Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81399 * 102.99946 * 2 1 4 4 C 1.50701 * 109.47292 * 180.02562 * 3 2 1 5 5 C 1.38581 * 120.47568 * 94.21203 * 4 3 2 6 6 C 1.38616 * 118.50285 * 179.70363 * 5 4 3 7 7 C 1.38596 * 119.36555 * 0.27647 * 6 5 4 8 8 N 1.31503 * 120.90861 * 0.02562 * 7 6 5 9 9 C 1.32814 * 121.63084 * 359.97438 * 8 7 6 10 10 C 1.48004 * 119.72922 * 179.97438 * 9 8 7 11 11 O 1.21565 * 120.00060 * 266.78298 * 10 9 8 12 12 N 1.34775 * 120.00045 * 86.78484 * 10 9 8 13 13 C 1.36783 * 120.00508 * 184.95963 * 12 10 9 14 14 H 1.07998 * 119.99971 * 227.69229 * 13 12 10 15 15 C 1.39102 * 119.99814 * 47.68487 * 13 12 10 16 16 N 1.31330 * 120.00196 * 5.73278 * 15 13 12 17 17 Si 1.86807 * 120.00250 * 185.73159 * 15 13 12 18 18 H 1.48498 * 109.46734 * 59.99673 * 17 15 13 19 19 H 1.48496 * 109.47077 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46883 * 300.00529 * 17 15 13 21 21 C 1.46502 * 119.99996 * 4.95657 * 12 10 9 22 22 C 1.52996 * 117.50209 * 183.27821 * 21 12 10 23 23 C 1.52996 * 117.49914 * 114.61572 * 21 12 10 24 24 H 1.09004 * 109.47078 * 60.00005 * 1 2 3 25 25 H 1.09003 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46955 * 299.99828 * 1 2 3 27 27 H 1.08997 * 109.47015 * 60.00132 * 3 2 1 28 28 H 1.09004 * 109.47151 * 300.00081 * 3 2 1 29 29 H 1.08006 * 120.74599 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.32305 * 180.29885 * 6 5 4 31 31 H 1.08007 * 119.54562 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99802 * 184.99698 * 16 15 13 33 33 H 1.09005 * 115.54777 * 328.94959 * 21 12 10 34 34 H 1.09001 * 117.50140 * 0.02562 * 22 21 12 35 35 H 1.09003 * 117.50269 * 145.02058 * 22 21 12 36 36 H 1.09007 * 117.49711 * 214.97786 * 23 21 12 37 37 H 1.08996 * 117.50130 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 6 4.4075 2.1039 -1.1920 6 6 5.7837 2.2629 -1.1446 7 6 6.4280 2.2451 0.0824 8 7 5.7519 2.0793 1.1980 9 6 4.4329 1.9236 1.1966 10 6 3.7142 1.7395 2.4772 11 8 3.4908 0.6193 2.8933 12 7 3.3073 2.8138 3.1821 13 6 2.7340 2.6473 4.4128 14 1 1.8169 3.1634 4.6556 15 6 3.3322 1.8131 5.3516 16 7 4.5031 1.2744 5.0998 17 14 2.4699 1.4590 6.9705 18 1 1.1587 0.8155 6.7024 19 1 3.3100 0.5494 7.7901 20 1 2.2557 2.7312 7.7058 21 6 3.4791 4.1599 2.6302 22 6 3.0679 5.3420 3.5102 23 6 2.2142 4.9548 2.3001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 3.8826 2.1141 -2.1360 30 1 6.3485 2.3996 -2.0549 31 1 7.5001 2.3691 0.1228 32 1 4.8871 0.6363 5.7213 33 1 4.3423 4.2941 1.9783 34 1 2.6699 5.1183 4.5000 35 1 3.6603 6.2541 3.4370 36 1 2.2454 5.6123 1.4312 37 1 1.2542 4.4761 2.4931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290726866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = 24.940780 kcal Electronic energy + Delta-G solvation = -21789.926485 eV Core-core repulsion = 18659.345903 eV Total energy + Delta-G solvation = -3130.580582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50077 -39.75520 -37.69730 -34.87131 -34.62944 -33.19866 -32.38498 -29.92746 -28.55379 -27.28921 -25.08980 -23.33200 -23.13568 -22.74399 -21.45979 -19.01425 -17.93498 -17.76035 -17.38985 -16.84792 -16.54381 -16.23467 -15.65426 -15.54455 -15.08808 -14.75783 -14.57754 -14.52875 -14.33154 -14.05621 -13.76022 -13.63367 -13.47566 -12.97908 -12.82044 -12.69476 -12.58999 -12.27332 -12.12392 -11.68792 -11.29701 -11.15629 -10.79226 -10.66768 -10.55058 -10.00852 -9.71591 -8.98050 -8.58021 -8.11306 -6.06423 -0.16376 0.30567 1.02301 1.36778 1.43409 1.48831 1.69449 2.14446 2.40041 2.82054 3.00494 3.10048 3.31016 3.49967 3.71906 3.78905 4.04284 4.06095 4.13432 4.24481 4.31082 4.33123 4.35823 4.39815 4.46863 4.66807 4.77095 4.82047 4.84202 4.97773 5.15907 5.19467 5.23555 5.42097 5.47269 5.75184 6.19459 7.02295 7.08870 7.19685 7.63569 8.34179 8.90900 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.007282 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.333793 B = 3844.069782 C = 4440.557976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.309 6.309 3 C -0.024 4.024 4 C -0.116 4.116 5 C -0.056 4.056 6 C -0.155 4.155 7 C 0.086 3.914 8 N -0.506 5.506 9 C 0.114 3.886 10 C 0.539 3.461 11 O -0.557 6.557 12 N -0.433 5.433 13 C -0.346 4.346 14 H 0.082 0.918 15 C 0.008 3.992 16 N -0.870 5.870 17 Si 0.975 3.025 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.253 1.253 21 C 0.045 3.955 22 C -0.167 4.167 23 C -0.173 4.173 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.179 0.821 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.257 0.743 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 7.117 -15.870 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.082 6.082 3 C -0.172 4.172 4 C -0.120 4.120 5 C -0.083 4.083 6 C -0.174 4.174 7 C -0.073 4.073 8 N -0.216 5.216 9 C -0.027 4.027 10 C 0.325 3.675 11 O -0.434 6.434 12 N -0.154 5.154 13 C -0.474 4.474 14 H 0.100 0.900 15 C -0.198 4.198 16 N -0.505 5.505 17 Si 0.799 3.201 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.178 1.178 21 C -0.061 4.061 22 C -0.204 4.204 23 C -0.211 4.211 24 H 0.122 0.878 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.196 0.804 30 H 0.204 0.796 31 H 0.200 0.800 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.534 5.553 -14.708 15.924 hybrid contribution -1.152 0.321 0.687 1.380 sum -3.686 5.874 -14.021 15.642 Atomic orbital electron populations 1.23400 0.91208 1.07348 1.05620 1.87494 1.10693 1.12002 1.97981 1.22134 0.94431 0.94327 1.06272 1.20303 0.95110 1.02751 0.93798 1.21854 0.94871 0.94168 0.97412 1.22669 0.94863 0.99737 1.00128 1.23514 1.01600 0.94510 0.87715 1.67775 1.07869 1.12149 1.33852 1.21352 0.90418 0.96286 0.94630 1.17991 0.81760 0.85034 0.82672 1.90602 1.58228 1.25382 1.69236 1.42656 1.55619 1.02110 1.14990 1.19074 1.06803 1.32485 0.88991 0.90043 1.26326 0.94803 0.97086 1.01612 1.70002 1.16565 1.26365 1.37545 0.85303 0.77881 0.78609 0.78265 1.20069 1.21560 1.17765 1.21750 0.98115 0.83571 1.02620 1.23131 1.03571 0.97501 0.96219 1.23335 0.94947 1.03025 0.99834 0.87777 0.87122 0.91327 0.91219 0.85173 0.80362 0.79622 0.80022 0.93347 0.88655 0.89372 0.86778 0.85933 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 10.76 113.37 1.22 -1.48 16 2 S -0.31 -11.00 22.36 -56.49 -1.26 -12.26 16 3 C -0.02 -0.77 5.61 71.24 0.40 -0.37 16 4 C -0.12 -4.05 5.19 -19.51 -0.10 -4.15 16 5 C -0.06 -1.37 9.84 22.44 0.22 -1.15 16 6 C -0.15 -3.43 10.11 22.45 0.23 -3.21 16 7 C 0.09 2.62 11.18 84.83 0.95 3.57 16 8 N -0.51 -22.33 10.30 -184.94 -1.90 -24.23 16 9 C 0.11 5.20 4.78 41.86 0.20 5.41 16 10 C 0.54 29.90 4.95 86.83 0.43 30.33 16 11 O -0.56 -36.28 15.01 -3.92 -0.06 -36.33 16 12 N -0.43 -22.96 2.83 -616.24 -1.74 -24.70 16 13 C -0.35 -19.61 7.77 84.13 0.65 -18.96 16 14 H 0.08 4.37 7.37 -2.91 -0.02 4.35 16 15 C 0.01 0.45 4.78 84.98 0.41 0.86 16 16 N -0.87 -56.12 11.34 21.69 0.25 -55.88 16 17 Si 0.98 46.56 29.56 68.60 2.03 48.59 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 21 C 0.04 1.89 5.94 44.99 0.27 2.15 16 22 C -0.17 -5.96 9.81 30.62 0.30 -5.66 16 23 C -0.17 -5.59 10.36 30.62 0.32 -5.27 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.64 7.26 -2.39 -0.02 2.62 16 28 H 0.13 2.93 8.07 -2.39 -0.02 2.91 16 29 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.18 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 33 H 0.10 3.99 7.25 -2.38 -0.02 3.98 16 34 H 0.09 3.53 6.80 -2.39 -0.02 3.51 16 35 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -85.31 331.89 3.86 -81.44 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.07 Total: 21.31 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.49 Total: 2.07 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -3.40 Total: -104.81 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.06 Total: -36.33 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.26 Total: -12.26 kcal Total: -85.31 3.86 -81.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290726866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.383 kcal (2) G-P(sol) polarization free energy of solvation -85.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds