Wall clock time and date at job start Tue Mar 31 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35824 * 117.00171 * 2 1 4 4 C 1.38015 * 120.17759 * 0.23349 * 3 2 1 5 5 C 1.38806 * 120.41436 * 180.27511 * 4 3 2 6 6 C 1.37932 * 120.69883 * 359.48505 * 5 4 3 7 7 F 1.35093 * 119.98596 * 180.27697 * 6 5 4 8 8 C 1.39298 * 120.03450 * 0.25869 * 6 5 4 9 9 N 1.37683 * 133.04895 * 179.97438 * 8 6 5 10 10 H 0.97002 * 125.63531 * 0.02562 * 9 8 6 11 11 C 1.38254 * 108.72202 * 180.02562 * 9 8 6 12 12 C 1.46774 * 125.46595 * 180.02562 * 11 9 8 13 13 O 1.21717 * 120.00155 * 170.04072 * 12 11 9 14 14 N 1.34777 * 119.99777 * 350.03385 * 12 11 9 15 15 C 1.46505 * 119.99830 * 359.47961 * 14 12 11 16 16 C 1.36830 * 119.99937 * 179.47097 * 14 12 11 17 17 H 1.07997 * 119.99943 * 19.39106 * 16 14 12 18 18 C 1.39046 * 119.99826 * 199.38712 * 16 14 12 19 19 N 1.31376 * 119.99887 * 18.97630 * 18 16 14 20 20 Si 1.86795 * 119.99874 * 198.97159 * 18 16 14 21 21 H 1.48501 * 109.47044 * 94.99089 * 20 18 16 22 22 H 1.48498 * 109.47400 * 214.99242 * 20 18 16 23 23 H 1.48501 * 109.47348 * 334.99117 * 20 18 16 24 24 C 1.36083 * 109.07149 * 359.97438 * 11 9 8 25 25 C 1.40611 * 120.18558 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46928 * 299.99757 * 1 2 3 27 27 H 1.08998 * 109.46654 * 59.99945 * 1 2 3 28 28 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.79660 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.65118 * 179.76611 * 5 4 3 31 31 H 1.08995 * 109.47172 * 83.82726 * 15 14 12 32 32 H 1.09004 * 109.46625 * 203.82542 * 15 14 12 33 33 H 1.08996 * 109.46912 * 323.81747 * 15 14 12 34 34 H 0.97001 * 119.99519 * 179.97438 * 19 18 16 35 35 H 1.07999 * 126.11410 * 180.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2977 2.3700 0.0049 5 6 1.9227 3.6094 -0.0009 6 6 3.2988 3.7040 -0.0008 7 9 3.8921 4.9177 -0.0008 8 6 4.0771 2.5488 -0.0004 9 7 5.4367 2.3315 -0.0008 10 1 6.1192 3.0208 -0.0010 11 6 5.6683 0.9685 -0.0007 12 6 6.9895 0.3292 -0.0004 13 8 7.0851 -0.8704 0.1819 14 7 8.0968 1.0705 -0.2022 15 6 7.9809 2.5126 -0.4332 16 6 9.3293 0.4762 -0.1912 17 1 9.4157 -0.5905 -0.3358 18 6 10.4704 1.2459 0.0061 19 7 10.3720 2.4410 0.5426 20 14 12.1433 0.5804 -0.4917 21 1 12.4829 1.0638 -1.8541 22 1 13.1704 1.0524 0.4713 23 1 12.1066 -0.9042 -0.4881 24 6 4.4748 0.3147 0.0003 25 6 3.4497 1.2883 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2192 2.3130 0.0091 30 1 1.3253 4.5091 -0.0008 31 1 7.9138 3.0296 0.5240 32 1 8.8579 2.8652 -0.9760 33 1 7.0848 2.7157 -1.0196 34 1 11.1681 2.9777 0.6806 35 1 4.3357 -0.7563 0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335784861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:57 Heat of formation + Delta-G solvation = -26.342451 kcal Electronic energy + Delta-G solvation = -22934.444833 eV Core-core repulsion = 19235.427267 eV Total energy + Delta-G solvation = -3699.017566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.64645 -41.36712 -39.32717 -38.07104 -35.71309 -35.04815 -32.10292 -31.23654 -29.41896 -28.53711 -27.25023 -26.62506 -25.18732 -22.92754 -21.99814 -20.92509 -19.60465 -18.25179 -17.56396 -17.04057 -16.64288 -16.36929 -15.93584 -15.42976 -15.36742 -15.01151 -14.52778 -14.48364 -14.17254 -13.68820 -13.39135 -13.19080 -12.83413 -12.53265 -12.25724 -12.12092 -12.07648 -11.90810 -11.57787 -11.47881 -11.05665 -10.95734 -10.64688 -10.46280 -10.43819 -9.24991 -9.20015 -8.80791 -8.18013 -7.99842 -7.20030 -6.60548 -4.04173 0.98352 1.53860 2.49331 3.08303 3.10494 3.15753 3.21340 3.36405 3.77159 3.95180 4.18399 4.43329 4.54169 4.78110 4.91131 4.95819 5.00034 5.05863 5.19257 5.35836 5.37607 5.49779 5.61269 5.76762 5.94194 6.20453 6.22454 6.28828 6.38292 6.68954 6.75268 6.85680 7.07423 7.35565 7.43542 7.60785 7.89410 8.23566 8.93007 9.12280 9.70294 10.44380 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.004220 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.673507 B = 6633.716141 C = 7651.410084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.173 3.827 4 C -0.230 4.230 5 C -0.099 4.099 6 C 0.051 3.949 7 F -0.146 7.146 8 C 0.090 3.910 9 N -0.571 5.571 10 H 0.431 0.569 11 C 0.068 3.932 12 C 0.491 3.509 13 O -0.570 6.570 14 N -0.427 5.427 15 C 0.083 3.917 16 C -0.306 4.306 17 H 0.109 0.891 18 C 0.032 3.968 19 N -0.869 5.869 20 Si 0.931 3.069 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.265 1.265 24 C -0.132 4.132 25 C -0.104 4.104 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.273 0.727 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 3.941 -2.031 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.126 3.874 4 C -0.251 4.251 5 C -0.119 4.119 6 C 0.029 3.971 7 F -0.125 7.125 8 C -0.023 4.023 9 N -0.184 5.184 10 H 0.280 0.720 11 C -0.042 4.042 12 C 0.280 3.720 13 O -0.454 6.454 14 N -0.143 5.143 15 C -0.061 4.061 16 C -0.434 4.434 17 H 0.127 0.873 18 C -0.173 4.173 19 N -0.507 5.507 20 Si 0.757 3.243 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.189 1.189 24 C -0.158 4.158 25 C -0.110 4.110 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.429 3.443 -1.886 15.920 hybrid contribution 0.943 0.823 -0.105 1.256 sum -14.486 4.266 -1.990 15.232 Atomic orbital electron populations 1.23072 0.78566 1.03874 1.01329 1.86091 1.21094 1.26784 1.87944 1.18440 0.89748 0.84305 0.94910 1.20556 0.99652 0.90827 1.14016 1.20398 0.91124 0.98445 1.01931 1.16486 0.90265 0.77421 1.12929 1.91448 1.84281 1.41942 1.94849 1.18045 0.84683 0.93586 1.05947 1.43651 1.05082 1.07967 1.61737 0.71999 1.20944 0.96577 0.81149 1.05578 1.16874 0.81808 0.87266 0.86080 1.90692 1.85184 1.13630 1.55897 1.43556 1.05744 1.06657 1.58366 1.21996 1.00627 0.82978 1.00519 1.19821 0.80805 0.95479 1.47297 0.87294 1.25421 1.00459 0.96002 0.95435 1.70006 1.31055 1.11415 1.38187 0.85818 0.80344 0.79728 0.78403 1.20130 1.20742 1.18927 1.20633 0.88318 0.99290 1.07516 1.17200 0.90362 0.92491 1.10976 0.92609 0.92609 0.88310 0.84862 0.84580 0.92389 0.88731 0.94541 0.91671 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.14 10.50 -19.19 -0.20 -4.34 16 3 C 0.17 2.54 6.73 -38.77 -0.26 2.28 16 4 C -0.23 -2.77 9.03 -39.45 -0.36 -3.13 16 5 C -0.10 -1.23 9.99 -39.48 -0.39 -1.63 16 6 C 0.05 0.78 7.31 -39.30 -0.29 0.49 16 7 F -0.15 -2.25 17.27 2.25 0.04 -2.21 16 8 C 0.09 1.56 7.23 -83.87 -0.61 0.96 16 9 N -0.57 -10.61 5.12 -7.31 -0.04 -10.64 16 10 H 0.43 7.51 4.82 -40.82 -0.20 7.32 16 11 C 0.07 1.45 6.58 -82.29 -0.54 0.91 16 12 C 0.49 12.34 7.59 -12.81 -0.10 12.24 16 13 O -0.57 -16.01 16.52 5.17 0.09 -15.93 16 14 N -0.43 -10.76 3.01 -123.66 -0.37 -11.13 16 15 C 0.08 1.77 7.18 59.85 0.43 2.20 16 16 C -0.31 -8.26 9.30 -15.02 -0.14 -8.40 16 17 H 0.11 3.07 7.39 -52.49 -0.39 2.68 16 18 C 0.03 0.80 4.91 -17.45 -0.09 0.72 16 19 N -0.87 -21.98 10.91 55.50 0.61 -21.38 16 20 Si 0.93 19.75 29.59 -169.99 -5.03 14.72 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 C -0.13 -2.58 10.54 -39.16 -0.41 -3.00 16 25 C -0.10 -1.83 6.11 -106.84 -0.65 -2.48 16 26 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 27 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.13 1.17 6.27 -52.49 -0.33 0.84 16 30 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.06 1.24 7.52 -51.93 -0.39 0.85 16 32 H 0.09 2.11 6.48 -51.93 -0.34 1.77 16 33 H 0.04 0.68 5.22 -51.93 -0.27 0.41 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.16 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -30.57 302.14 -5.88 -36.45 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.11 Total: 7.52 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.41 Total: 2.38 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.20 Total: -43.15 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.12 Total: -20.27 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.57 -5.88 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.105 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds