Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81399 * 102.99946 * 2 1 4 4 C 1.50701 * 109.47292 * 180.02562 * 3 2 1 5 5 C 1.38581 * 120.47568 * 94.21203 * 4 3 2 6 6 C 1.38616 * 118.50285 * 179.70363 * 5 4 3 7 7 C 1.38596 * 119.36555 * 0.27647 * 6 5 4 8 8 N 1.31503 * 120.90861 * 0.02562 * 7 6 5 9 9 C 1.32814 * 121.63084 * 359.97438 * 8 7 6 10 10 C 1.48004 * 119.72922 * 179.97438 * 9 8 7 11 11 O 1.21565 * 120.00060 * 266.78298 * 10 9 8 12 12 N 1.34775 * 120.00045 * 86.78484 * 10 9 8 13 13 C 1.36783 * 120.00508 * 184.95963 * 12 10 9 14 14 H 1.07998 * 119.99971 * 227.69229 * 13 12 10 15 15 C 1.39102 * 119.99814 * 47.68487 * 13 12 10 16 16 N 1.31330 * 120.00196 * 5.73278 * 15 13 12 17 17 Si 1.86807 * 120.00250 * 185.73159 * 15 13 12 18 18 H 1.48498 * 109.46734 * 59.99673 * 17 15 13 19 19 H 1.48496 * 109.47077 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46883 * 300.00529 * 17 15 13 21 21 C 1.46502 * 119.99996 * 4.95657 * 12 10 9 22 22 C 1.52996 * 117.50209 * 183.27821 * 21 12 10 23 23 C 1.52996 * 117.49914 * 114.61572 * 21 12 10 24 24 H 1.09004 * 109.47078 * 60.00005 * 1 2 3 25 25 H 1.09003 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46955 * 299.99828 * 1 2 3 27 27 H 1.08997 * 109.47015 * 60.00132 * 3 2 1 28 28 H 1.09004 * 109.47151 * 300.00081 * 3 2 1 29 29 H 1.08006 * 120.74599 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.32305 * 180.29885 * 6 5 4 31 31 H 1.08007 * 119.54562 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99802 * 184.99698 * 16 15 13 33 33 H 1.09005 * 115.54777 * 328.94959 * 21 12 10 34 34 H 1.09001 * 117.50140 * 0.02562 * 22 21 12 35 35 H 1.09003 * 117.50269 * 145.02058 * 22 21 12 36 36 H 1.09007 * 117.49711 * 214.97786 * 23 21 12 37 37 H 1.08996 * 117.50130 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 6 4.4075 2.1039 -1.1920 6 6 5.7837 2.2629 -1.1446 7 6 6.4280 2.2451 0.0824 8 7 5.7519 2.0793 1.1980 9 6 4.4329 1.9236 1.1966 10 6 3.7142 1.7395 2.4772 11 8 3.4908 0.6193 2.8933 12 7 3.3073 2.8138 3.1821 13 6 2.7340 2.6473 4.4128 14 1 1.8169 3.1634 4.6556 15 6 3.3322 1.8131 5.3516 16 7 4.5031 1.2744 5.0998 17 14 2.4699 1.4590 6.9705 18 1 1.1587 0.8155 6.7024 19 1 3.3100 0.5494 7.7901 20 1 2.2557 2.7312 7.7058 21 6 3.4791 4.1599 2.6302 22 6 3.0679 5.3420 3.5102 23 6 2.2142 4.9548 2.3001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 3.8826 2.1141 -2.1360 30 1 6.3485 2.3996 -2.0549 31 1 7.5001 2.3691 0.1228 32 1 4.8871 0.6363 5.7213 33 1 4.3423 4.2941 1.9783 34 1 2.6699 5.1183 4.5000 35 1 3.6603 6.2541 3.4370 36 1 2.2454 5.6123 1.4312 37 1 1.2542 4.4761 2.4931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290726866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = 48.001781 kcal Electronic energy + Delta-G solvation = -21788.926484 eV Core-core repulsion = 18659.345903 eV Total energy + Delta-G solvation = -3129.580582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06774 -38.06379 -35.94874 -33.39777 -32.80803 -31.68438 -30.62211 -28.83054 -27.20874 -25.44255 -23.52995 -22.00049 -21.71037 -21.11449 -19.69353 -17.33320 -16.40466 -16.14088 -16.02965 -15.31678 -14.83086 -14.66186 -14.13069 -13.99456 -13.65818 -13.60115 -13.19077 -13.00382 -12.83333 -12.65260 -12.54733 -12.25908 -11.80505 -11.44812 -11.06352 -10.92806 -10.86237 -10.59766 -10.20301 -9.99362 -9.88180 -9.74724 -9.41669 -9.16057 -8.68591 -8.54717 -8.02506 -7.25982 -6.99009 -6.01188 -3.92146 1.12559 1.52679 2.23977 2.89300 3.31684 3.38215 3.38707 3.93449 4.13757 4.30121 4.63907 4.69953 4.80192 4.93083 5.12124 5.17371 5.28590 5.32334 5.36117 5.43028 5.50299 5.59569 5.65927 5.77343 5.85899 5.87117 6.00711 6.08748 6.18237 6.34414 6.40637 6.47858 6.70008 6.91289 6.96665 7.62577 8.27363 8.41524 9.06973 9.15690 9.61412 10.27742 11.02221 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.007282 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.333793 B = 3844.069782 C = 4440.557976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.232 6.232 3 C -0.040 4.040 4 C -0.110 4.110 5 C -0.064 4.064 6 C -0.184 4.184 7 C 0.099 3.901 8 N -0.452 5.452 9 C 0.152 3.848 10 C 0.541 3.459 11 O -0.494 6.494 12 N -0.419 5.419 13 C -0.340 4.340 14 H 0.077 0.923 15 C 0.064 3.936 16 N -0.824 5.824 17 Si 0.912 3.088 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.077 3.923 22 C -0.170 4.170 23 C -0.210 4.210 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.267 0.733 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 4.973 -12.701 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.004 6.004 3 C -0.188 4.188 4 C -0.114 4.114 5 C -0.092 4.092 6 C -0.204 4.204 7 C -0.061 4.061 8 N -0.161 5.161 9 C 0.010 3.990 10 C 0.326 3.674 11 O -0.367 6.367 12 N -0.140 5.140 13 C -0.468 4.468 14 H 0.095 0.905 15 C -0.147 4.147 16 N -0.456 5.456 17 Si 0.739 3.261 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.029 4.029 22 C -0.208 4.208 23 C -0.249 4.249 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.755 3.339 -11.533 12.134 hybrid contribution -1.405 0.914 -0.133 1.682 sum -3.160 4.253 -11.666 12.813 Atomic orbital electron populations 1.23375 0.95543 1.06137 1.04547 1.87274 1.05727 1.09533 1.97852 1.22172 0.94912 0.95953 1.05799 1.20140 0.94498 1.02921 0.93856 1.21320 0.94296 0.96234 0.97320 1.22125 0.94985 1.03786 0.99497 1.22922 1.00331 0.95023 0.87803 1.67995 1.07574 1.10141 1.30426 1.22011 0.89791 0.91860 0.95377 1.17375 0.82593 0.85859 0.81570 1.90680 1.55885 1.23165 1.66949 1.42448 1.55957 1.00222 1.15395 1.18762 1.06769 1.33120 0.88111 0.90525 1.25407 0.94180 0.97022 0.98086 1.69823 1.14496 1.24953 1.36374 0.86280 0.79454 0.78127 0.82236 1.20015 1.21060 1.20177 1.21644 0.95638 0.84995 1.00640 1.23056 1.03226 0.97647 0.96848 1.23332 0.97267 1.04996 0.99304 0.91113 0.88355 0.90308 0.88241 0.89513 0.84884 0.84975 0.82835 0.92307 0.88569 0.87292 0.89826 0.89915 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 10.76 101.05 1.09 -0.59 16 2 S -0.23 -4.12 22.36 -107.50 -2.40 -6.52 16 3 C -0.04 -0.67 5.61 36.01 0.20 -0.47 16 4 C -0.11 -2.00 5.19 -104.07 -0.54 -2.54 16 5 C -0.06 -0.92 9.84 -39.32 -0.39 -1.31 16 6 C -0.18 -2.46 10.11 -39.31 -0.40 -2.86 16 7 C 0.10 1.60 11.18 -17.56 -0.20 1.40 16 8 N -0.45 -9.79 10.30 -9.81 -0.10 -9.89 16 9 C 0.15 3.39 4.78 -83.02 -0.40 2.99 16 10 C 0.54 14.28 4.95 -12.26 -0.06 14.22 16 11 O -0.49 -15.01 15.01 5.31 0.08 -14.93 16 12 N -0.42 -10.66 2.83 -108.75 -0.31 -10.97 16 13 C -0.34 -9.26 7.77 -15.02 -0.12 -9.38 16 14 H 0.08 1.99 7.37 -52.49 -0.39 1.60 16 15 C 0.06 1.82 4.78 -17.45 -0.08 1.74 16 16 N -0.82 -24.98 11.34 55.50 0.63 -24.35 16 17 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 C 0.08 1.62 5.94 -67.93 -0.40 1.22 16 22 C -0.17 -3.13 9.81 -26.70 -0.26 -3.39 16 23 C -0.21 -3.60 10.36 -26.70 -0.28 -3.87 16 24 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.10 1.86 7.26 -51.93 -0.38 1.49 16 28 H 0.09 1.13 8.07 -51.92 -0.42 0.71 16 29 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.15 1.96 8.06 -52.48 -0.42 1.53 16 32 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 33 H 0.10 2.00 7.25 -51.93 -0.38 1.62 16 34 H 0.11 2.18 6.80 -51.93 -0.35 1.82 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -34.72 331.89 -8.81 -43.53 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.85 Total: 4.24 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.83 Total: -2.84 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.22 Total: -45.21 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.40 Total: -6.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.72 -8.81 -43.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290726866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.536 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds