Wall clock time and date at job start Tue Mar 31 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35824 * 117.00171 * 2 1 4 4 C 1.38015 * 120.17759 * 0.23349 * 3 2 1 5 5 C 1.38806 * 120.41436 * 180.27511 * 4 3 2 6 6 C 1.37932 * 120.69883 * 359.48505 * 5 4 3 7 7 F 1.35093 * 119.98596 * 180.27697 * 6 5 4 8 8 C 1.39298 * 120.03450 * 0.25869 * 6 5 4 9 9 N 1.37683 * 133.04895 * 179.97438 * 8 6 5 10 10 H 0.97002 * 125.63531 * 0.02562 * 9 8 6 11 11 C 1.38254 * 108.72202 * 180.02562 * 9 8 6 12 12 C 1.46774 * 125.46595 * 180.02562 * 11 9 8 13 13 O 1.21717 * 120.00155 * 170.04072 * 12 11 9 14 14 N 1.34777 * 119.99777 * 350.03385 * 12 11 9 15 15 C 1.46505 * 119.99830 * 359.47961 * 14 12 11 16 16 C 1.36830 * 119.99937 * 179.47097 * 14 12 11 17 17 H 1.07997 * 119.99943 * 19.39106 * 16 14 12 18 18 C 1.39046 * 119.99826 * 199.38712 * 16 14 12 19 19 N 1.31376 * 119.99887 * 18.97630 * 18 16 14 20 20 Si 1.86795 * 119.99874 * 198.97159 * 18 16 14 21 21 H 1.48501 * 109.47044 * 94.99089 * 20 18 16 22 22 H 1.48498 * 109.47400 * 214.99242 * 20 18 16 23 23 H 1.48501 * 109.47348 * 334.99117 * 20 18 16 24 24 C 1.36083 * 109.07149 * 359.97438 * 11 9 8 25 25 C 1.40611 * 120.18558 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46928 * 299.99757 * 1 2 3 27 27 H 1.08998 * 109.46654 * 59.99945 * 1 2 3 28 28 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.79660 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.65118 * 179.76611 * 5 4 3 31 31 H 1.08995 * 109.47172 * 83.82726 * 15 14 12 32 32 H 1.09004 * 109.46625 * 203.82542 * 15 14 12 33 33 H 1.08996 * 109.46912 * 323.81747 * 15 14 12 34 34 H 0.97001 * 119.99519 * 179.97438 * 19 18 16 35 35 H 1.07999 * 126.11410 * 180.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2977 2.3700 0.0049 5 6 1.9227 3.6094 -0.0009 6 6 3.2988 3.7040 -0.0008 7 9 3.8921 4.9177 -0.0008 8 6 4.0771 2.5488 -0.0004 9 7 5.4367 2.3315 -0.0008 10 1 6.1192 3.0208 -0.0010 11 6 5.6683 0.9685 -0.0007 12 6 6.9895 0.3292 -0.0004 13 8 7.0851 -0.8704 0.1819 14 7 8.0968 1.0705 -0.2022 15 6 7.9809 2.5126 -0.4332 16 6 9.3293 0.4762 -0.1912 17 1 9.4157 -0.5905 -0.3358 18 6 10.4704 1.2459 0.0061 19 7 10.3720 2.4410 0.5426 20 14 12.1433 0.5804 -0.4917 21 1 12.4829 1.0638 -1.8541 22 1 13.1704 1.0524 0.4713 23 1 12.1066 -0.9042 -0.4881 24 6 4.4748 0.3147 0.0003 25 6 3.4497 1.2883 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2192 2.3130 0.0091 30 1 1.3253 4.5091 -0.0008 31 1 7.9138 3.0296 0.5240 32 1 8.8579 2.8652 -0.9760 33 1 7.0848 2.7157 -1.0196 34 1 11.1681 2.9777 0.6806 35 1 4.3357 -0.7563 0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335784861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:57 Heat of formation + Delta-G solvation = -45.954100 kcal Electronic energy + Delta-G solvation = -22935.295258 eV Core-core repulsion = 19235.427267 eV Total energy + Delta-G solvation = -3699.867990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.78661 -42.74784 -40.61785 -39.66050 -37.01768 -36.87283 -33.95843 -32.66583 -30.77563 -29.70975 -28.56111 -27.94925 -26.96432 -24.44599 -23.18147 -22.29415 -21.16480 -19.63549 -19.08287 -18.71744 -17.82958 -17.76989 -17.07212 -16.87368 -16.58852 -16.37360 -16.22403 -15.94719 -15.50897 -15.23509 -14.85918 -14.70466 -14.12620 -13.93489 -13.68602 -13.54972 -13.42118 -13.26389 -13.06239 -12.83549 -12.63157 -12.43750 -12.15670 -11.99189 -11.60830 -11.15525 -10.81215 -10.53993 -9.95280 -9.48682 -8.55642 -8.42541 -6.08632 -0.29256 0.38176 0.97448 1.39948 1.41798 1.53095 1.78661 2.19371 2.30809 2.36023 2.63203 2.78848 2.98720 3.28175 3.61828 3.73258 3.87875 4.05782 4.10277 4.16811 4.38924 4.51398 4.52881 4.61375 4.73392 4.80976 4.87402 4.97546 5.13426 5.19133 5.33454 5.39603 5.49385 5.74161 5.92592 6.21725 6.30635 6.45958 6.95121 7.17928 7.75776 8.50460 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025808 B = 0.004220 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.673507 B = 6633.716141 C = 7651.410084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.174 3.826 4 C -0.215 4.215 5 C -0.066 4.066 6 C 0.023 3.977 7 F -0.150 7.150 8 C 0.090 3.910 9 N -0.573 5.573 10 H 0.432 0.568 11 C 0.034 3.966 12 C 0.484 3.516 13 O -0.616 6.616 14 N -0.440 5.440 15 C 0.095 3.905 16 C -0.351 4.351 17 H 0.082 0.918 18 C 0.004 3.996 19 N -0.883 5.883 20 Si 0.997 3.003 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.122 4.122 25 C -0.132 4.132 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.179 0.821 30 H 0.178 0.822 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.281 0.719 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.853 5.742 -2.335 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.126 3.874 4 C -0.234 4.234 5 C -0.086 4.086 6 C 0.001 3.999 7 F -0.129 7.129 8 C -0.023 4.023 9 N -0.187 5.187 10 H 0.281 0.719 11 C -0.076 4.076 12 C 0.274 3.726 13 O -0.504 6.504 14 N -0.155 5.155 15 C -0.048 4.048 16 C -0.479 4.479 17 H 0.100 0.900 18 C -0.200 4.200 19 N -0.520 5.520 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.149 4.149 25 C -0.138 4.138 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.196 0.804 30 H 0.195 0.805 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.332 5.286 -2.191 19.204 hybrid contribution 1.495 0.285 0.022 1.522 sum -16.837 5.571 -2.169 17.867 Atomic orbital electron populations 1.23486 0.75580 1.05826 1.03109 1.86080 1.24165 1.26468 1.87495 1.18591 0.88822 0.85893 0.94064 1.21053 1.01654 0.89334 1.11408 1.20970 0.89979 1.00258 0.97405 1.16740 0.91202 0.76681 1.15241 1.91440 1.84550 1.41773 1.95091 1.18398 0.83904 0.94668 1.05281 1.43395 1.05995 1.06704 1.62563 0.71923 1.20277 0.94883 0.82652 1.09819 1.17418 0.83215 0.86982 0.84987 1.90622 1.86359 1.15570 1.57821 1.43743 1.05420 1.07978 1.58402 1.21946 1.01354 0.80926 1.00599 1.19775 0.82504 0.94991 1.50590 0.89964 1.26195 1.03222 0.96165 0.94379 1.70051 1.32386 1.11970 1.37586 0.84863 0.75909 0.78557 0.78713 1.18669 1.19606 1.19729 1.20722 0.88866 0.99476 1.05798 1.17353 0.91757 0.91710 1.12946 0.90733 0.90645 0.86642 0.80422 0.80476 0.92649 0.89794 0.91884 0.90887 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -8.03 10.50 -91.58 -0.96 -8.99 16 3 C 0.17 4.63 6.73 22.80 0.15 4.78 16 4 C -0.21 -4.06 9.03 22.35 0.20 -3.85 16 5 C -0.07 -1.32 9.99 22.33 0.22 -1.10 16 6 C 0.02 0.66 7.31 22.45 0.16 0.82 16 7 F -0.15 -4.28 17.27 44.97 0.78 -3.51 16 8 C 0.09 3.05 7.23 39.11 0.28 3.34 16 9 N -0.57 -21.82 5.12 -177.05 -0.91 -22.72 16 10 H 0.43 15.49 4.82 -92.71 -0.45 15.05 16 11 C 0.03 1.50 6.58 39.86 0.26 1.76 16 12 C 0.48 26.00 7.59 86.47 0.66 26.65 16 13 O -0.62 -37.29 16.52 -4.40 -0.07 -37.36 16 14 N -0.44 -23.49 3.01 -663.35 -2.00 -25.48 16 15 C 0.10 4.23 7.18 127.77 0.92 5.15 16 16 C -0.35 -20.01 9.30 84.11 0.78 -19.23 16 17 H 0.08 5.00 7.39 -2.91 -0.02 4.98 16 18 C 0.00 0.22 4.91 84.95 0.42 0.64 16 19 N -0.88 -45.32 10.91 21.68 0.24 -45.09 16 20 Si 1.00 41.14 29.59 68.60 2.03 43.17 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C -0.12 -4.97 10.54 22.54 0.24 -4.73 16 25 C -0.13 -4.57 6.11 -21.30 -0.13 -4.70 16 26 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 27 H 0.08 0.64 7.67 -2.39 -0.02 0.63 16 28 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.18 1.82 6.27 -2.91 -0.02 1.80 16 30 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.06 2.45 7.52 -2.39 -0.02 2.44 16 32 H 0.08 3.86 6.48 -2.38 -0.02 3.85 16 33 H 0.06 2.43 5.22 -2.39 -0.01 2.42 16 34 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 35 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -70.98 302.14 5.10 -65.88 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.72 Total: 23.28 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 5.28 Total: 10.82 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -2.67 Total: -93.30 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -1.03 Total: -46.35 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -70.98 5.10 -65.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.929 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds