Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37098 * 120.00161 * 2 1 4 4 H 1.07998 * 119.99639 * 201.81323 * 3 2 1 5 5 C 1.38944 * 120.00049 * 21.80564 * 3 2 1 6 6 N 1.31408 * 120.00063 * 14.94270 * 5 3 2 7 7 Si 1.86799 * 120.00138 * 194.93666 * 5 3 2 8 8 H 1.48500 * 109.46929 * 60.00535 * 7 5 3 9 9 H 1.48506 * 109.46987 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47207 * 300.00510 * 7 5 3 11 11 C 1.34784 * 120.00052 * 180.02562 * 2 1 3 12 12 O 1.21284 * 120.00232 * 179.97438 * 11 2 1 13 13 C 1.50707 * 119.99628 * 359.97438 * 11 2 1 14 14 H 1.08993 * 110.85840 * 58.79922 * 13 11 2 15 15 C 1.54736 * 110.97224 * 294.99946 * 13 11 2 16 16 C 1.51681 * 102.55117 * 217.62857 * 15 13 11 17 17 C 1.47651 * 125.86880 * 195.39734 * 16 15 13 18 18 C 1.39636 * 120.13862 * 180.02562 * 17 16 15 19 19 C 1.37937 * 119.89924 * 179.97438 * 18 17 16 20 20 C 1.38341 * 120.18021 * 0.25286 * 19 18 17 21 21 C 1.38555 * 120.27252 * 359.48561 * 20 19 18 22 22 F 1.35102 * 119.95162 * 180.27898 * 21 20 19 23 23 C 1.38212 * 120.09916 * 0.51634 * 21 20 19 24 24 N 1.29086 * 108.26906 * 15.65659 * 16 15 13 25 25 O 1.41385 * 112.87222 * 359.88232 * 24 16 15 26 26 H 1.08999 * 109.46849 * 270.18919 * 1 2 3 27 27 H 1.09003 * 109.47073 * 30.18374 * 1 2 3 28 28 H 1.08994 * 109.47333 * 150.18807 * 1 2 3 29 29 H 0.97004 * 120.00470 * 179.97438 * 6 5 3 30 30 H 1.09001 * 110.79093 * 99.35983 * 15 13 11 31 31 H 1.09006 * 110.79559 * 335.89859 * 15 13 11 32 32 H 1.08003 * 120.05026 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.90907 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.86537 * 179.74372 * 20 19 18 35 35 H 1.07991 * 120.08916 * 179.72053 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1725 1.2207 -0.3475 5 6 1.5304 2.3476 0.4470 6 7 0.4134 2.2723 1.1350 7 14 2.2846 4.0144 0.0700 8 1 2.3705 4.1975 -1.4012 9 1 1.4369 5.0848 0.6539 10 1 3.6464 4.0860 0.6580 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4724 -0.0005 14 1 0.7340 -2.5444 -0.8715 15 6 0.5801 -2.6469 1.3092 16 6 0.7241 -4.1307 1.5894 17 6 -0.0958 -4.9165 2.5330 18 6 0.1416 -6.2825 2.6987 19 6 -0.6270 -7.0118 3.5820 20 6 -1.6357 -6.3946 4.3000 21 6 -1.8740 -5.0385 4.1452 22 9 -2.8571 -4.4413 4.8538 23 6 -1.1108 -4.2968 3.2633 24 7 1.6903 -4.5873 0.8654 25 8 2.2915 -3.5925 0.0605 26 1 -0.3633 0.0034 1.0277 27 1 -0.3633 0.8884 -0.5167 28 1 -0.3634 -0.8916 -0.5109 29 1 -0.0194 3.0823 1.4474 30 1 -0.4662 -2.3814 1.1585 31 1 1.0180 -2.0567 2.1143 32 1 0.9259 -6.7673 2.1363 33 1 -0.4438 -8.0684 3.7100 34 1 -2.2371 -6.9713 4.9870 35 1 -1.2997 -3.2408 3.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195119660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -17.509592 kcal Electronic energy + Delta-G solvation = -22577.819207 eV Core-core repulsion = 18879.184663 eV Total energy + Delta-G solvation = -3698.634544 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.11420 -40.37857 -39.05009 -37.87461 -34.84161 -33.55298 -32.03079 -31.17632 -30.34460 -30.07029 -26.41729 -25.28130 -24.01998 -23.55770 -22.44112 -20.30394 -19.30394 -17.58804 -17.06968 -16.74756 -16.53207 -16.43123 -15.82381 -15.77252 -15.18448 -14.89980 -14.52321 -14.18678 -13.91896 -13.65542 -13.43910 -13.11087 -12.95050 -12.59770 -12.14227 -12.06477 -11.99702 -11.64891 -11.52295 -11.38715 -11.25532 -10.96760 -10.59834 -10.47048 -10.35034 -9.99798 -9.16626 -9.13124 -8.78109 -8.41792 -7.83408 -6.44963 -3.99226 0.38949 0.88615 2.08331 2.99489 3.12574 3.19701 3.24525 3.38340 3.60451 3.85717 4.03284 4.07898 4.32790 4.61875 4.65458 4.75282 4.83810 4.88204 4.99620 5.02140 5.24912 5.28812 5.53752 5.60300 5.68388 5.74011 5.85380 5.92051 6.05414 6.08524 6.14777 6.51843 6.67360 7.01442 7.41087 7.46757 7.97886 8.34889 9.04709 9.25149 9.79999 10.59478 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.003947 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.343515 B = 7093.044991 C = 8189.013962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.436 5.436 3 C -0.310 4.310 4 H 0.101 0.899 5 C 0.034 3.966 6 N -0.879 5.879 7 Si 0.929 3.071 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.447 3.553 12 O -0.565 6.565 13 C 0.038 3.962 14 H 0.098 0.902 15 C -0.135 4.135 16 C 0.110 3.890 17 C -0.001 4.001 18 C -0.094 4.094 19 C -0.093 4.093 20 C -0.141 4.141 21 C 0.099 3.901 22 F -0.136 7.136 23 C -0.123 4.123 24 N -0.280 5.280 25 O -0.158 6.158 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.270 0.730 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 -14.037 5.150 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.156 5.156 3 C -0.437 4.437 4 H 0.119 0.881 5 C -0.170 4.170 6 N -0.518 5.518 7 Si 0.755 3.245 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.232 3.768 12 O -0.448 6.448 13 C -0.024 4.024 14 H 0.116 0.884 15 C -0.174 4.174 16 C -0.079 4.079 17 C -0.002 4.002 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.160 4.160 21 C 0.079 3.921 22 F -0.114 7.114 23 C -0.144 4.144 24 N -0.018 5.018 25 O -0.179 6.179 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.370 -14.707 4.839 17.600 hybrid contribution -0.607 1.845 0.178 1.950 sum -8.976 -12.862 5.016 16.468 Atomic orbital electron populations 1.21640 0.81105 0.99452 1.01601 1.43498 1.05479 1.04275 1.62321 1.19651 0.99523 0.83173 1.41366 0.88108 1.25330 0.96544 1.00143 0.94960 1.69978 1.18749 1.29696 1.33333 0.85956 0.79069 0.80528 0.78962 1.19774 1.20842 1.19651 1.19396 0.88010 0.83695 0.85695 1.90575 1.13336 1.86245 1.54659 1.23513 0.91617 0.89561 0.97748 0.88405 1.23012 1.03633 0.92055 0.98718 1.24121 0.94918 0.94451 0.94459 1.17557 0.94672 0.92556 0.95404 1.21456 0.99474 0.92611 0.97819 1.20967 0.94359 1.00494 0.95302 1.21319 0.99917 0.93044 1.01752 1.17462 0.88965 0.91362 0.94274 1.91533 1.59446 1.83928 1.76523 1.21271 0.95396 1.01421 0.96278 1.78285 1.06625 1.13705 1.03180 1.91344 1.38505 1.23224 1.64820 0.92127 0.90684 0.95590 0.91980 0.87314 0.87066 0.84183 0.84324 0.84382 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.18 7.37 59.85 0.44 2.62 16 2 N -0.44 -10.82 3.02 -122.19 -0.37 -11.19 16 3 C -0.31 -8.44 9.28 -14.93 -0.14 -8.58 16 4 H 0.10 2.90 7.41 -52.49 -0.39 2.51 16 5 C 0.03 0.87 5.03 -17.47 -0.09 0.78 16 6 N -0.88 -22.33 10.78 55.50 0.60 -21.73 16 7 Si 0.93 20.19 29.58 -169.99 -5.03 15.17 16 8 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 11 C 0.45 11.05 7.01 -10.98 -0.08 10.97 16 12 O -0.57 -16.47 16.27 -13.27 -0.22 -16.68 16 13 C 0.04 0.74 3.24 -26.97 -0.09 0.65 16 14 H 0.10 1.68 7.38 -51.93 -0.38 1.29 16 15 C -0.13 -2.15 4.66 -26.49 -0.12 -2.27 16 16 C 0.11 1.66 7.16 -79.42 -0.57 1.09 16 17 C 0.00 -0.01 5.87 -105.04 -0.62 -0.62 16 18 C -0.09 -0.95 9.68 -39.17 -0.38 -1.33 16 19 C -0.09 -0.73 10.03 -39.65 -0.40 -1.13 16 20 C -0.14 -1.15 10.02 -39.43 -0.39 -1.55 16 21 C 0.10 1.01 7.29 -39.47 -0.29 0.72 16 22 F -0.14 -1.49 17.26 2.25 0.04 -1.46 16 23 C -0.12 -1.34 9.59 -39.10 -0.37 -1.71 16 24 N -0.28 -4.98 12.12 35.30 0.43 -4.55 16 25 O -0.16 -3.37 11.82 -30.19 -0.36 -3.73 16 26 H 0.06 1.25 7.57 -51.93 -0.39 0.86 16 27 H 0.07 1.65 6.98 -51.93 -0.36 1.28 16 28 H 0.03 0.43 6.05 -51.93 -0.31 0.12 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.11 1.40 7.25 -51.93 -0.38 1.02 16 31 H 0.11 1.94 7.90 -51.93 -0.41 1.53 16 32 H 0.14 1.39 7.84 -52.48 -0.41 0.98 16 33 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.15 1.48 7.37 -52.49 -0.39 1.10 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -32.21 308.57 -6.75 -38.96 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.41 Total: 0.92 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.09 Total: -0.37 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.66 Total: -37.47 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.57 Total: -20.41 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.21 -6.75 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195119660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.455 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds