Wall clock time and date at job start Tue Mar 31 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48495 * 109.46931 * 270.00289 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46755 * 150.00275 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21595 * 120.00397 * 0.02562 * 13 12 11 15 15 C 1.47497 * 119.99938 * 179.97438 * 13 12 11 16 16 C 1.39113 * 120.30545 * 0.02562 * 15 13 12 17 17 C 1.38693 * 120.34939 * 179.97438 * 16 15 13 18 18 F 1.35100 * 119.64691 * 179.97438 * 17 16 15 19 19 C 1.38138 * 120.69999 * 0.02562 * 17 16 15 20 20 C 1.38896 * 120.07440 * 359.97438 * 19 17 16 21 21 N 1.37316 * 134.85171 * 179.97438 * 20 19 17 22 22 H 0.97003 * 125.94326 * 0.02562 * 21 20 19 23 23 N 1.28816 * 108.10810 * 180.02562 * 21 20 19 24 24 N 1.28662 * 111.71863 * 359.97438 * 23 21 20 25 25 C 1.34517 * 109.26821 * 359.73460 * 24 23 21 26 26 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 28 28 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 29 29 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 30 30 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 33 33 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 34 34 H 1.07998 * 119.82392 * 359.97438 * 16 15 13 35 35 H 1.08004 * 119.95923 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 1.9827 -7.3713 -0.0005 14 8 0.7873 -7.5935 -0.0013 15 6 2.9412 -8.4925 -0.0004 16 6 4.3102 -8.2456 0.0001 17 6 5.2122 -9.2992 0.0007 18 9 6.5388 -9.0432 0.0006 19 6 4.7686 -10.6074 0.0002 20 6 3.4068 -10.8806 -0.0002 21 7 2.6488 -12.0256 -0.0011 22 1 2.9892 -12.9339 -0.0013 23 7 1.4068 -11.6835 -0.0017 24 7 1.2652 -10.4047 -0.0008 25 6 2.4785 -9.8237 0.0065 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6045 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 0.8531 -5.0451 0.8886 32 1 0.8537 -5.0446 -0.8913 33 1 3.3857 -5.9234 -0.0002 34 1 4.6726 -7.2283 0.0000 35 1 5.4816 -11.4187 0.0011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282388354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:00 Heat of formation + Delta-G solvation = -3.725215 kcal Electronic energy + Delta-G solvation = -21701.270199 eV Core-core repulsion = 18035.526142 eV Total energy + Delta-G solvation = -3665.744057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.06063 -44.43148 -40.95929 -38.48698 -36.98831 -35.23191 -35.01832 -33.30410 -31.87506 -31.23259 -28.62248 -26.19290 -25.11344 -24.44247 -23.78393 -22.34159 -21.83463 -19.83702 -19.60631 -18.55172 -18.43234 -17.58195 -17.34050 -16.88414 -16.67780 -16.54935 -16.51909 -16.29175 -15.37379 -15.32478 -14.74370 -14.59526 -14.19393 -13.73859 -13.57572 -13.21985 -13.19608 -12.96162 -12.72471 -12.52099 -12.36067 -12.35626 -12.13107 -11.64368 -11.58511 -11.23306 -10.97411 -10.53119 -10.27097 -10.13265 -9.58018 -8.17209 -6.28605 -1.06690 -0.18133 1.01480 1.38927 1.43666 1.45049 1.54730 1.55921 1.97840 2.43057 2.44258 2.73222 2.93058 3.16837 3.25780 3.60225 3.66450 3.84429 4.09182 4.13045 4.24566 4.29370 4.54392 4.57666 4.63219 4.76661 4.97241 4.99883 5.20487 5.32483 5.39079 5.55071 5.73984 5.84190 5.87147 6.24420 6.48189 6.89533 7.09577 7.14599 7.41092 8.95036 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.002787 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.450565 B =10044.951730 C =11081.651996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.704 5.704 13 C 0.546 3.454 14 O -0.559 6.559 15 C -0.059 4.059 16 C -0.086 4.086 17 C 0.129 3.871 18 F -0.117 7.117 19 C -0.083 4.083 20 C 0.047 3.953 21 N -0.383 5.383 22 H 0.476 0.524 23 N -0.022 5.022 24 N -0.274 5.274 25 C 0.017 3.983 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.416 0.584 34 H 0.180 0.820 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.527 -26.229 0.008 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.006 3.994 12 N -0.357 5.357 13 C 0.332 3.668 14 O -0.438 6.438 15 C -0.066 4.066 16 C -0.109 4.109 17 C 0.106 3.894 18 F -0.095 7.095 19 C -0.106 4.106 20 C -0.076 4.076 21 N -0.115 5.115 22 H 0.329 0.671 23 N -0.004 5.004 24 N -0.148 5.148 25 C -0.111 4.111 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.255 0.745 34 H 0.198 0.802 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 15.060 -26.692 0.007 30.648 hybrid contribution 1.315 0.971 -0.005 1.635 sum 16.376 -25.721 0.002 30.492 Atomic orbital electron populations 1.70121 1.08011 1.27752 1.51829 1.26039 0.95719 1.03611 0.94866 0.85414 0.78729 0.78277 0.78424 1.19863 1.21235 1.18238 1.21698 0.93842 0.91923 1.50239 0.91282 1.18950 0.94502 0.93033 0.95061 1.21612 0.98447 0.91377 1.02507 1.21304 0.91901 0.85222 1.00996 1.45832 1.11392 1.04480 1.74000 1.18329 0.88016 0.83357 0.77051 1.90863 1.17786 1.85053 1.50111 1.18740 0.93205 0.89574 1.05106 1.21542 0.89704 1.01934 0.97684 1.16889 0.77987 0.92374 1.02163 1.91615 1.29663 1.94692 1.93562 1.20277 0.91572 0.97512 1.01211 1.19260 0.94548 0.86284 1.07474 1.44886 1.03279 1.10249 1.53088 0.67127 1.78070 1.00520 1.09400 1.12445 1.75591 1.22641 0.98105 1.18464 1.19871 0.90098 0.94727 1.06379 0.92877 0.99021 0.99014 0.90947 0.90940 0.92994 0.92982 0.74548 0.80237 0.78633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.79 5.27 30.60 0.16 -3.63 16 11 C 0.13 4.56 5.67 86.38 0.49 5.05 16 12 N -0.70 -19.23 5.51 -466.30 -2.57 -21.80 16 13 C 0.55 17.10 7.76 86.68 0.67 17.77 16 14 O -0.56 -23.43 16.14 -4.02 -0.06 -23.49 16 15 C -0.06 -1.37 5.89 -19.97 -0.12 -1.48 16 16 C -0.09 -1.21 9.50 22.59 0.21 -1.00 16 17 C 0.13 1.35 7.27 22.35 0.16 1.51 16 18 F -0.12 -1.18 17.25 44.97 0.78 -0.41 16 19 C -0.08 -0.64 10.03 22.40 0.22 -0.42 16 20 C 0.05 0.68 7.40 39.04 0.29 0.96 16 21 N -0.38 -4.66 7.08 -51.71 -0.37 -5.03 16 22 H 0.48 0.64 8.96 -219.81 -1.97 -1.33 16 23 N -0.02 -0.51 13.29 37.02 0.49 -0.02 16 24 N -0.27 -8.44 11.80 -52.00 -0.61 -9.05 16 25 C 0.02 0.43 6.93 39.99 0.28 0.70 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.42 7.83 6.50 -92.71 -0.60 7.23 16 34 H 0.18 1.56 6.39 -2.91 -0.02 1.54 16 35 H 0.20 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -82.26 315.28 1.78 -80.48 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -1.40 Total: -0.53 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 3.22 Total: -8.59 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -2.77 Total: -93.07 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.06 Total: -23.49 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.78 Total: -0.41 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -82.26 1.78 -80.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282388354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.754 kcal (2) G-P(sol) polarization free energy of solvation -82.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds