Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35901 * 117.00281 * 2 1 4 4 C 1.38764 * 120.03749 * 0.02562 * 3 2 1 5 5 C 1.38143 * 119.99204 * 179.70514 * 4 3 2 6 6 C 1.38251 * 120.07646 * 0.52923 * 5 4 3 7 7 C 1.50704 * 119.95675 * 179.77333 * 6 5 4 8 8 C 1.50703 * 109.46675 * 264.72196 * 7 6 5 9 9 O 1.21287 * 119.99957 * 359.72570 * 8 7 6 10 10 N 1.34774 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99836 * 179.97438 * 10 8 7 12 12 H 1.07996 * 119.99955 * 18.13194 * 11 10 8 13 13 C 1.38957 * 119.99793 * 198.12777 * 11 10 8 14 14 N 1.31405 * 120.00092 * 18.73174 * 13 11 10 15 15 Si 1.86804 * 119.99703 * 198.73254 * 13 11 10 16 16 H 1.48497 * 109.46922 * 85.58638 * 15 13 11 17 17 H 1.48490 * 109.46843 * 205.58906 * 15 13 11 18 18 H 1.48498 * 109.47030 * 325.58680 * 15 13 11 19 19 C 1.46501 * 120.00117 * 0.02562 * 10 8 7 20 20 C 1.47197 * 109.47172 * 84.19629 * 19 10 8 21 21 N 9.12804 * 132.22109 * 4.12568 * 2 1 3 22 22 C 1.38471 * 120.08608 * 359.48814 * 6 5 4 23 23 F 1.35107 * 119.99674 * 180.25202 * 22 6 5 24 24 C 1.38394 * 120.00643 * 0.23841 * 22 6 5 25 25 H 1.09006 * 109.47147 * 59.99952 * 1 2 3 26 26 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47196 * 300.00216 * 1 2 3 28 28 H 1.07998 * 120.01058 * 359.97438 * 4 3 2 29 29 H 1.07995 * 119.96415 * 180.30227 * 5 4 3 30 30 H 1.08989 * 109.47217 * 144.72116 * 7 6 5 31 31 H 1.09000 * 109.46940 * 24.72252 * 7 6 5 32 32 H 0.97000 * 119.99655 * 180.02562 * 14 13 11 33 33 H 1.08999 * 109.47051 * 204.19868 * 19 10 8 34 34 H 1.09001 * 109.46993 * 324.19977 * 19 10 8 35 35 H 1.07993 * 120.03678 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0067 6 6 3.2998 3.6786 0.0013 7 6 3.9822 5.0222 0.0028 8 6 4.3204 5.4154 -1.4121 9 8 4.0397 4.6750 -2.3308 10 7 4.9392 6.5876 -1.6562 11 6 5.2473 6.9450 -2.9434 12 1 4.7542 6.4582 -3.7718 13 6 6.1940 7.9338 -3.1822 14 7 7.0489 8.2660 -2.2411 15 14 6.2514 8.7908 -4.8410 16 1 5.2923 9.9245 -4.8458 17 1 7.6236 9.3022 -5.0867 18 1 5.8837 7.8269 -5.9091 19 6 5.2836 7.4792 -0.5460 20 6 6.5701 7.0636 0.0362 21 7 7.5629 6.7423 0.4863 22 6 4.0563 2.5188 0.0004 23 9 5.4053 2.5923 0.0002 24 6 3.4306 1.2844 -0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2125 2.3196 0.0005 29 1 1.3312 4.5113 0.0120 30 1 4.8971 4.9644 0.5924 31 1 3.3162 5.7675 0.4378 32 1 7.7094 8.9564 -2.4077 33 1 5.3645 8.5023 -0.9133 34 1 4.5062 7.4272 0.2163 35 1 4.0202 0.3795 -0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436298416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -70.297445 kcal Electronic energy + Delta-G solvation = -22834.868885 eV Core-core repulsion = 19133.945288 eV Total energy + Delta-G solvation = -3700.923597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.98598 -41.17979 -40.50750 -38.38375 -37.47652 -36.14016 -33.90656 -33.08291 -31.67310 -29.34563 -28.85599 -27.72280 -26.11176 -23.89358 -22.77206 -20.83187 -19.74071 -19.42695 -18.26713 -18.08468 -17.84082 -17.01211 -16.89932 -16.60593 -16.42496 -16.24782 -15.82872 -15.57271 -15.40195 -14.72039 -14.63363 -14.39246 -14.03076 -13.76918 -13.44747 -13.33085 -13.25946 -13.08712 -12.93562 -12.74480 -12.55836 -12.30189 -12.14028 -12.07988 -11.86067 -11.81592 -11.09882 -10.45884 -9.90787 -9.86526 -9.15036 -8.37317 -5.95722 0.15436 0.27790 1.41185 1.48284 1.58101 1.82723 2.08418 2.20971 2.27677 2.36455 2.55850 3.02640 3.22260 3.44519 3.62861 3.72848 3.74463 3.97360 4.11238 4.25077 4.32838 4.45553 4.47250 4.51188 4.61950 4.71527 4.80528 4.96090 5.03151 5.05160 5.23877 5.39660 5.49676 5.70014 6.05728 6.37555 6.42553 7.02810 7.14216 7.37300 7.94470 8.65566 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.004215 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.253067 B = 6641.898791 C = 7192.232212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.148 3.852 4 C -0.207 4.207 5 C -0.038 4.038 6 C -0.140 4.140 7 C -0.088 4.088 8 C 0.454 3.546 9 O -0.610 6.610 10 N -0.457 5.457 11 C -0.338 4.338 12 H 0.081 0.919 13 C 0.004 3.996 14 N -0.897 5.897 15 Si 0.988 3.012 16 H -0.256 1.256 17 H -0.287 1.287 18 H -0.281 1.281 19 C 0.221 3.779 20 C 0.257 3.743 21 N -0.513 5.513 22 C 0.119 3.881 23 F -0.153 7.153 24 C -0.206 4.206 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.274 0.726 33 H 0.128 0.872 34 H 0.143 0.857 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 -6.095 7.966 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.102 3.898 4 C -0.225 4.225 5 C -0.055 4.055 6 C -0.141 4.141 7 C -0.127 4.127 8 C 0.244 3.756 9 O -0.495 6.495 10 N -0.177 5.177 11 C -0.465 4.465 12 H 0.099 0.901 13 C -0.198 4.198 14 N -0.536 5.536 15 Si 0.812 3.188 16 H -0.181 1.181 17 H -0.213 1.213 18 H -0.206 1.206 19 C 0.094 3.906 20 C -0.060 4.060 21 N -0.194 5.194 22 C 0.099 3.901 23 F -0.132 7.132 24 C -0.226 4.226 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.188 0.812 29 H 0.185 0.815 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.051 -6.981 8.185 18.501 hybrid contribution 0.809 0.503 -1.280 1.595 sum -14.242 -6.479 6.905 17.103 Atomic orbital electron populations 1.23454 0.75689 1.05904 1.02841 1.86041 1.24090 1.26037 1.88315 1.18625 0.90825 0.85558 0.94825 1.21583 1.01913 0.90856 1.08162 1.21048 0.91577 0.99372 0.93544 1.19524 0.95213 0.92790 1.06586 1.20552 1.02429 0.95793 0.93967 1.20869 0.82599 0.80704 0.91383 1.90526 1.58934 1.52004 1.48052 1.43806 1.51380 1.16286 1.06234 1.19626 1.22390 1.20412 0.84086 0.90098 1.25890 0.93211 0.98242 1.02441 1.69915 1.16635 1.31290 1.35724 0.85016 0.77372 0.78614 0.77751 1.18054 1.21303 1.20611 1.19170 0.85927 0.96932 0.88554 1.29917 0.95153 0.91210 0.89731 1.80921 1.12737 1.11058 1.14697 1.17532 0.76333 0.94647 1.01564 1.91460 1.30625 1.97256 1.93852 1.20240 0.93853 0.96784 1.11697 0.91543 0.86125 0.90696 0.81160 0.81481 0.89815 0.83610 0.91627 0.85433 0.83956 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.41 10.49 -92.44 -0.97 -8.38 16 3 C 0.15 3.86 6.68 22.50 0.15 4.01 16 4 C -0.21 -4.50 9.04 22.37 0.20 -4.30 16 5 C -0.04 -0.93 9.67 22.25 0.22 -0.71 16 6 C -0.14 -4.57 4.38 -19.80 -0.09 -4.66 16 7 C -0.09 -2.91 4.21 29.10 0.12 -2.79 16 8 C 0.45 20.50 7.56 87.66 0.66 21.16 16 9 O -0.61 -32.89 15.69 -3.05 -0.05 -32.94 16 10 N -0.46 -21.08 2.60 -645.42 -1.68 -22.75 16 11 C -0.34 -17.63 9.33 84.04 0.78 -16.85 16 12 H 0.08 4.58 7.38 -2.91 -0.02 4.56 16 13 C 0.00 0.18 4.94 84.93 0.42 0.60 16 14 N -0.90 -45.05 9.33 21.66 0.20 -44.84 16 15 Si 0.99 40.41 29.59 68.60 2.03 42.44 16 16 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 17 H -0.29 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.22 8.26 4.91 84.57 0.42 8.68 16 20 C 0.26 11.29 12.95 89.44 1.16 12.45 16 21 N -0.51 -24.86 18.54 20.01 0.37 -24.49 16 22 C 0.12 4.32 7.24 22.36 0.16 4.48 16 23 F -0.15 -6.44 16.56 44.97 0.74 -5.69 16 24 C -0.21 -6.51 9.97 22.41 0.22 -6.28 16 25 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 26 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 28 H 0.17 2.30 6.30 -2.91 -0.02 2.28 16 29 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.08 2.92 7.16 -2.39 -0.02 2.90 16 31 H 0.15 3.26 7.32 -2.39 -0.02 3.24 16 32 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 33 H 0.13 4.90 6.40 -2.39 -0.02 4.89 16 34 H 0.14 3.55 6.68 -2.39 -0.02 3.54 16 35 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -74.97 313.93 7.33 -67.64 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.14 Total: 11.95 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.54 Total: 17.07 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -1.11 Total: -92.09 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.02 Total: -41.32 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.74 Total: -5.69 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -74.97 7.33 -67.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436298416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.660 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds