Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76201 * 102.99810 * 2 1 4 4 C 1.39196 * 119.64869 * 180.29664 * 3 2 1 5 5 C 1.39464 * 118.92350 * 180.24428 * 4 3 2 6 6 C 1.48166 * 120.87523 * 179.73297 * 5 4 3 7 7 O 1.21513 * 119.99747 * 4.84935 * 6 5 4 8 8 N 1.34770 * 119.99714 * 184.84717 * 6 5 4 9 9 C 1.46502 * 119.99844 * 185.06951 * 8 6 5 10 10 C 1.53000 * 109.47360 * 184.99844 * 9 8 6 11 11 C 1.50700 * 115.55250 * 54.23153 * 10 9 8 12 12 H 1.08002 * 119.99590 * 215.59985 * 11 10 9 13 13 C 1.37875 * 119.99555 * 35.32293 * 11 10 9 14 14 N 1.31512 * 120.00578 * 355.78147 * 13 11 10 15 15 Si 1.86804 * 119.99592 * 175.77992 * 13 11 10 16 16 H 1.48504 * 109.47087 * 59.99918 * 15 13 11 17 17 H 1.48499 * 109.47107 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47336 * 300.00211 * 15 13 11 19 19 C 1.52999 * 117.49814 * 199.91098 * 10 9 8 20 20 C 1.53009 * 117.49315 * 268.56644 * 10 9 8 21 21 C 1.40046 * 118.24428 * 359.46573 * 5 4 3 22 22 C 1.37941 * 119.18883 * 0.26745 * 21 5 4 23 23 N 1.31918 * 121.00759 * 0.02562 * 22 21 5 24 24 H 1.09003 * 109.46782 * 60.00676 * 1 2 3 25 25 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47211 * 300.00568 * 1 2 3 27 27 H 1.07995 * 120.53460 * 359.97438 * 4 3 2 28 28 H 0.96998 * 120.00222 * 5.06126 * 8 6 5 29 29 H 1.08994 * 109.47887 * 64.99009 * 9 8 6 30 30 H 1.09006 * 109.46412 * 304.98929 * 9 8 6 31 31 H 0.96992 * 120.00043 * 184.99955 * 14 13 11 32 32 H 1.09001 * 117.49701 * 214.99801 * 19 10 9 33 33 H 1.09000 * 117.49753 * 0.02562 * 19 10 9 34 34 H 1.08996 * 117.49978 * 359.97438 * 20 10 9 35 35 H 1.08999 * 117.49868 * 144.97264 * 20 10 9 36 36 H 1.07997 * 120.40471 * 180.29510 * 21 5 4 37 37 H 1.08001 * 119.50255 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5439 2.1157 -0.0063 5 6 3.8404 3.4785 -0.0010 6 6 5.2446 3.9511 -0.0014 7 8 6.1547 3.1514 -0.0953 8 7 5.5124 5.2678 0.1024 9 6 6.8928 5.7456 -0.0094 10 6 6.9359 7.2498 0.2669 11 6 6.3246 7.6886 1.5726 12 1 5.7945 8.6277 1.6320 13 6 6.4373 6.8885 2.6898 14 7 7.0051 5.7059 2.5973 15 14 5.7834 7.4844 4.3351 16 1 4.3252 7.7424 4.2241 17 1 6.0246 6.4461 5.3690 18 1 6.4799 8.7381 4.7199 19 6 8.1527 8.0266 -0.2399 20 6 6.7966 8.1922 -0.9304 21 6 2.7758 4.3883 -0.0010 22 6 1.4820 3.9099 -0.0006 23 7 1.2367 2.6138 0.0003 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.3361 1.3817 -0.0107 28 1 4.7912 5.8992 0.2510 29 1 7.2647 5.5501 -1.0151 30 1 7.5174 5.2248 0.7165 31 1 7.0198 5.1135 3.3651 32 1 8.5112 8.8550 0.3711 33 1 8.9223 7.4661 -0.7706 34 1 6.6748 7.7406 -1.9149 35 1 6.2626 9.1294 -0.7738 36 1 2.9654 5.4515 -0.0018 37 1 0.6571 4.6071 -0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431179861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = 7.173102 kcal Electronic energy + Delta-G solvation = -20645.599395 eV Core-core repulsion = 17514.248349 eV Total energy + Delta-G solvation = -3131.351046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50581 -39.99944 -38.43059 -35.03056 -34.17556 -33.63815 -32.36262 -29.77050 -28.14967 -27.40610 -25.37571 -24.51228 -22.97080 -21.69854 -21.15402 -19.61985 -18.19975 -17.85911 -17.30807 -16.76738 -16.64526 -16.32556 -16.10017 -15.79098 -15.36546 -15.21908 -14.87572 -14.71823 -14.29712 -14.17712 -13.62143 -13.52677 -13.37760 -12.88299 -12.86066 -12.61379 -12.31928 -12.03046 -11.61575 -11.51962 -11.25899 -11.14855 -10.91011 -10.86540 -10.72512 -10.61189 -10.16387 -9.72087 -8.62876 -7.94533 -6.20807 -0.40822 -0.11118 0.37441 1.31026 1.42243 1.46572 1.51967 1.88797 2.30323 2.41278 2.72693 3.05528 3.50319 3.59819 3.71658 3.87528 3.91582 4.06690 4.28457 4.35866 4.39257 4.53596 4.56931 4.68012 4.75189 4.80429 4.94172 4.97923 4.98915 5.14167 5.30594 5.39415 5.53559 5.60459 5.78752 5.98142 6.36358 6.55141 6.72676 6.88668 7.37443 7.45324 8.90737 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019450 B = 0.004235 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.242187 B = 6609.767334 C = 7129.455273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.090 6.090 3 C 0.106 3.894 4 C -0.114 4.114 5 C -0.074 4.074 6 C 0.542 3.458 7 O -0.589 6.589 8 N -0.662 5.662 9 C 0.173 3.827 10 C 0.007 3.993 11 C -0.504 4.504 12 H 0.062 0.938 13 C 0.036 3.964 14 N -0.891 5.891 15 Si 0.945 3.055 16 H -0.264 1.264 17 H -0.297 1.297 18 H -0.275 1.275 19 C -0.201 4.201 20 C -0.183 4.183 21 C -0.143 4.143 22 C 0.119 3.881 23 N -0.484 5.484 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.406 0.594 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.255 0.745 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.163 0.837 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 -5.085 -5.515 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.149 5.851 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.086 4.086 6 C 0.328 3.672 7 O -0.471 6.471 8 N -0.308 5.308 9 C 0.049 3.951 10 C 0.006 3.994 11 C -0.541 4.541 12 H 0.080 0.920 13 C -0.165 4.165 14 N -0.528 5.528 15 Si 0.772 3.228 16 H -0.189 1.189 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.240 4.240 20 C -0.220 4.220 21 C -0.166 4.166 22 C -0.040 4.040 23 N -0.198 5.198 24 H 0.108 0.892 25 H 0.147 0.853 26 H 0.106 0.894 27 H 0.154 0.846 28 H 0.242 0.758 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.180 0.820 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.871 -7.075 -5.460 16.501 hybrid contribution 0.164 1.924 1.115 2.230 sum -13.707 -5.150 -4.345 15.274 Atomic orbital electron populations 1.23545 0.90817 1.07740 1.06790 1.85661 1.10814 0.97205 1.91429 1.23106 0.91158 0.99833 1.00102 1.21726 0.96573 0.95715 1.00031 1.20368 0.93595 0.94569 1.00099 1.18451 0.88224 0.83037 0.77510 1.90677 1.47974 1.55302 1.53186 1.45424 1.10817 1.06039 1.68514 1.20838 0.82779 0.94514 0.96946 1.19251 0.98280 0.88896 0.92958 1.20691 1.35111 1.05691 0.92604 0.91972 1.25573 0.94758 0.94870 1.01323 1.70035 1.43548 1.08490 1.30691 0.85812 0.79359 0.77612 0.80060 1.18897 1.22335 1.20070 1.22969 0.91655 1.04267 1.05061 1.22969 1.00203 1.02186 0.96670 1.22598 0.92947 1.01645 0.99413 1.23293 0.96509 0.91389 0.92825 1.67969 1.34490 1.03479 1.13818 0.89180 0.85301 0.89431 0.84635 0.75770 0.95991 0.90009 0.93511 0.90460 0.90653 0.89556 0.89477 0.82000 0.77671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 10.01 113.37 1.14 -0.71 16 2 S -0.09 -2.08 22.55 -56.49 -1.27 -3.35 16 3 C 0.11 3.03 7.00 84.84 0.59 3.63 16 4 C -0.11 -3.81 9.41 22.80 0.21 -3.59 16 5 C -0.07 -2.56 5.90 -19.91 -0.12 -2.68 16 6 C 0.54 23.21 7.78 86.88 0.68 23.89 16 7 O -0.59 -29.77 16.43 -3.76 -0.06 -29.83 16 8 N -0.66 -27.72 4.97 -465.67 -2.32 -30.04 16 9 C 0.17 8.06 4.62 86.38 0.40 8.46 16 10 C 0.01 0.31 2.04 -52.93 -0.11 0.20 16 11 C -0.50 -24.35 8.43 25.60 0.22 -24.14 16 12 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 13 C 0.04 1.82 5.31 84.65 0.45 2.27 16 14 N -0.89 -47.91 10.11 21.45 0.22 -47.69 16 15 Si 0.94 40.46 29.54 68.60 2.03 42.49 16 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.30 -13.15 7.11 99.48 0.71 -12.45 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.20 -8.27 9.96 30.62 0.30 -7.96 16 20 C -0.18 -6.85 9.92 30.62 0.30 -6.55 16 21 C -0.14 -3.80 9.59 22.64 0.22 -3.58 16 22 C 0.12 2.67 11.16 84.61 0.94 3.61 16 23 N -0.48 -12.46 9.40 -192.37 -1.81 -14.27 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.14 4.81 7.74 -2.91 -0.02 4.79 16 28 H 0.41 15.37 6.32 -92.71 -0.59 14.78 16 29 H 0.02 1.00 8.09 -2.39 -0.02 0.98 16 30 H 0.08 4.51 5.89 -2.38 -0.01 4.50 16 31 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 32 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.16 3.67 6.60 -2.91 -0.02 3.65 16 37 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -62.41 331.29 2.52 -59.89 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.51 Total: 29.97 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.23 Total: -7.16 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -3.91 Total: -92.00 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.06 Total: -29.83 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -1.27 Total: -3.35 kcal Total: -62.41 2.52 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431179861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.061 kcal (2) G-P(sol) polarization free energy of solvation -62.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds