Wall clock time and date at job start Tue Mar 31 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48495 * 109.46931 * 270.00289 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46755 * 150.00275 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21595 * 120.00397 * 0.02562 * 13 12 11 15 15 C 1.47497 * 119.99938 * 179.97438 * 13 12 11 16 16 C 1.39113 * 120.30545 * 0.02562 * 15 13 12 17 17 C 1.38693 * 120.34939 * 179.97438 * 16 15 13 18 18 F 1.35100 * 119.64691 * 179.97438 * 17 16 15 19 19 C 1.38138 * 120.69999 * 0.02562 * 17 16 15 20 20 C 1.38896 * 120.07440 * 359.97438 * 19 17 16 21 21 N 1.37316 * 134.85171 * 179.97438 * 20 19 17 22 22 H 0.97003 * 125.94326 * 0.02562 * 21 20 19 23 23 N 1.28816 * 108.10810 * 180.02562 * 21 20 19 24 24 N 1.28662 * 111.71863 * 359.97438 * 23 21 20 25 25 C 1.34517 * 109.26821 * 359.73460 * 24 23 21 26 26 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 28 28 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 30 30 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 34 34 H 1.07998 * 119.82392 * 359.97438 * 16 15 13 35 35 H 1.08004 * 119.95923 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 1.9827 -7.3713 -0.0005 14 8 0.7873 -7.5935 -0.0013 15 6 2.9412 -8.4925 -0.0004 16 6 4.3102 -8.2456 0.0001 17 6 5.2122 -9.2992 0.0007 18 9 6.5388 -9.0432 0.0006 19 6 4.7686 -10.6074 0.0002 20 6 3.4068 -10.8806 -0.0002 21 7 2.6488 -12.0256 -0.0011 22 1 2.9892 -12.9339 -0.0013 23 7 1.4068 -11.6835 -0.0017 24 7 1.2652 -10.4047 -0.0008 25 6 2.4785 -9.8237 0.0065 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 0.8886 32 1 0.8537 -5.0446 -0.8913 33 1 3.3857 -5.9234 -0.0002 34 1 4.6726 -7.2283 0.0000 35 1 5.4816 -11.4187 0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282388354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:00 Heat of formation + Delta-G solvation = 23.131269 kcal Electronic energy + Delta-G solvation = -21700.105615 eV Core-core repulsion = 18035.526142 eV Total energy + Delta-G solvation = -3664.579473 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.50357 -43.67430 -39.83744 -37.67409 -35.49239 -34.23046 -33.40962 -31.85069 -30.72723 -30.48074 -26.91515 -25.22505 -23.77836 -23.68500 -22.60120 -20.99928 -20.50749 -18.89776 -18.87432 -17.69149 -16.83672 -16.58659 -16.47707 -15.97253 -15.89340 -15.34601 -15.31457 -14.56819 -14.40140 -14.01170 -13.91352 -13.46767 -12.60484 -12.42895 -12.30727 -12.28016 -11.83943 -11.75229 -11.54964 -11.31979 -10.90575 -10.74218 -10.60407 -10.01646 -9.87740 -9.51301 -9.42024 -9.12494 -8.98854 -8.76986 -8.37020 -6.01599 -4.04820 -0.32712 0.48025 1.81051 1.95984 2.43842 3.06343 3.31147 3.37019 3.37581 3.37720 3.40269 3.65733 3.98882 4.26070 4.31145 4.44337 4.53854 4.75234 4.95253 5.24630 5.30192 5.34266 5.43549 5.70600 5.76386 5.93762 6.14621 6.29792 6.39542 6.58184 6.79236 6.98332 7.57242 7.63705 7.76057 7.88319 7.97076 8.25014 8.38085 9.01927 9.59444 11.09694 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.002787 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.450565 B =10044.951730 C =11081.651996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.718 5.718 13 C 0.545 3.455 14 O -0.503 6.503 15 C -0.021 4.021 16 C -0.117 4.117 17 C 0.134 3.866 18 F -0.122 7.122 19 C -0.122 4.122 20 C 0.044 3.956 21 N -0.417 5.417 22 H 0.454 0.546 23 N -0.011 5.011 24 N -0.209 5.209 25 C 0.042 3.958 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.158 0.842 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 -25.061 0.008 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.370 5.370 13 C 0.329 3.671 14 O -0.378 6.378 15 C -0.029 4.029 16 C -0.139 4.139 17 C 0.111 3.889 18 F -0.101 7.101 19 C -0.145 4.145 20 C -0.077 4.077 21 N -0.144 5.144 22 H 0.302 0.698 23 N 0.007 4.993 24 N -0.085 5.085 25 C -0.085 4.085 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.176 0.824 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.725 -25.484 0.007 27.649 hybrid contribution 2.546 0.742 -0.004 2.652 sum 13.271 -24.742 0.003 28.077 Atomic orbital electron populations 1.69965 1.06061 1.26710 1.50494 1.25031 0.94851 0.99304 0.95277 0.86584 0.79799 0.83460 0.78091 1.20664 1.21216 1.19891 1.21197 0.92986 0.90933 1.51003 0.92632 1.19029 0.93844 0.90779 0.97754 1.21908 0.99834 0.93241 1.00966 1.21736 0.91745 0.84640 1.02465 1.46145 1.10967 1.05548 1.74334 1.17815 0.88040 0.82583 0.78670 1.90899 1.15206 1.84243 1.47437 1.19130 0.92683 0.91054 1.00058 1.21344 0.91171 1.00216 1.01182 1.16978 0.78001 0.92339 1.01584 1.91585 1.30237 1.94710 1.93549 1.19856 0.92255 0.96591 1.05772 1.19203 0.94212 0.87199 1.07113 1.44892 1.04457 1.09285 1.55761 0.69840 1.78186 0.98767 1.10115 1.12201 1.75635 1.20481 0.96872 1.15468 1.19545 0.89711 0.93406 1.05801 0.92906 0.96199 0.96196 0.92613 0.92624 0.91321 0.91313 0.76818 0.82430 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.72 -9.87 5.51 -61.36 -0.34 -10.21 16 13 C 0.54 8.28 7.76 -12.49 -0.10 8.18 16 14 O -0.50 -9.83 16.14 5.28 0.09 -9.75 16 15 C -0.02 -0.26 5.89 -104.78 -0.62 -0.87 16 16 C -0.12 -0.98 9.50 -39.09 -0.37 -1.35 16 17 C 0.13 0.98 7.27 -39.45 -0.29 0.69 16 18 F -0.12 -0.91 17.25 2.25 0.04 -0.87 16 19 C -0.12 -0.76 10.03 -39.37 -0.39 -1.15 16 20 C 0.04 0.38 7.40 -84.25 -0.62 -0.24 16 21 N -0.42 -2.98 7.08 32.31 0.23 -2.75 16 22 H 0.45 1.03 8.96 -190.23 -1.71 -0.68 16 23 N -0.01 -0.12 13.29 60.35 0.80 0.68 16 24 N -0.21 -3.10 11.80 32.21 0.38 -2.72 16 25 C 0.04 0.53 6.93 -84.75 -0.59 -0.05 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.40 4.12 6.50 -40.82 -0.27 3.85 16 34 H 0.16 0.97 6.39 -52.49 -0.34 0.63 16 35 H 0.15 0.44 8.06 -52.48 -0.42 0.01 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -35.40 315.28 -6.83 -42.23 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.81 Total: -3.68 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -3.69 Total: -8.03 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 1.81 Total: -40.97 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.40 -6.83 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282388354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.366 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds