Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34237 * 116.99698 * 2 1 4 4 O 1.20820 * 119.99802 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99967 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47002 * 180.02562 * 5 3 2 7 7 C 1.36942 * 119.99460 * 269.99776 * 6 5 3 8 8 H 1.08006 * 119.99311 * 185.80240 * 7 6 5 9 9 C 1.38805 * 120.00358 * 5.79998 * 7 6 5 10 10 N 1.31624 * 120.00055 * 25.44111 * 9 7 6 11 11 Si 1.86801 * 120.00138 * 205.44039 * 9 7 6 12 12 H 1.48507 * 109.46858 * 90.00080 * 11 9 7 13 13 H 1.48502 * 109.47470 * 209.99859 * 11 9 7 14 14 H 1.48500 * 109.47467 * 330.00311 * 11 9 7 15 15 C 1.46496 * 120.00351 * 90.00076 * 6 5 3 16 16 C 1.50697 * 109.47522 * 88.53702 * 15 6 5 17 17 C 1.37921 * 120.06124 * 265.23448 * 16 15 6 18 18 C 1.38401 * 120.21190 * 180.25153 * 17 16 15 19 19 C 1.38271 * 120.35244 * 359.78987 * 18 17 16 20 20 C 1.38239 * 120.12047 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.11125 * 179.97438 * 20 19 18 22 22 C 1.39646 * 120.06562 * 85.02057 * 16 15 6 23 23 C 1.43194 * 120.17214 * 0.02562 * 22 16 15 24 24 N 7.50402 * 127.77767 * 356.08164 * 2 1 3 25 25 H 1.08997 * 109.47072 * 299.99652 * 1 2 3 26 26 H 1.09000 * 109.47088 * 60.00427 * 1 2 3 27 27 H 1.08997 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47529 * 59.99687 * 5 3 2 29 29 H 1.09000 * 109.47255 * 299.99782 * 5 3 2 30 30 H 0.97001 * 120.00239 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47045 * 328.53301 * 15 6 5 32 32 H 1.09006 * 109.47086 * 208.53721 * 15 6 5 33 33 H 1.07997 * 119.89199 * 0.02562 * 17 16 15 34 34 H 1.08008 * 119.82104 * 179.76523 * 18 17 16 35 35 H 1.08001 * 119.94066 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1751 3.3372 -1.1855 8 1 4.5708 4.3422 -1.1874 9 6 3.8630 2.7119 -2.3848 10 7 2.9582 1.7564 -2.4128 11 14 4.7269 3.2265 -3.9590 12 1 5.9544 2.4104 -4.1395 13 1 3.8179 3.0155 -5.1143 14 1 5.0953 4.6626 -3.8749 15 6 4.1898 3.3816 1.2692 16 6 5.6143 3.1895 1.7217 17 6 5.9284 2.1769 2.6039 18 6 7.2348 2.0009 3.0255 19 6 8.2364 2.8347 2.5635 20 6 7.9383 3.8511 1.6753 21 9 8.9170 4.6660 1.2244 22 6 6.6196 4.0336 1.2451 23 6 6.3013 5.0844 0.3259 24 7 6.0490 5.9173 -0.4053 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.9557 0.7811 -0.8907 29 1 3.9564 0.7808 0.8892 30 1 2.7397 1.3196 -3.2509 31 1 3.5120 2.9795 2.0221 32 1 3.9920 4.4449 1.1331 33 1 5.1518 1.5216 2.9696 34 1 7.4731 1.2083 3.7194 35 1 9.2536 2.6917 2.8973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428241964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -57.814671 kcal Electronic energy + Delta-G solvation = -23377.639128 eV Core-core repulsion = 19677.256824 eV Total energy + Delta-G solvation = -3700.382303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.98985 -40.86489 -40.31568 -37.73141 -37.41389 -36.43771 -33.98875 -32.29062 -31.61344 -29.85361 -27.71211 -27.62927 -24.86303 -24.09685 -22.47121 -21.55191 -19.84140 -18.96874 -18.13949 -17.96423 -17.55454 -17.26310 -16.84043 -16.74832 -16.54910 -15.85988 -15.65565 -15.26133 -15.01303 -14.59357 -14.51149 -14.21872 -13.93602 -13.87361 -13.84348 -13.40955 -13.09003 -12.85614 -12.75867 -12.68925 -12.54193 -12.31256 -12.18421 -12.02209 -11.85437 -11.36070 -11.09214 -10.53835 -9.87331 -9.62848 -9.14160 -8.05610 -5.28899 -0.22938 0.27355 1.32964 1.37056 1.45021 1.66555 1.99865 2.01465 2.30524 2.50473 2.78045 2.95502 3.11162 3.19519 3.60360 3.81421 4.01621 4.31590 4.37329 4.42875 4.48964 4.51039 4.55807 4.70144 4.77266 4.87097 5.00328 5.09283 5.18862 5.27017 5.42876 5.53737 5.62493 5.93207 5.97441 6.13508 6.50566 6.97478 7.49446 7.72952 8.03739 9.02852 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.006706 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.756072 B = 4174.199462 C = 5498.344570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.382 6.382 3 C 0.467 3.533 4 O -0.553 6.553 5 C 0.186 3.814 6 N -0.571 5.571 7 C -0.252 4.252 8 H 0.076 0.924 9 C -0.036 4.036 10 N -0.918 5.918 11 Si 0.937 3.063 12 H -0.276 1.276 13 H -0.294 1.294 14 H -0.294 1.294 15 C 0.173 3.827 16 C -0.022 4.022 17 C -0.116 4.116 18 C -0.039 4.039 19 C -0.148 4.148 20 C 0.125 3.875 21 F -0.146 7.146 22 C -0.077 4.077 23 C 0.274 3.726 24 N -0.466 5.466 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.252 0.748 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -7.928 15.789 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.298 6.298 3 C 0.310 3.690 4 O -0.441 6.441 5 C 0.057 3.943 6 N -0.290 5.290 7 C -0.382 4.382 8 H 0.094 0.906 9 C -0.231 4.231 10 N -0.565 5.565 11 Si 0.767 3.233 12 H -0.202 1.202 13 H -0.221 1.221 14 H -0.220 1.220 15 C 0.047 3.953 16 C -0.027 4.027 17 C -0.135 4.135 18 C -0.057 4.057 19 C -0.167 4.167 20 C 0.103 3.897 21 F -0.124 7.124 22 C -0.082 4.082 23 C -0.040 4.040 24 N -0.142 5.142 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.144 0.856 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.182 0.818 34 H 0.205 0.795 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.900 -6.353 14.475 17.248 hybrid contribution -0.197 0.931 -1.769 2.009 sum 6.703 -5.422 12.706 15.355 Atomic orbital electron populations 1.23152 0.77697 1.04139 1.00600 1.86507 1.23011 1.35246 1.85064 1.25849 0.94181 0.80124 0.68865 1.90457 1.67784 1.38025 1.47861 1.20684 0.84531 0.85774 1.03282 1.44137 1.75093 1.08513 1.01272 1.19627 1.34998 0.99390 0.84169 0.90601 1.25076 0.98753 0.99884 0.99410 1.69988 1.30569 1.29869 1.26063 0.85712 0.79087 0.77291 0.81166 1.20220 1.22095 1.22031 1.19948 0.91058 0.96308 0.88000 1.20752 0.95487 0.93149 0.93307 1.21416 0.98962 0.96463 0.96636 1.21723 0.90396 0.97174 0.96400 1.21435 1.03438 0.94166 0.97630 1.17959 0.82406 0.91991 0.97362 1.91488 1.61114 1.71791 1.88028 1.16176 0.94345 0.96881 1.00799 1.25917 0.92591 0.92689 0.92830 1.81158 1.08447 1.13813 1.10810 0.92731 0.95144 0.85569 0.88255 0.87770 0.93854 0.89671 0.94666 0.81795 0.79499 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.38 -15.29 10.57 -51.48 -0.54 -15.83 16 3 C 0.47 21.52 6.13 71.23 0.44 21.96 16 4 O -0.55 -29.77 16.05 21.98 0.35 -29.41 16 5 C 0.19 7.85 5.55 85.63 0.47 8.33 16 6 N -0.57 -26.17 2.00 -710.71 -1.42 -27.60 16 7 C -0.25 -13.72 9.21 84.03 0.77 -12.94 16 8 H 0.08 4.31 5.26 -2.91 -0.02 4.30 16 9 C -0.04 -2.01 4.93 84.86 0.42 -1.60 16 10 N -0.92 -52.03 9.07 21.65 0.20 -51.84 16 11 Si 0.94 47.48 29.62 68.60 2.03 49.51 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 14 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 15 C 0.17 6.38 5.38 85.63 0.46 6.84 16 16 C -0.02 -0.62 5.50 -19.60 -0.11 -0.73 16 17 C -0.12 -2.12 9.66 22.23 0.21 -1.90 16 18 C -0.04 -0.47 10.03 22.32 0.22 -0.25 16 19 C -0.15 -2.36 10.01 22.28 0.22 -2.14 16 20 C 0.12 3.24 7.28 22.67 0.17 3.40 16 21 F -0.15 -4.22 16.81 44.97 0.76 -3.47 16 22 C -0.08 -2.50 5.74 -21.29 -0.12 -2.62 16 23 C 0.27 11.29 11.82 88.32 1.04 12.33 16 24 N -0.47 -21.79 17.38 19.01 0.33 -21.46 16 25 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 26 H 0.03 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.10 4.73 6.11 -2.39 -0.01 4.72 16 29 H 0.10 3.27 8.07 -2.39 -0.02 3.25 16 30 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 31 H 0.09 2.71 8.00 -2.39 -0.02 2.69 16 32 H 0.03 1.48 7.17 -2.38 -0.02 1.47 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -77.32 316.12 8.24 -69.09 By element: Atomic # 1 Polarization: -3.25 SS G_CDS: 1.14 Total: -2.12 kcal Atomic # 6 Polarization: 27.73 SS G_CDS: 5.40 Total: 33.13 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -0.90 Total: -100.90 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.19 Total: -45.24 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.76 Total: -3.47 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -77.32 8.24 -69.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428241964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.271 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds