Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37098 * 120.00161 * 2 1 4 4 H 1.07998 * 119.99639 * 201.81323 * 3 2 1 5 5 C 1.38944 * 120.00049 * 21.80564 * 3 2 1 6 6 N 1.31408 * 120.00063 * 14.94270 * 5 3 2 7 7 Si 1.86799 * 120.00138 * 194.93666 * 5 3 2 8 8 H 1.48500 * 109.46929 * 60.00535 * 7 5 3 9 9 H 1.48506 * 109.46987 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47207 * 300.00510 * 7 5 3 11 11 C 1.34784 * 120.00052 * 180.02562 * 2 1 3 12 12 O 1.21284 * 120.00232 * 179.97438 * 11 2 1 13 13 C 1.50707 * 119.99628 * 359.97438 * 11 2 1 14 14 H 1.08993 * 110.85840 * 58.79922 * 13 11 2 15 15 C 1.54736 * 110.97224 * 294.99946 * 13 11 2 16 16 C 1.51681 * 102.55117 * 217.62857 * 15 13 11 17 17 C 1.47651 * 125.86880 * 195.39734 * 16 15 13 18 18 C 1.39636 * 120.13862 * 180.02562 * 17 16 15 19 19 C 1.37937 * 119.89924 * 179.97438 * 18 17 16 20 20 C 1.38341 * 120.18021 * 0.25286 * 19 18 17 21 21 C 1.38555 * 120.27252 * 359.48561 * 20 19 18 22 22 F 1.35102 * 119.95162 * 180.27898 * 21 20 19 23 23 C 1.38212 * 120.09916 * 0.51634 * 21 20 19 24 24 N 1.29086 * 108.26906 * 15.65659 * 16 15 13 25 25 O 1.41385 * 112.87222 * 359.88232 * 24 16 15 26 26 H 1.08999 * 109.46849 * 270.18919 * 1 2 3 27 27 H 1.09003 * 109.47073 * 30.18374 * 1 2 3 28 28 H 1.08994 * 109.47333 * 150.18807 * 1 2 3 29 29 H 0.97004 * 120.00470 * 179.97438 * 6 5 3 30 30 H 1.09001 * 110.79093 * 99.35983 * 15 13 11 31 31 H 1.09006 * 110.79559 * 335.89859 * 15 13 11 32 32 H 1.08003 * 120.05026 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.90907 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.86537 * 179.74372 * 20 19 18 35 35 H 1.07991 * 120.08916 * 179.72053 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1725 1.2207 -0.3475 5 6 1.5304 2.3476 0.4470 6 7 0.4134 2.2723 1.1350 7 14 2.2846 4.0144 0.0700 8 1 2.3705 4.1975 -1.4012 9 1 1.4369 5.0848 0.6539 10 1 3.6464 4.0860 0.6580 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4724 -0.0005 14 1 0.7340 -2.5444 -0.8715 15 6 0.5801 -2.6469 1.3092 16 6 0.7241 -4.1307 1.5894 17 6 -0.0958 -4.9165 2.5330 18 6 0.1416 -6.2825 2.6987 19 6 -0.6270 -7.0118 3.5820 20 6 -1.6357 -6.3946 4.3000 21 6 -1.8740 -5.0385 4.1452 22 9 -2.8571 -4.4413 4.8538 23 6 -1.1108 -4.2968 3.2633 24 7 1.6903 -4.5873 0.8654 25 8 2.2915 -3.5925 0.0605 26 1 -0.3633 0.0034 1.0277 27 1 -0.3633 0.8884 -0.5167 28 1 -0.3634 -0.8916 -0.5109 29 1 -0.0194 3.0823 1.4474 30 1 -0.4662 -2.3814 1.1585 31 1 1.0180 -2.0567 2.1143 32 1 0.9259 -6.7673 2.1363 33 1 -0.4438 -8.0684 3.7100 34 1 -2.2371 -6.9713 4.9870 35 1 -1.2997 -3.2408 3.1395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195119660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -37.019318 kcal Electronic energy + Delta-G solvation = -22578.665212 eV Core-core repulsion = 18879.184663 eV Total energy + Delta-G solvation = -3699.480549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.90426 -41.77467 -40.17649 -39.42327 -36.80767 -34.76256 -33.94061 -32.20780 -31.63786 -31.03280 -28.23586 -27.02480 -25.15899 -24.83738 -23.36533 -21.54866 -20.83603 -19.02858 -18.75645 -18.23995 -17.48006 -17.21639 -17.05168 -16.92772 -16.60675 -16.37523 -16.09311 -15.67633 -15.31839 -14.83009 -14.49395 -14.34858 -14.14949 -14.01832 -13.76670 -13.41401 -13.26918 -13.17685 -12.88612 -12.81248 -12.67283 -12.44945 -12.31354 -12.14678 -11.80815 -11.25685 -11.07412 -10.42151 -9.95772 -9.80258 -9.66444 -8.42339 -6.05875 -0.51240 0.14444 1.03915 1.34367 1.40179 1.48816 1.63977 1.79610 2.25864 2.59189 2.68129 2.91060 2.99480 3.15627 3.35206 3.44116 3.74129 3.84738 3.92385 3.95634 4.06656 4.27679 4.30886 4.45183 4.50129 4.59739 4.83289 4.96489 5.00212 5.05894 5.23365 5.29801 5.31794 5.39610 5.79451 5.95713 6.11429 6.39165 7.05972 7.30004 7.86081 8.59811 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.003947 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.343515 B = 7093.044991 C = 8189.013962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.442 5.442 3 C -0.354 4.354 4 H 0.070 0.930 5 C 0.009 3.991 6 N -0.884 5.884 7 Si 0.988 3.012 8 H -0.267 1.267 9 H -0.265 1.265 10 H -0.279 1.279 11 C 0.432 3.568 12 O -0.625 6.625 13 C 0.044 3.956 14 H 0.126 0.874 15 C -0.129 4.129 16 C 0.140 3.860 17 C -0.027 4.027 18 C -0.094 4.094 19 C -0.083 4.083 20 C -0.122 4.122 21 C 0.084 3.916 22 F -0.142 7.142 23 C -0.123 4.123 24 N -0.304 5.304 25 O -0.205 6.205 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.278 0.722 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 -15.210 6.407 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.161 5.161 3 C -0.481 4.481 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.521 5.521 7 Si 0.811 3.189 8 H -0.192 1.192 9 H -0.189 1.189 10 H -0.204 1.204 11 C 0.220 3.780 12 O -0.513 6.513 13 C -0.018 4.018 14 H 0.143 0.857 15 C -0.169 4.169 16 C -0.049 4.049 17 C -0.029 4.029 18 C -0.113 4.113 19 C -0.100 4.100 20 C -0.142 4.142 21 C 0.065 3.935 22 F -0.121 7.121 23 C -0.144 4.144 24 N -0.046 5.046 25 O -0.222 6.222 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.193 0.807 34 H 0.186 0.814 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.042 -15.862 6.083 20.262 hybrid contribution 0.090 2.134 -0.053 2.137 sum -10.952 -13.728 6.031 18.568 Atomic orbital electron populations 1.21705 0.78598 1.00885 1.02025 1.43725 1.07083 1.03815 1.61449 1.19587 0.99265 0.85251 1.44041 0.91233 1.26011 0.96869 1.02573 0.93999 1.70017 1.18835 1.30945 1.32306 0.85080 0.78064 0.76727 0.78989 1.19211 1.18937 1.20445 1.20279 0.87759 0.85423 0.84534 1.90516 1.16084 1.87454 1.57219 1.23401 0.91273 0.86580 1.00568 0.85672 1.23010 1.04917 0.92608 0.96345 1.24507 0.93315 0.93953 0.93111 1.17519 0.95668 0.93269 0.96408 1.21626 0.99674 0.91957 0.98092 1.21332 0.93059 1.01975 0.93646 1.21718 0.99286 0.92225 1.00930 1.17634 0.89091 0.92255 0.94522 1.91522 1.59696 1.84210 1.76654 1.21301 0.95111 1.01766 0.96212 1.78330 1.08622 1.12448 1.05214 1.91313 1.40441 1.24189 1.66290 0.92037 0.92078 0.91280 0.91201 0.83599 0.88729 0.84237 0.80725 0.81411 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.47 7.37 127.77 0.94 5.41 16 2 N -0.44 -22.51 3.02 -658.89 -1.99 -24.50 16 3 C -0.35 -20.01 9.28 84.04 0.78 -19.23 16 4 H 0.07 4.28 7.41 -2.91 -0.02 4.25 16 5 C 0.01 0.47 5.03 84.93 0.43 0.90 16 6 N -0.88 -44.28 10.78 21.66 0.23 -44.05 16 7 Si 0.99 41.38 29.58 68.60 2.03 43.41 16 8 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 9 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 C 0.43 22.28 7.01 87.66 0.61 22.89 16 12 O -0.63 -38.80 16.27 14.96 0.24 -38.55 16 13 C 0.04 1.72 3.24 30.44 0.10 1.82 16 14 H 0.13 4.16 7.38 -2.39 -0.02 4.14 16 15 C -0.13 -4.04 4.66 30.75 0.14 -3.90 16 16 C 0.14 4.11 7.16 45.76 0.33 4.44 16 17 C -0.03 -0.61 5.87 -20.13 -0.12 -0.72 16 18 C -0.09 -1.67 9.68 22.54 0.22 -1.45 16 19 C -0.08 -0.95 10.03 22.22 0.22 -0.73 16 20 C -0.12 -1.49 10.02 22.37 0.22 -1.26 16 21 C 0.08 1.47 7.29 22.34 0.16 1.63 16 22 F -0.14 -2.78 17.26 44.97 0.78 -2.00 16 23 C -0.12 -2.42 9.59 22.58 0.22 -2.20 16 24 N -0.30 -10.89 12.12 -42.23 -0.51 -11.41 16 25 O -0.21 -9.07 11.82 -20.30 -0.24 -9.31 16 26 H 0.06 2.47 7.57 -2.39 -0.02 2.45 16 27 H 0.06 2.63 6.98 -2.39 -0.02 2.62 16 28 H 0.07 2.16 6.05 -2.39 -0.01 2.15 16 29 H 0.28 13.00 8.31 -92.70 -0.77 12.23 16 30 H 0.15 3.39 7.25 -2.39 -0.02 3.37 16 31 H 0.09 3.34 7.90 -2.38 -0.02 3.32 16 32 H 0.14 2.51 7.84 -2.91 -0.02 2.49 16 33 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 34 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.15 2.74 7.37 -2.92 -0.02 2.71 16 Total: -1.00 -74.27 308.57 5.94 -68.33 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.13 Total: 10.48 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 4.26 Total: 7.60 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.27 Total: -79.95 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: 0.00 Total: -47.87 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -74.27 5.94 -68.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195119660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.314 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds