Wall clock time and date at job start Tue Mar 31 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99698 * 2 1 4 4 O 1.20820 * 119.99802 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99967 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47002 * 180.02562 * 5 3 2 7 7 C 1.36942 * 119.99460 * 269.99776 * 6 5 3 8 8 H 1.08006 * 119.99311 * 185.80240 * 7 6 5 9 9 C 1.38805 * 120.00358 * 5.79998 * 7 6 5 10 10 N 1.31624 * 120.00055 * 25.44111 * 9 7 6 11 11 Si 1.86801 * 120.00138 * 205.44039 * 9 7 6 12 12 H 1.48507 * 109.46858 * 90.00080 * 11 9 7 13 13 H 1.48502 * 109.47470 * 209.99859 * 11 9 7 14 14 H 1.48500 * 109.47467 * 330.00311 * 11 9 7 15 15 C 1.46496 * 120.00351 * 90.00076 * 6 5 3 16 16 C 1.50697 * 109.47522 * 88.53702 * 15 6 5 17 17 C 1.37921 * 120.06124 * 265.23448 * 16 15 6 18 18 C 1.38401 * 120.21190 * 180.25153 * 17 16 15 19 19 C 1.38271 * 120.35244 * 359.78987 * 18 17 16 20 20 C 1.38239 * 120.12047 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.11125 * 179.97438 * 20 19 18 22 22 C 1.39646 * 120.06562 * 85.02057 * 16 15 6 23 23 C 1.43194 * 120.17214 * 0.02562 * 22 16 15 24 24 N 7.50402 * 127.77767 * 356.08164 * 2 1 3 25 25 H 1.08997 * 109.47072 * 299.99652 * 1 2 3 26 26 H 1.09000 * 109.47088 * 60.00427 * 1 2 3 27 27 H 1.08997 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47529 * 59.99687 * 5 3 2 29 29 H 1.09000 * 109.47255 * 299.99782 * 5 3 2 30 30 H 0.97001 * 120.00239 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47045 * 328.53301 * 15 6 5 32 32 H 1.09006 * 109.47086 * 208.53721 * 15 6 5 33 33 H 1.07997 * 119.89199 * 0.02562 * 17 16 15 34 34 H 1.08008 * 119.82104 * 179.76523 * 18 17 16 35 35 H 1.08001 * 119.94066 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1751 3.3372 -1.1855 8 1 4.5708 4.3422 -1.1874 9 6 3.8630 2.7119 -2.3848 10 7 2.9582 1.7564 -2.4128 11 14 4.7269 3.2265 -3.9590 12 1 5.9544 2.4104 -4.1395 13 1 3.8179 3.0155 -5.1143 14 1 5.0953 4.6626 -3.8749 15 6 4.1898 3.3816 1.2692 16 6 5.6143 3.1895 1.7217 17 6 5.9284 2.1769 2.6039 18 6 7.2348 2.0009 3.0255 19 6 8.2364 2.8347 2.5635 20 6 7.9383 3.8511 1.6753 21 9 8.9170 4.6660 1.2244 22 6 6.6196 4.0336 1.2451 23 6 6.3013 5.0844 0.3259 24 7 6.0490 5.9173 -0.4053 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.9557 0.7811 -0.8907 29 1 3.9564 0.7808 0.8892 30 1 2.7397 1.3196 -3.2509 31 1 3.5120 2.9795 2.0221 32 1 3.9920 4.4449 1.1331 33 1 5.1518 1.5216 2.9696 34 1 7.4731 1.2083 3.7194 35 1 9.2536 2.6917 2.8973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428241964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:27 Heat of formation + Delta-G solvation = -38.461763 kcal Electronic energy + Delta-G solvation = -23376.799922 eV Core-core repulsion = 19677.256824 eV Total energy + Delta-G solvation = -3699.543098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.88702 -39.40484 -38.90640 -36.17633 -35.82971 -34.65619 -32.39419 -30.96240 -30.33031 -28.25468 -26.31869 -25.93271 -23.65615 -22.64301 -21.14686 -19.82892 -18.64335 -17.24948 -16.82838 -16.36670 -16.31510 -15.71661 -15.47466 -15.16308 -14.91411 -14.82697 -13.86888 -13.78329 -13.60107 -13.14552 -13.05315 -12.84666 -12.51096 -12.35514 -12.28767 -11.85052 -11.70806 -11.44116 -11.25170 -11.13534 -11.00655 -10.81755 -10.52136 -10.14015 -9.92590 -9.68692 -9.25875 -8.77293 -8.61963 -8.57555 -7.30053 -6.02535 -3.28591 0.85513 1.25993 3.14229 3.21530 3.34981 3.42401 3.47543 3.77219 3.91905 4.03737 4.16616 4.28514 4.44816 4.77514 4.96650 5.21602 5.24472 5.29800 5.35584 5.73272 5.75823 5.81220 5.83620 6.02918 6.04479 6.10224 6.18363 6.32974 6.35323 6.59765 6.63150 6.85325 7.03546 7.61906 7.72790 7.98392 8.02843 8.91412 9.30273 9.58962 9.96810 11.08284 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.006706 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.756072 B = 4174.199462 C = 5498.344570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.381 6.381 3 C 0.466 3.534 4 O -0.510 6.510 5 C 0.185 3.815 6 N -0.558 5.558 7 C -0.261 4.261 8 H 0.091 0.909 9 C 0.008 3.992 10 N -0.900 5.900 11 Si 0.897 3.103 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.276 1.276 15 C 0.172 3.828 16 C -0.009 4.009 17 C -0.126 4.126 18 C -0.067 4.067 19 C -0.168 4.168 20 C 0.137 3.863 21 F -0.135 7.135 22 C -0.042 4.042 23 C 0.260 3.740 24 N -0.403 5.403 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.054 0.946 30 H 0.259 0.741 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -4.980 12.629 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.298 6.298 3 C 0.306 3.694 4 O -0.395 6.395 5 C 0.056 3.944 6 N -0.275 5.275 7 C -0.389 4.389 8 H 0.109 0.891 9 C -0.190 4.190 10 N -0.545 5.545 11 Si 0.727 3.273 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.201 1.201 15 C 0.044 3.956 16 C -0.015 4.015 17 C -0.145 4.145 18 C -0.086 4.086 19 C -0.187 4.187 20 C 0.116 3.884 21 F -0.113 7.113 22 C -0.047 4.047 23 C -0.055 4.055 24 N -0.079 5.079 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.347 -3.391 11.279 12.934 hybrid contribution 0.254 0.055 -0.988 1.021 sum 5.600 -3.336 10.291 12.182 Atomic orbital electron populations 1.22859 0.79812 1.01348 1.01246 1.86545 1.20961 1.36658 1.85679 1.25530 0.93480 0.80200 0.70172 1.90477 1.66736 1.36538 1.45728 1.20640 0.85436 0.86241 1.02105 1.44013 1.74570 1.07952 1.00991 1.19556 1.36961 0.99899 0.82456 0.89144 1.24683 0.97568 0.98834 0.97889 1.69879 1.29370 1.28777 1.26500 0.86312 0.79516 0.78747 0.82759 1.21104 1.21694 1.20097 1.19910 0.88235 0.98296 0.89141 1.21162 0.98193 0.91228 0.90957 1.21069 0.96876 0.98085 0.98469 1.21148 0.92171 0.97472 0.97773 1.20927 1.01208 0.96403 1.00154 1.17674 0.83638 0.90877 0.96252 1.91513 1.60982 1.71147 1.87654 1.15905 0.92477 0.96542 0.99775 1.25107 0.94139 0.92889 0.93399 1.81187 1.06550 1.11624 1.08499 0.93627 0.92886 0.90099 0.85989 0.92800 0.93048 0.91792 0.91636 0.84657 0.84715 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.38 -7.93 10.57 -39.28 -0.41 -8.34 16 3 C 0.47 10.88 6.13 36.00 0.22 11.10 16 4 O -0.51 -13.59 16.05 -18.75 -0.30 -13.89 16 5 C 0.18 4.02 5.55 -5.20 -0.03 3.99 16 6 N -0.56 -12.77 2.00 -175.99 -0.35 -13.12 16 7 C -0.26 -6.89 9.21 -15.06 -0.14 -7.03 16 8 H 0.09 2.44 5.26 -52.48 -0.28 2.17 16 9 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 10 N -0.90 -24.97 9.07 55.49 0.50 -24.47 16 11 Si 0.90 22.33 29.62 -169.99 -5.04 17.29 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.17 3.21 5.38 -5.20 -0.03 3.18 16 16 C -0.01 -0.14 5.50 -104.21 -0.57 -0.72 16 17 C -0.13 -1.48 9.66 -39.64 -0.38 -1.86 16 18 C -0.07 -0.64 10.03 -39.51 -0.40 -1.04 16 19 C -0.17 -1.79 10.01 -39.57 -0.40 -2.19 16 20 C 0.14 1.94 7.28 -38.96 -0.28 1.65 16 21 F -0.13 -2.01 16.81 2.25 0.04 -1.98 16 22 C -0.04 -0.69 5.74 -106.82 -0.61 -1.31 16 23 C 0.26 5.13 11.82 -22.45 -0.27 4.86 16 24 N -0.40 -8.84 17.38 41.86 0.73 -8.12 16 25 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16 26 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.12 2.93 6.11 -51.93 -0.32 2.61 16 29 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 32 H 0.07 1.32 7.17 -51.93 -0.37 0.95 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -32.75 316.12 -5.45 -38.20 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -3.47 Total: -2.91 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -1.90 Total: 12.57 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.88 Total: -45.71 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.72 Total: -22.24 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.04 Total: 17.29 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.75 -5.45 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428241964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.264 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds