Wall clock time and date at job start Tue Mar 31 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00247 * 2 1 4 4 C 1.53003 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47077 * 64.99567 * 4 3 2 6 6 C 1.36891 * 120.00479 * 282.50727 * 5 4 3 7 7 H 1.08000 * 119.99491 * 315.12863 * 6 5 4 8 8 C 1.39032 * 120.00189 * 135.13374 * 6 5 4 9 9 N 1.31370 * 119.99886 * 338.17965 * 8 6 5 10 10 Si 1.86798 * 120.00141 * 158.18602 * 8 6 5 11 11 H 1.48500 * 109.46902 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47037 * 119.99354 * 10 8 6 13 13 H 1.48503 * 109.47021 * 239.99766 * 10 8 6 14 14 C 1.34782 * 119.99833 * 102.50356 * 5 4 3 15 15 O 1.21594 * 120.00500 * 186.70207 * 14 5 4 16 16 C 1.47646 * 119.99564 * 6.70858 * 14 5 4 17 17 C 1.39872 * 120.04827 * 323.50975 * 16 14 5 18 18 C 1.37852 * 120.19874 * 180.02562 * 17 16 14 19 19 C 1.38475 * 120.28203 * 359.97438 * 18 17 16 20 20 F 1.35103 * 119.95924 * 179.97438 * 19 18 17 21 21 C 1.40037 * 120.08617 * 0.02641 * 19 18 17 22 22 C 1.43206 * 120.09686 * 179.70373 * 21 19 18 23 23 N 9.55312 * 135.07947 * 330.02441 * 2 1 3 24 24 C 1.39339 * 119.80745 * 359.96960 * 21 19 18 25 25 H 1.08990 * 109.47347 * 60.00359 * 1 2 3 26 26 H 1.09003 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47072 * 299.99850 * 1 2 3 28 28 H 1.08995 * 109.47156 * 59.99771 * 3 2 1 29 29 H 1.09005 * 109.46510 * 300.00098 * 3 2 1 30 30 H 1.08998 * 109.46923 * 304.99763 * 4 3 2 31 31 H 1.08998 * 109.46835 * 184.99801 * 4 3 2 32 32 H 0.96996 * 120.00385 * 185.04791 * 9 8 6 33 33 H 1.08001 * 119.89806 * 359.97438 * 17 16 14 34 34 H 1.07996 * 119.85870 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.14264 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.8546 -0.7881 -1.4262 7 1 4.1455 -1.4623 -0.6341 8 6 3.3572 -1.2939 -2.6219 9 7 2.6195 -0.5347 -3.3999 10 14 3.7376 -3.0529 -3.1222 11 1 4.5820 -3.6920 -2.0811 12 1 2.4694 -3.8119 -3.2662 13 1 4.4645 -3.0531 -4.4172 14 6 4.4999 1.3253 -2.2339 15 8 4.7522 0.8325 -3.3165 16 6 4.7679 2.7573 -1.9941 17 6 3.8966 3.5093 -1.1992 18 6 4.1436 4.8467 -0.9737 19 6 5.2554 5.4552 -1.5315 20 9 5.4909 6.7664 -1.3066 21 6 6.1355 4.7135 -2.3292 22 6 7.2820 5.3440 -2.9113 23 7 8.1934 5.8434 -3.3704 24 6 5.8895 3.3614 -2.5594 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 2.2120 -0.9081 -4.1969 33 1 3.0274 3.0410 -0.7616 34 1 3.4671 5.4223 -0.3595 35 1 6.5644 2.7844 -3.1741 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457208051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:10 Heat of formation + Delta-G solvation = -26.085968 kcal Electronic energy + Delta-G solvation = -23229.644866 eV Core-core repulsion = 19530.638423 eV Total energy + Delta-G solvation = -3699.006444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.03942 -39.86616 -37.90644 -36.94745 -36.28578 -34.40761 -32.40255 -31.34734 -30.36919 -29.00353 -25.91418 -25.08040 -23.98897 -23.06707 -22.07970 -20.24998 -18.62772 -17.69998 -16.90953 -16.37231 -15.93578 -15.80967 -15.65272 -15.16741 -14.58434 -14.30313 -14.19303 -14.08659 -13.70732 -13.65802 -13.29533 -13.26908 -13.07285 -12.52485 -12.40653 -12.04152 -11.58320 -11.49231 -11.40499 -11.13795 -10.86988 -10.84208 -10.70451 -10.42759 -10.14679 -9.07587 -9.01619 -8.78961 -8.65770 -8.21897 -7.23797 -6.16142 -3.82119 0.60184 1.08334 2.62243 2.80816 3.30627 3.40652 3.42204 3.60434 3.75217 4.06156 4.21578 4.32741 4.44435 4.70519 4.71512 5.08654 5.16032 5.27899 5.37463 5.56067 5.70622 5.73219 5.78222 5.82239 5.87832 5.97387 5.97452 6.00566 6.14003 6.17840 6.42147 6.51123 6.71793 7.44672 7.61786 7.83948 8.20268 8.94128 9.03696 9.54641 10.11349 10.92280 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.005447 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.001848 B = 5139.432244 C = 6392.163076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.052 3.948 4 C 0.078 3.922 5 N -0.426 5.426 6 C -0.324 4.324 7 H 0.083 0.917 8 C 0.080 3.920 9 N -0.816 5.816 10 Si 0.909 3.091 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.282 1.282 14 C 0.491 3.509 15 O -0.525 6.525 16 C -0.098 4.098 17 C -0.068 4.068 18 C -0.156 4.156 19 C 0.135 3.865 20 F -0.133 7.133 21 C -0.068 4.068 22 C 0.263 3.737 23 N -0.416 5.416 24 C -0.007 4.007 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.263 0.737 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 7.451 8.386 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C -0.026 4.026 4 C -0.046 4.046 5 N -0.146 5.146 6 C -0.450 4.450 7 H 0.101 0.899 8 C -0.132 4.132 9 N -0.449 5.449 10 Si 0.736 3.264 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.208 1.208 14 C 0.279 3.721 15 O -0.404 6.404 16 C -0.102 4.102 17 C -0.087 4.087 18 C -0.175 4.175 19 C 0.112 3.888 20 F -0.112 7.112 21 C -0.073 4.073 22 C -0.053 4.053 23 N -0.091 5.091 24 C -0.028 4.028 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.390 7.838 6.920 10.547 hybrid contribution -0.708 -0.420 -0.052 0.825 sum -2.097 7.417 6.868 10.324 Atomic orbital electron populations 1.22609 0.83158 1.01915 0.98556 1.88186 1.17485 1.25893 1.94849 1.22909 0.95185 0.86075 0.98466 1.22247 0.92103 0.99150 0.91094 1.43134 1.51916 1.07240 1.12303 1.18939 1.44543 0.79637 1.01927 0.89897 1.25175 0.93373 0.98122 0.96530 1.69823 1.25355 1.36353 1.13331 0.86213 0.78052 0.83193 0.78957 1.19492 1.21291 1.20757 1.17680 0.83543 0.84023 0.86846 1.90675 1.54098 1.72498 1.23094 1.20662 0.94968 0.97228 0.97356 1.22092 0.99490 0.92436 0.94694 1.20983 0.97296 0.95738 1.03475 1.17675 0.95346 0.77795 0.97960 1.91515 1.94239 1.32536 1.92892 1.15853 0.93030 0.94043 1.04352 1.25348 0.92862 0.93511 0.93540 1.81201 1.10709 1.08029 1.09199 1.21123 0.96036 0.90661 0.95030 0.94623 0.90440 0.95610 0.94397 0.93379 0.91156 0.89188 0.92680 0.82691 0.83658 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -6.64 9.59 -35.23 -0.34 -6.98 16 3 C 0.05 0.84 5.22 37.16 0.19 1.03 16 4 C 0.08 1.33 5.34 -4.04 -0.02 1.31 16 5 N -0.43 -9.59 2.53 -115.96 -0.29 -9.88 16 6 C -0.32 -8.25 8.11 -15.00 -0.12 -8.37 16 7 H 0.08 2.09 7.92 -52.49 -0.42 1.68 16 8 C 0.08 2.12 4.27 -17.45 -0.07 2.05 16 9 N -0.82 -22.67 11.85 55.50 0.66 -22.02 16 10 Si 0.91 21.12 29.61 -169.99 -5.03 16.09 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.49 11.28 6.83 -12.42 -0.08 11.19 16 15 O -0.53 -14.44 14.45 5.28 0.08 -14.37 16 16 C -0.10 -1.70 5.43 -105.02 -0.57 -2.27 16 17 C -0.07 -0.93 7.36 -39.11 -0.29 -1.22 16 18 C -0.16 -1.77 9.99 -39.64 -0.40 -2.17 16 19 C 0.13 1.73 7.28 -38.82 -0.28 1.44 16 20 F -0.13 -1.73 16.80 2.25 0.04 -1.69 16 21 C -0.07 -0.97 5.73 -106.88 -0.61 -1.58 16 22 C 0.26 4.01 14.96 -22.47 -0.34 3.67 16 23 N -0.42 -6.95 18.54 41.84 0.78 -6.18 16 24 C -0.01 -0.11 9.32 -38.75 -0.36 -0.47 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.83 7.12 -51.93 -0.37 0.46 16 30 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 31 H 0.09 1.25 4.09 -51.93 -0.21 1.04 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.16 2.03 3.43 -52.49 -0.18 1.85 16 34 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.15 2.38 8.02 -52.49 -0.42 1.96 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -31.76 313.19 -4.51 -36.27 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.27 Total: -2.22 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.84 Total: 6.25 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 1.14 Total: -38.07 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.26 Total: -21.34 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.76 -4.51 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.182 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds