4.45 -64.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185059612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.927 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds