Wall clock time and date at job start Tue Mar 31 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42094 * 108.57859 * 2 1 4 4 O 1.42104 * 108.57717 * 228.97601 * 2 1 3 5 5 C 1.81404 * 101.92137 * 114.49107 * 2 1 3 6 6 C 1.52999 * 109.47034 * 185.21630 * 5 2 1 7 7 C 1.53002 * 112.84617 * 294.62590 * 6 5 2 8 8 S 1.81404 * 109.46877 * 302.86534 * 7 6 5 9 9 C 1.81406 * 102.99789 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47009 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47278 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00154 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99885 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00109 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47023 * 59.99977 * 15 13 11 17 17 H 1.48495 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47252 * 300.00400 * 15 13 11 19 19 C 1.53778 * 113.61592 * 163.42763 * 6 5 2 20 20 C 1.53956 * 87.02018 * 220.04408 * 19 6 5 21 21 C 1.53777 * 113.61814 * 65.81766 * 6 5 2 22 22 H 1.08999 * 109.47448 * 305.51056 * 1 2 3 23 23 H 1.09007 * 109.47145 * 65.51435 * 1 2 3 24 24 H 1.09005 * 109.47290 * 185.50886 * 1 2 3 25 25 H 1.09001 * 109.46511 * 305.20840 * 5 2 1 26 26 H 1.08993 * 109.47180 * 65.21438 * 5 2 1 27 27 H 1.08995 * 109.47610 * 62.86696 * 7 6 5 28 28 H 1.09003 * 109.47011 * 182.86803 * 7 6 5 29 29 H 1.08997 * 109.46854 * 299.99705 * 9 8 7 30 30 H 1.08995 * 109.47133 * 60.00004 * 9 8 7 31 31 H 1.08999 * 109.47285 * 299.99848 * 10 9 8 32 32 H 1.09003 * 109.47594 * 59.99737 * 10 9 8 33 33 H 0.97002 * 119.99912 * 180.02562 * 14 13 11 34 34 H 1.09000 * 113.61352 * 334.56863 * 19 6 5 35 35 H 1.09003 * 113.61129 * 105.46811 * 19 6 5 36 36 H 1.08994 * 113.53910 * 270.81099 * 20 19 6 37 37 H 1.09002 * 113.73757 * 139.94290 * 20 19 6 38 38 H 1.08997 * 113.61895 * 254.53384 * 21 6 5 39 39 H 1.09002 * 113.61338 * 25.35151 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.6996 -0.7003 1.8536 7 6 4.4766 -1.5805 0.8726 8 16 3.8711 -3.2871 0.9813 9 6 4.8962 -4.1618 -0.2331 10 6 4.5016 -5.6398 -0.2634 11 6 5.3527 -6.3663 -1.2727 12 1 6.1005 -5.8279 -1.8360 13 6 5.1773 -7.7187 -1.4763 14 7 4.2671 -8.3744 -0.7900 15 14 6.2328 -8.6195 -2.7269 16 1 7.6632 -8.4963 -2.3478 17 1 5.8506 -10.0542 -2.7554 18 1 6.0240 -8.0242 -4.0713 19 6 4.0966 -0.9170 3.3234 20 6 5.1640 0.1722 3.1119 21 6 4.2687 0.7219 1.9889 22 1 -0.3634 0.5969 0.8365 23 1 -0.3634 0.4260 -0.9353 24 1 -0.3634 -1.0229 0.0987 25 1 1.6840 -0.1697 2.3981 26 1 1.8422 -1.7690 1.6329 27 1 4.3335 -1.2081 -0.1417 28 1 5.5372 -1.5547 1.1229 29 1 4.7428 -3.7250 -1.2199 30 1 5.9461 -4.0713 0.0451 31 1 4.6546 -6.0769 0.7233 32 1 3.4516 -5.7300 -0.5418 33 1 4.1440 -9.3259 -0.9330 34 1 3.3183 -0.6339 4.0321 35 1 4.5127 -1.9046 3.5222 36 1 6.1187 -0.2169 2.7582 37 1 5.2709 0.8518 3.9574 38 1 4.8235 1.0555 1.1120 39 1 3.5372 1.4542 2.3308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190987393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:32 Heat of formation + Delta-G solvation = -87.674163 kcal Electronic energy + Delta-G solvation = -19607.228541 eV Core-core repulsion = 16574.915809 eV Total energy + Delta-G solvation = -3032.312732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55160 -37.89405 -36.92468 -35.77722 -32.90879 -32.05602 -30.50327 -28.95092 -27.26295 -26.60864 -23.81409 -23.02564 -19.77910 -19.43394 -18.67151 -17.66792 -17.39178 -17.02758 -16.63081 -16.49242 -16.14394 -15.92675 -15.56171 -15.11242 -14.53253 -14.33867 -13.99752 -13.90564 -13.69445 -13.49382 -13.25733 -13.07844 -12.94116 -12.90729 -12.84815 -12.73918 -12.39620 -12.15776 -11.98175 -11.87804 -11.74234 -11.50525 -11.45313 -11.05910 -10.87521 -10.65459 -10.60084 -8.54051 -8.23372 -6.36624 -0.86546 0.76455 1.40066 1.43582 1.51714 1.73937 1.93175 2.40379 2.75817 3.09603 3.16856 3.38284 3.48803 3.56644 3.84301 3.94933 4.08666 4.16095 4.24701 4.28011 4.37008 4.38981 4.54621 4.58265 4.83377 4.87263 4.89372 4.94670 4.98411 5.11564 5.20826 5.26673 5.36895 5.50237 5.52463 5.73178 6.11911 6.76320 7.32374 8.88268 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.003913 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.613360 B = 7154.604711 C = 7843.318828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.402 3.598 3 O -0.969 6.969 4 O -0.982 6.982 5 C -0.592 4.592 6 C -0.064 4.064 7 C -0.084 4.084 8 S -0.275 6.275 9 C -0.059 4.059 10 C 0.048 3.952 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.971 3.029 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.267 1.267 19 C -0.116 4.116 20 C -0.137 4.137 21 C -0.132 4.132 22 H 0.160 0.840 23 H 0.135 0.865 24 H 0.143 0.857 25 H 0.177 0.823 26 H 0.140 0.860 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.001 0.999 32 H -0.003 1.003 33 H 0.266 0.734 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 21.283 8.922 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.590 3.410 3 O -0.966 6.966 4 O -0.979 6.979 5 C -0.722 4.722 6 C -0.066 4.066 7 C -0.232 4.232 8 S -0.047 6.047 9 C -0.207 4.207 10 C 0.009 3.991 11 C -0.586 4.586 12 H 0.081 0.919 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.794 3.206 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.192 1.192 19 C -0.154 4.154 20 C -0.174 4.174 21 C -0.171 4.171 22 H 0.178 0.822 23 H 0.153 0.847 24 H 0.162 0.838 25 H 0.195 0.805 26 H 0.159 0.841 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.019 0.981 32 H 0.015 0.985 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.838 21.013 8.903 23.824 hybrid contribution 0.811 -0.808 -1.119 1.601 sum -6.028 20.205 7.784 22.476 Atomic orbital electron populations 1.30143 1.22484 1.13491 1.13467 1.07997 0.80087 0.74825 0.78103 1.93536 1.80623 1.35335 1.87107 1.93602 1.80525 1.67440 1.56310 1.30284 1.03690 1.15233 1.22990 1.21293 0.90461 0.97045 0.97787 1.23506 1.03566 0.93644 1.02503 1.86329 1.56082 1.06499 1.55765 1.23360 0.99838 0.99241 0.98240 1.18646 0.95709 0.88596 0.96118 1.21518 1.20083 0.94390 1.22577 0.91929 1.25983 0.96711 0.98445 0.98265 1.70095 1.34786 1.09496 1.42538 0.85421 0.78999 0.77172 0.78975 1.18961 1.20483 1.19238 1.23063 0.99514 0.99894 0.92979 1.22868 0.97271 0.98210 0.99078 1.23268 1.00251 0.93581 0.99994 0.82183 0.84666 0.83818 0.80521 0.84144 0.90252 0.88615 0.91677 0.90747 0.98075 0.98477 0.92495 0.87149 0.91630 0.90636 0.89002 0.91616 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.76 10.62 113.37 1.20 -5.56 16 2 S 2.40 48.23 5.04 -56.49 -0.28 47.94 16 3 O -0.97 -23.32 16.65 -127.37 -2.12 -25.44 16 4 O -0.98 -30.88 16.24 -127.37 -2.07 -32.94 16 5 C -0.59 -9.86 5.01 71.98 0.36 -9.50 16 6 C -0.06 -1.35 0.52 -51.66 -0.03 -1.37 16 7 C -0.08 -2.44 4.85 71.98 0.35 -2.09 16 8 S -0.28 -10.29 20.09 -56.49 -1.14 -11.42 16 9 C -0.06 -2.67 5.88 71.98 0.42 -2.25 16 10 C 0.05 2.66 4.98 29.85 0.15 2.80 16 11 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 12 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 13 C 0.00 0.27 5.46 84.66 0.46 0.73 16 14 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 15 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 C -0.12 -2.07 7.13 31.18 0.22 -1.84 16 20 C -0.14 -2.19 7.74 31.18 0.24 -1.95 16 21 C -0.13 -2.37 5.75 31.12 0.18 -2.19 16 22 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.18 1.21 8.07 -2.39 -0.02 1.19 16 26 H 0.14 2.60 6.92 -2.39 -0.02 2.58 16 27 H 0.08 2.52 6.29 -2.39 -0.02 2.51 16 28 H 0.10 2.60 7.31 -2.39 -0.02 2.58 16 29 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.11 1.40 8.05 -2.39 -0.02 1.38 16 35 H 0.06 1.43 7.97 -2.39 -0.02 1.41 16 36 H 0.07 1.31 7.60 -2.39 -0.02 1.29 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.11 1.63 8.02 -2.39 -0.02 1.61 16 Total: -1.00 -78.58 338.72 1.51 -77.07 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.01 Total: 10.11 kcal Atomic # 6 Polarization: -58.83 SS G_CDS: 3.80 Total: -55.04 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -4.19 Total: -58.38 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 37.94 SS G_CDS: -1.42 Total: 36.52 kcal Total: -78.58 1.51 -77.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190987393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.604 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds