Wall clock time and date at job start Tue Mar 31 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35901 * 117.00281 * 2 1 4 4 C 1.38764 * 120.03749 * 0.02562 * 3 2 1 5 5 C 1.38143 * 119.99204 * 179.70514 * 4 3 2 6 6 C 1.38251 * 120.07646 * 0.52923 * 5 4 3 7 7 C 1.50704 * 119.95675 * 179.77333 * 6 5 4 8 8 C 1.50703 * 109.46675 * 264.72196 * 7 6 5 9 9 O 1.21287 * 119.99957 * 359.72570 * 8 7 6 10 10 N 1.34774 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99836 * 179.97438 * 10 8 7 12 12 H 1.07996 * 119.99955 * 18.13194 * 11 10 8 13 13 C 1.38957 * 119.99793 * 198.12777 * 11 10 8 14 14 N 1.31405 * 120.00092 * 18.73174 * 13 11 10 15 15 Si 1.86804 * 119.99703 * 198.73254 * 13 11 10 16 16 H 1.48497 * 109.46922 * 85.58638 * 15 13 11 17 17 H 1.48490 * 109.46843 * 205.58906 * 15 13 11 18 18 H 1.48498 * 109.47030 * 325.58680 * 15 13 11 19 19 C 1.46501 * 120.00117 * 0.02562 * 10 8 7 20 20 C 1.47197 * 109.47172 * 84.19629 * 19 10 8 21 21 N 9.12804 * 132.22109 * 4.12568 * 2 1 3 22 22 C 1.38471 * 120.08608 * 359.48814 * 6 5 4 23 23 F 1.35107 * 119.99674 * 180.25202 * 22 6 5 24 24 C 1.38394 * 120.00643 * 0.23841 * 22 6 5 25 25 H 1.09006 * 109.47147 * 59.99952 * 1 2 3 26 26 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47196 * 300.00216 * 1 2 3 28 28 H 1.07998 * 120.01058 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96415 * 180.30227 * 5 4 3 30 30 H 1.08989 * 109.47217 * 144.72116 * 7 6 5 31 31 H 1.09000 * 109.46940 * 24.72252 * 7 6 5 32 32 H 0.97000 * 119.99655 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.47051 * 204.19868 * 19 10 8 34 34 H 1.09001 * 109.46993 * 324.19977 * 19 10 8 35 35 H 1.07993 * 120.03678 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0067 6 6 3.2998 3.6786 0.0013 7 6 3.9822 5.0222 0.0028 8 6 4.3204 5.4154 -1.4121 9 8 4.0397 4.6750 -2.3308 10 7 4.9392 6.5876 -1.6562 11 6 5.2473 6.9450 -2.9434 12 1 4.7542 6.4582 -3.7718 13 6 6.1940 7.9338 -3.1822 14 7 7.0489 8.2660 -2.2411 15 14 6.2514 8.7908 -4.8410 16 1 5.2923 9.9245 -4.8458 17 1 7.6236 9.3022 -5.0867 18 1 5.8837 7.8269 -5.9091 19 6 5.2836 7.4792 -0.5460 20 6 6.5701 7.0636 0.0362 21 7 7.5629 6.7423 0.4863 22 6 4.0563 2.5188 0.0004 23 9 5.4053 2.5923 0.0002 24 6 3.4306 1.2844 -0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2125 2.3196 0.0005 29 1 1.3312 4.5113 0.0120 30 1 4.8971 4.9644 0.5924 31 1 3.3162 5.7675 0.4378 32 1 7.7094 8.9564 -2.4077 33 1 5.3645 8.5023 -0.9133 34 1 4.5062 7.4272 0.2163 35 1 4.0202 0.3795 -0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436298416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:38 Heat of formation + Delta-G solvation = -49.574932 kcal Electronic energy + Delta-G solvation = -22833.970290 eV Core-core repulsion = 19133.945288 eV Total energy + Delta-G solvation = -3700.025002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.59389 -40.09528 -38.91533 -37.24849 -35.70878 -34.30911 -32.27090 -31.59667 -30.56590 -28.08341 -27.44524 -26.58677 -24.43439 -22.76018 -21.55622 -19.21350 -18.39650 -17.90610 -16.90840 -16.54793 -16.25041 -15.88784 -15.84871 -15.30657 -15.11459 -14.65052 -14.55405 -14.04213 -13.83938 -13.49904 -12.97287 -12.78228 -12.73207 -12.47098 -12.30342 -12.03678 -11.71068 -11.57823 -11.35545 -11.28255 -11.08743 -10.89364 -10.85324 -10.53507 -10.40010 -10.28749 -9.25653 -8.74525 -8.65284 -8.04086 -8.00765 -6.48142 -3.99921 1.29756 1.40282 3.08720 3.11202 3.22609 3.26455 3.54623 3.68029 3.82682 4.00682 4.14433 4.58920 4.73141 4.81742 4.89957 4.95042 4.98635 5.01854 5.03135 5.22769 5.27889 5.37745 5.45954 5.66280 5.74966 5.91273 6.07919 6.12393 6.18277 6.31899 6.53179 6.56159 6.81308 7.31051 7.48037 7.90580 8.29251 8.77071 9.01093 9.20064 9.74114 10.57663 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.004215 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.253067 B = 6641.898791 C = 7192.232212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.145 3.855 4 C -0.218 4.218 5 C -0.041 4.041 6 C -0.115 4.115 7 C -0.099 4.099 8 C 0.460 3.540 9 O -0.564 6.564 10 N -0.445 5.445 11 C -0.311 4.311 12 H 0.108 0.892 13 C 0.031 3.969 14 N -0.881 5.881 15 Si 0.930 3.070 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.221 3.779 20 C 0.245 3.755 21 N -0.472 5.472 22 C 0.155 3.845 23 F -0.128 7.128 24 C -0.190 4.190 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.273 0.727 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 -6.715 7.211 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.100 3.900 4 C -0.237 4.237 5 C -0.059 4.059 6 C -0.117 4.117 7 C -0.139 4.139 8 C 0.248 3.752 9 O -0.446 6.446 10 N -0.165 5.165 11 C -0.438 4.438 12 H 0.126 0.874 13 C -0.172 4.172 14 N -0.521 5.521 15 Si 0.756 3.244 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.194 1.194 19 C 0.093 3.907 20 C -0.073 4.073 21 N -0.152 5.152 22 C 0.135 3.865 23 F -0.106 7.106 24 C -0.209 4.209 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.179 -7.612 7.399 16.155 hybrid contribution 0.027 0.835 -1.032 1.328 sum -12.152 -6.777 6.366 15.301 Atomic orbital electron populations 1.23058 0.78315 1.03804 1.01542 1.86041 1.21414 1.26804 1.88779 1.18507 0.91295 0.84252 0.95937 1.21153 1.00045 0.92015 1.10481 1.20630 0.92711 0.97465 0.95144 1.19365 0.93833 0.93636 1.04816 1.20595 1.01499 0.93952 0.97857 1.19938 0.84037 0.81611 0.89583 1.90564 1.57369 1.50753 1.45938 1.43625 1.51460 1.15302 1.06155 1.19734 1.21491 1.19425 0.83123 0.87434 1.25282 0.93998 0.98388 0.99573 1.69822 1.16557 1.31217 1.34457 0.85874 0.77346 0.79477 0.81680 1.20110 1.21104 1.19443 1.18773 0.85567 0.98084 0.88226 1.29337 0.94983 0.92310 0.90709 1.80921 1.11419 1.09747 1.13156 1.17094 0.77082 0.93081 0.99216 1.91536 1.28743 1.97063 1.93306 1.20118 0.92494 0.97354 1.10976 0.92441 0.88350 0.92582 0.85079 0.84751 0.89101 0.88516 0.91616 0.85204 0.89991 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.89 10.49 -19.43 -0.20 -4.09 16 3 C 0.15 2.02 6.68 -39.23 -0.26 1.76 16 4 C -0.22 -2.74 9.04 -39.42 -0.36 -3.10 16 5 C -0.04 -0.57 9.67 -39.61 -0.38 -0.96 16 6 C -0.11 -1.94 4.38 -104.53 -0.46 -2.40 16 7 C -0.10 -1.72 4.21 -29.03 -0.12 -1.84 16 8 C 0.46 10.43 7.56 -10.99 -0.08 10.34 16 9 O -0.56 -14.89 15.69 5.55 0.09 -14.80 16 10 N -0.44 -10.33 2.60 -117.93 -0.31 -10.64 16 11 C -0.31 -8.01 9.33 -14.93 -0.14 -8.15 16 12 H 0.11 2.93 7.38 -52.49 -0.39 2.55 16 13 C 0.03 0.76 4.94 -17.47 -0.09 0.67 16 14 N -0.88 -22.24 9.33 55.50 0.52 -21.72 16 15 Si 0.93 19.74 29.59 -169.99 -5.03 14.71 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C 0.22 4.32 4.91 -6.83 -0.03 4.29 16 20 C 0.24 5.44 12.95 -20.75 -0.27 5.17 16 21 N -0.47 -11.39 18.54 42.17 0.78 -10.61 16 22 C 0.15 2.76 7.24 -39.44 -0.29 2.47 16 23 F -0.13 -2.55 16.56 2.25 0.04 -2.51 16 24 C -0.19 -2.96 9.97 -39.37 -0.39 -3.35 16 25 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.09 1.62 7.16 -51.93 -0.37 1.24 16 31 H 0.10 1.28 7.32 -51.93 -0.38 0.90 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.13 2.60 6.40 -51.93 -0.33 2.26 16 34 H 0.08 1.18 6.68 -51.93 -0.35 0.84 16 35 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 313.93 15.07 4.73 4.73 Total: -1.00 -32.85 313.93 -4.61 -37.46 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -3.35 Total: 1.35 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.88 Total: 6.12 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.99 Total: -42.97 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.12 Total: -18.90 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.85 -4.61 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436298416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.114 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds