Wall clock time and date at job start Tue Mar 31 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42094 * 108.57859 * 2 1 4 4 O 1.42104 * 108.57717 * 228.97601 * 2 1 3 5 5 C 1.81404 * 101.92137 * 114.49107 * 2 1 3 6 6 C 1.52999 * 109.47034 * 185.21630 * 5 2 1 7 7 C 1.53002 * 112.84617 * 294.62590 * 6 5 2 8 8 S 1.81404 * 109.46877 * 302.86534 * 7 6 5 9 9 C 1.81406 * 102.99789 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47009 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47278 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00154 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99885 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00109 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47023 * 59.99977 * 15 13 11 17 17 H 1.48495 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47252 * 300.00400 * 15 13 11 19 19 C 1.53778 * 113.61592 * 163.42763 * 6 5 2 20 20 C 1.53956 * 87.02018 * 220.04408 * 19 6 5 21 21 C 1.53777 * 113.61814 * 65.81766 * 6 5 2 22 22 H 1.08999 * 109.47448 * 305.51056 * 1 2 3 23 23 H 1.09007 * 109.47145 * 65.51435 * 1 2 3 24 24 H 1.09005 * 109.47290 * 185.50886 * 1 2 3 25 25 H 1.09001 * 109.46511 * 305.20840 * 5 2 1 26 26 H 1.08993 * 109.47180 * 65.21438 * 5 2 1 27 27 H 1.08995 * 109.47610 * 62.86696 * 7 6 5 28 28 H 1.09003 * 109.47011 * 182.86803 * 7 6 5 29 29 H 1.08997 * 109.46854 * 299.99705 * 9 8 7 30 30 H 1.08995 * 109.47133 * 60.00004 * 9 8 7 31 31 H 1.08999 * 109.47285 * 299.99848 * 10 9 8 32 32 H 1.09003 * 109.47594 * 59.99737 * 10 9 8 33 33 H 0.97002 * 119.99912 * 180.02562 * 14 13 11 34 34 H 1.09000 * 113.61352 * 334.56863 * 19 6 5 35 35 H 1.09003 * 113.61129 * 105.46811 * 19 6 5 36 36 H 1.08994 * 113.53910 * 270.81099 * 20 19 6 37 37 H 1.09002 * 113.73757 * 139.94290 * 20 19 6 38 38 H 1.08997 * 113.61895 * 254.53384 * 21 6 5 39 39 H 1.09002 * 113.61338 * 25.35151 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.6996 -0.7003 1.8536 7 6 4.4766 -1.5805 0.8726 8 16 3.8711 -3.2871 0.9813 9 6 4.8962 -4.1618 -0.2331 10 6 4.5016 -5.6398 -0.2634 11 6 5.3527 -6.3663 -1.2727 12 1 6.1005 -5.8279 -1.8360 13 6 5.1773 -7.7187 -1.4763 14 7 4.2671 -8.3744 -0.7900 15 14 6.2328 -8.6195 -2.7269 16 1 7.6632 -8.4963 -2.3478 17 1 5.8506 -10.0542 -2.7554 18 1 6.0240 -8.0242 -4.0713 19 6 4.0966 -0.9170 3.3234 20 6 5.1640 0.1722 3.1119 21 6 4.2687 0.7219 1.9889 22 1 -0.3634 0.5969 0.8365 23 1 -0.3634 0.4260 -0.9353 24 1 -0.3634 -1.0229 0.0987 25 1 1.6840 -0.1697 2.3981 26 1 1.8422 -1.7690 1.6329 27 1 4.3335 -1.2081 -0.1417 28 1 5.5372 -1.5547 1.1229 29 1 4.7428 -3.7250 -1.2199 30 1 5.9461 -4.0713 0.0451 31 1 4.6546 -6.0769 0.7233 32 1 3.4516 -5.7300 -0.5418 33 1 4.1440 -9.3259 -0.9330 34 1 3.3183 -0.6339 4.0321 35 1 4.5127 -1.9046 3.5222 36 1 6.1187 -0.2169 2.7582 37 1 5.2709 0.8518 3.9574 38 1 4.8235 1.0555 1.1120 39 1 3.5372 1.4542 2.3308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190987393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:33 Heat of formation + Delta-G solvation = -64.461090 kcal Electronic energy + Delta-G solvation = -19606.221947 eV Core-core repulsion = 16574.915809 eV Total energy + Delta-G solvation = -3031.306138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71780 -36.98244 -36.01321 -33.62837 -31.23943 -30.80012 -29.86676 -27.93270 -25.84144 -25.15159 -22.91952 -21.07381 -18.95203 -18.54161 -16.79938 -16.50689 -16.45353 -16.18675 -15.44453 -15.10305 -15.00675 -14.46771 -13.96389 -13.91158 -13.45915 -13.39414 -13.21881 -12.75136 -12.47201 -12.29859 -12.11481 -11.96100 -11.93025 -11.66742 -11.42781 -11.13866 -11.09149 -10.96957 -10.78272 -10.61171 -10.38767 -10.14068 -9.98755 -9.58904 -9.39482 -9.01798 -8.37613 -7.04040 -6.02106 -4.05948 -0.10142 2.20198 2.65936 3.27165 3.33720 3.37830 3.41154 3.52637 3.91582 4.22653 4.34901 4.39568 4.45834 4.59114 4.63373 4.70967 4.79649 5.01306 5.28905 5.33601 5.42276 5.44112 5.55073 5.60998 5.65862 5.82861 5.83454 6.01987 6.07850 6.10240 6.27419 6.29851 6.81433 7.61207 7.71230 7.94777 8.32832 8.98726 9.57529 11.08803 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.003913 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.613360 B = 7154.604711 C = 7843.318828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.411 3.589 3 O -0.942 6.942 4 O -0.921 6.921 5 C -0.595 4.595 6 C -0.051 4.051 7 C -0.091 4.091 8 S -0.275 6.275 9 C -0.059 4.059 10 C 0.038 3.962 11 C -0.520 4.520 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.119 4.119 20 C -0.142 4.142 21 C -0.136 4.136 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.147 0.853 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 19.787 7.929 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.593 3.407 3 O -0.939 6.939 4 O -0.918 6.918 5 C -0.725 4.725 6 C -0.053 4.053 7 C -0.240 4.240 8 S -0.047 6.047 9 C -0.207 4.207 10 C 0.000 4.000 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.157 4.157 20 C -0.179 4.179 21 C -0.175 4.175 22 H 0.143 0.857 23 H 0.145 0.855 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.165 0.835 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.370 19.510 7.926 22.000 hybrid contribution 0.751 -0.434 -0.885 1.239 sum -5.619 19.076 7.041 21.096 Atomic orbital electron populations 1.30324 1.27645 1.11710 1.11339 1.08135 0.78163 0.76010 0.78353 1.93575 1.78901 1.34681 1.86761 1.93668 1.78127 1.66318 1.53667 1.30305 1.04589 1.15019 1.22540 1.21196 0.89538 0.96745 0.97786 1.23396 1.02555 0.96292 1.01721 1.86491 1.56587 1.03767 1.57847 1.23700 0.98625 1.01452 0.96932 1.18890 0.97659 0.85532 0.97935 1.21078 1.19529 0.93490 1.21887 0.92511 1.24996 0.95451 0.97538 0.96213 1.69961 1.33193 1.09014 1.40932 0.86588 0.80654 0.78574 0.81782 1.20193 1.21204 1.20131 1.23011 0.98559 1.00480 0.93676 1.22868 0.97926 0.98354 0.98753 1.23229 0.99819 0.94364 1.00073 0.85726 0.85458 0.85064 0.85145 0.83509 0.89113 0.89308 0.91013 0.91496 0.95641 0.95501 0.92799 0.89748 0.89778 0.89908 0.91128 0.90424 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.49 10.62 101.05 1.07 -3.41 16 2 S 2.41 25.44 5.04 -107.50 -0.54 24.89 16 3 O -0.94 -11.83 16.65 -57.83 -0.96 -12.79 16 4 O -0.92 -14.02 16.24 -57.83 -0.94 -14.96 16 5 C -0.60 -5.64 5.01 37.16 0.19 -5.45 16 6 C -0.05 -0.57 0.52 -153.70 -0.08 -0.65 16 7 C -0.09 -1.32 4.85 37.16 0.18 -1.14 16 8 S -0.28 -5.03 20.09 -107.50 -2.16 -7.19 16 9 C -0.06 -1.30 5.88 37.16 0.22 -1.08 16 10 C 0.04 1.02 4.98 -27.89 -0.14 0.88 16 11 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.12 -1.20 7.13 -25.83 -0.18 -1.38 16 20 C -0.14 -1.30 7.74 -25.83 -0.20 -1.50 16 21 C -0.14 -1.37 5.75 -25.92 -0.15 -1.51 16 22 H 0.12 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 24 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.13 0.74 8.07 -51.92 -0.42 0.32 16 26 H 0.15 1.48 6.92 -51.93 -0.36 1.12 16 27 H 0.09 1.39 6.29 -51.93 -0.33 1.06 16 28 H 0.09 1.20 7.31 -51.92 -0.38 0.82 16 29 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.08 0.97 7.97 -51.93 -0.41 0.56 16 36 H 0.08 0.78 7.60 -51.93 -0.39 0.38 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.09 0.83 8.02 -51.93 -0.42 0.42 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -34.90 338.72 -9.76 -44.65 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.47 Total: -1.43 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 0.50 Total: -28.79 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.90 Total: -27.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 20.40 SS G_CDS: -2.70 Total: 17.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.90 -9.76 -44.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190987393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.807 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds