Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76201 * 102.99810 * 2 1 4 4 C 1.39196 * 119.64869 * 180.29664 * 3 2 1 5 5 C 1.39464 * 118.92350 * 180.24428 * 4 3 2 6 6 C 1.48166 * 120.87523 * 179.73297 * 5 4 3 7 7 O 1.21513 * 119.99747 * 4.84935 * 6 5 4 8 8 N 1.34770 * 119.99714 * 184.84717 * 6 5 4 9 9 C 1.46502 * 119.99844 * 185.06951 * 8 6 5 10 10 C 1.53000 * 109.47360 * 184.99844 * 9 8 6 11 11 C 1.50700 * 115.55250 * 54.23153 * 10 9 8 12 12 H 1.08002 * 119.99590 * 215.59985 * 11 10 9 13 13 C 1.37875 * 119.99555 * 35.32293 * 11 10 9 14 14 N 1.31512 * 120.00578 * 355.78147 * 13 11 10 15 15 Si 1.86804 * 119.99592 * 175.77992 * 13 11 10 16 16 H 1.48504 * 109.47087 * 59.99918 * 15 13 11 17 17 H 1.48499 * 109.47107 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47336 * 300.00211 * 15 13 11 19 19 C 1.52999 * 117.49814 * 199.91098 * 10 9 8 20 20 C 1.53009 * 117.49315 * 268.56644 * 10 9 8 21 21 C 1.40046 * 118.24428 * 359.46573 * 5 4 3 22 22 C 1.37941 * 119.18883 * 0.26745 * 21 5 4 23 23 N 1.31918 * 121.00759 * 0.02562 * 22 21 5 24 24 H 1.09003 * 109.46782 * 60.00676 * 1 2 3 25 25 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47211 * 300.00568 * 1 2 3 27 27 H 1.07995 * 120.53460 * 359.97438 * 4 3 2 28 28 H 0.96998 * 120.00222 * 5.06126 * 8 6 5 29 29 H 1.08994 * 109.47887 * 64.99009 * 9 8 6 30 30 H 1.09006 * 109.46412 * 304.98929 * 9 8 6 31 31 H 0.96992 * 120.00043 * 184.99955 * 14 13 11 32 32 H 1.09001 * 117.49701 * 214.99801 * 19 10 9 33 33 H 1.09000 * 117.49753 * 0.02562 * 19 10 9 34 34 H 1.08996 * 117.49978 * 359.97438 * 20 10 9 35 35 H 1.08999 * 117.49868 * 144.97264 * 20 10 9 36 36 H 1.07997 * 120.40471 * 180.29510 * 21 5 4 37 37 H 1.08001 * 119.50255 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5439 2.1157 -0.0063 5 6 3.8404 3.4785 -0.0010 6 6 5.2446 3.9511 -0.0014 7 8 6.1547 3.1514 -0.0953 8 7 5.5124 5.2678 0.1024 9 6 6.8928 5.7456 -0.0094 10 6 6.9359 7.2498 0.2669 11 6 6.3246 7.6886 1.5726 12 1 5.7945 8.6277 1.6320 13 6 6.4373 6.8885 2.6898 14 7 7.0051 5.7059 2.5973 15 14 5.7834 7.4844 4.3351 16 1 4.3252 7.7424 4.2241 17 1 6.0246 6.4461 5.3690 18 1 6.4799 8.7381 4.7199 19 6 8.1527 8.0266 -0.2399 20 6 6.7966 8.1922 -0.9304 21 6 2.7758 4.3883 -0.0010 22 6 1.4820 3.9099 -0.0006 23 7 1.2367 2.6138 0.0003 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.3361 1.3817 -0.0107 28 1 4.7912 5.8992 0.2510 29 1 7.2647 5.5501 -1.0151 30 1 7.5174 5.2248 0.7165 31 1 7.0198 5.1135 3.3651 32 1 8.5112 8.8550 0.3711 33 1 8.9223 7.4661 -0.7706 34 1 6.6748 7.7406 -1.9149 35 1 6.2626 9.1294 -0.7738 36 1 2.9654 5.4515 -0.0018 37 1 0.6571 4.6071 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431179861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = 23.480415 kcal Electronic energy + Delta-G solvation = -20644.892257 eV Core-core repulsion = 17514.248349 eV Total energy + Delta-G solvation = -3130.643908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22889 -38.46223 -36.70822 -33.37581 -32.46913 -32.17637 -31.21880 -29.02971 -26.48613 -25.55344 -24.06684 -23.31868 -21.33088 -20.22875 -19.37580 -18.15181 -16.65543 -16.60480 -16.00962 -15.30746 -14.94555 -14.88215 -14.61965 -14.50591 -14.02168 -13.90825 -13.70183 -13.37271 -13.04606 -12.88670 -12.43340 -11.87260 -11.74632 -11.51870 -11.10724 -10.81561 -10.62216 -10.57929 -10.31946 -9.98013 -9.97349 -9.76034 -9.68107 -9.22943 -9.03660 -8.91671 -8.35994 -7.96964 -7.64281 -6.05281 -4.26236 0.83078 1.03575 1.36371 2.15484 3.18446 3.27223 3.27460 3.28820 3.82558 4.07402 4.24796 4.52058 4.83695 4.97633 4.98104 5.05135 5.10046 5.12898 5.27758 5.41651 5.61817 5.69978 5.90317 5.95738 6.17243 6.23810 6.44971 6.50539 6.54469 6.62998 6.83040 7.01396 7.19459 7.46178 7.54788 7.65368 7.90189 8.23357 8.41005 8.75011 8.99386 9.38003 10.83760 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.004235 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.242187 B = 6609.767334 C = 7129.455273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.079 6.079 3 C 0.110 3.890 4 C -0.096 4.096 5 C -0.054 4.054 6 C 0.545 3.455 7 O -0.546 6.546 8 N -0.667 5.667 9 C 0.163 3.837 10 C 0.035 3.965 11 C -0.501 4.501 12 H 0.061 0.939 13 C 0.075 3.925 14 N -0.866 5.866 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.198 4.198 20 C -0.213 4.213 21 C -0.146 4.146 22 C 0.108 3.892 23 N -0.485 5.485 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.150 0.850 28 H 0.398 0.602 29 H 0.021 0.979 30 H 0.121 0.879 31 H 0.265 0.735 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.145 0.855 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 -6.053 -5.072 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.160 5.840 3 C -0.138 4.138 4 C -0.123 4.123 5 C -0.067 4.067 6 C 0.329 3.671 7 O -0.425 6.425 8 N -0.313 5.313 9 C 0.040 3.960 10 C 0.035 3.965 11 C -0.538 4.538 12 H 0.079 0.921 13 C -0.130 4.130 14 N -0.502 5.502 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.236 4.236 20 C -0.250 4.250 21 C -0.170 4.170 22 C -0.052 4.052 23 N -0.199 5.199 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.168 0.832 28 H 0.233 0.767 29 H 0.039 0.961 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.085 -8.066 -5.008 14.595 hybrid contribution -0.651 2.239 1.016 2.543 sum -11.735 -5.827 -3.992 13.697 Atomic orbital electron populations 1.23428 0.93955 1.05863 1.06634 1.85575 1.07463 0.99036 1.91971 1.22885 0.91773 0.98306 1.00829 1.21766 0.95801 0.96125 0.98579 1.20620 0.95034 0.93549 0.97455 1.17904 0.86891 0.83513 0.78827 1.90716 1.46138 1.54368 1.51311 1.45540 1.11402 1.05754 1.68651 1.21169 0.82148 0.94457 0.98226 1.19224 0.96461 0.88783 0.92060 1.20464 1.35599 1.05934 0.91806 0.92081 1.25000 0.94281 0.94852 0.98829 1.69822 1.41991 1.07592 1.30756 0.86633 0.79250 0.78643 0.83385 1.20214 1.21183 1.20075 1.22944 0.91086 1.04713 1.04875 1.22969 1.01888 1.02951 0.97179 1.22397 0.93160 1.01322 1.00087 1.22605 0.96041 0.91234 0.95269 1.67832 1.35032 1.02973 1.14025 0.89547 0.88061 0.89514 0.83204 0.76695 0.96054 0.86186 0.92471 0.90156 0.91407 0.91316 0.90562 0.83688 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 10.01 101.05 1.01 -0.16 16 2 S -0.08 -0.96 22.55 -107.50 -2.42 -3.38 16 3 C 0.11 1.63 7.00 -16.96 -0.12 1.51 16 4 C -0.10 -1.58 9.41 -38.77 -0.36 -1.94 16 5 C -0.05 -0.93 5.90 -104.69 -0.62 -1.54 16 6 C 0.54 11.31 7.78 -12.19 -0.09 11.21 16 7 O -0.55 -13.09 16.43 5.35 0.09 -13.00 16 8 N -0.67 -13.82 4.97 -61.15 -0.30 -14.12 16 9 C 0.16 3.72 4.62 -4.04 -0.02 3.70 16 10 C 0.04 0.80 2.04 -155.66 -0.32 0.49 16 11 C -0.50 -12.29 8.43 -34.44 -0.29 -12.58 16 12 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 13 C 0.08 1.88 5.31 -17.82 -0.09 1.79 16 14 N -0.87 -22.70 10.11 55.43 0.56 -22.14 16 15 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.20 -4.17 9.96 -26.69 -0.27 -4.44 16 20 C -0.21 -4.22 9.92 -26.69 -0.26 -4.48 16 21 C -0.15 -2.08 9.59 -39.01 -0.37 -2.45 16 22 C 0.11 1.38 11.16 -17.62 -0.20 1.18 16 23 N -0.48 -6.83 9.40 -12.16 -0.11 -6.94 16 24 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.15 2.48 7.74 -52.49 -0.41 2.07 16 28 H 0.40 7.64 6.32 -40.82 -0.26 7.38 16 29 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.12 3.17 5.89 -51.93 -0.31 2.87 16 31 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 32 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.15 1.82 6.60 -52.49 -0.35 1.47 16 37 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -28.41 331.29 -8.89 -37.30 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.66 Total: 10.22 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.01 Total: -7.72 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.14 Total: -43.21 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.42 Total: -3.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.41 -8.89 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431179861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.781 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds