Wall clock time and date at job start Tue Mar 31 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00247 * 2 1 4 4 C 1.53003 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47077 * 64.99567 * 4 3 2 6 6 C 1.36891 * 120.00479 * 282.50727 * 5 4 3 7 7 H 1.08000 * 119.99491 * 315.12863 * 6 5 4 8 8 C 1.39032 * 120.00189 * 135.13374 * 6 5 4 9 9 N 1.31370 * 119.99886 * 338.17965 * 8 6 5 10 10 Si 1.86798 * 120.00141 * 158.18602 * 8 6 5 11 11 H 1.48500 * 109.46902 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47037 * 119.99354 * 10 8 6 13 13 H 1.48503 * 109.47021 * 239.99766 * 10 8 6 14 14 C 1.34782 * 119.99833 * 102.50356 * 5 4 3 15 15 O 1.21594 * 120.00500 * 186.70207 * 14 5 4 16 16 C 1.47646 * 119.99564 * 6.70858 * 14 5 4 17 17 C 1.39872 * 120.04827 * 323.50975 * 16 14 5 18 18 C 1.37852 * 120.19874 * 180.02562 * 17 16 14 19 19 C 1.38475 * 120.28203 * 359.97438 * 18 17 16 20 20 F 1.35103 * 119.95924 * 179.97438 * 19 18 17 21 21 C 1.40037 * 120.08617 * 0.02641 * 19 18 17 22 22 C 1.43206 * 120.09686 * 179.70373 * 21 19 18 23 23 N 9.55312 * 135.07947 * 330.02441 * 2 1 3 24 24 C 1.39339 * 119.80745 * 359.96960 * 21 19 18 25 25 H 1.08990 * 109.47347 * 60.00359 * 1 2 3 26 26 H 1.09003 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47072 * 299.99850 * 1 2 3 28 28 H 1.08995 * 109.47156 * 59.99771 * 3 2 1 29 29 H 1.09005 * 109.46510 * 300.00098 * 3 2 1 30 30 H 1.08998 * 109.46923 * 304.99763 * 4 3 2 31 31 H 1.08998 * 109.46835 * 184.99801 * 4 3 2 32 32 H 0.96996 * 120.00385 * 185.04791 * 9 8 6 33 33 H 1.08001 * 119.89806 * 359.97438 * 17 16 14 34 34 H 1.07996 * 119.85870 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.14264 * 179.97438 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.8546 -0.7881 -1.4262 7 1 4.1455 -1.4623 -0.6341 8 6 3.3572 -1.2939 -2.6219 9 7 2.6195 -0.5347 -3.3999 10 14 3.7376 -3.0529 -3.1222 11 1 4.5820 -3.6920 -2.0811 12 1 2.4694 -3.8119 -3.2662 13 1 4.4645 -3.0531 -4.4172 14 6 4.4999 1.3253 -2.2339 15 8 4.7522 0.8325 -3.3165 16 6 4.7679 2.7573 -1.9941 17 6 3.8966 3.5093 -1.1992 18 6 4.1436 4.8467 -0.9737 19 6 5.2554 5.4552 -1.5315 20 9 5.4909 6.7664 -1.3066 21 6 6.1355 4.7135 -2.3292 22 6 7.2820 5.3440 -2.9113 23 7 8.1934 5.8434 -3.3704 24 6 5.8895 3.3614 -2.5594 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8900 30 1 3.8514 0.5682 0.8409 31 1 3.9785 2.1765 0.0889 32 1 2.2120 -0.9081 -4.1969 33 1 3.0274 3.0410 -0.7616 34 1 3.4671 5.4223 -0.3595 35 1 6.5644 2.7844 -3.1741 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457208051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:09 Heat of formation + Delta-G solvation = -46.449823 kcal Electronic energy + Delta-G solvation = -23230.527909 eV Core-core repulsion = 19530.638423 eV Total energy + Delta-G solvation = -3699.889487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.11932 -41.26627 -39.30392 -38.36077 -37.58641 -36.09220 -34.13033 -32.61480 -31.70864 -30.44911 -27.28072 -26.68491 -25.17708 -24.48164 -23.41404 -21.67432 -20.12427 -18.85752 -18.43009 -17.70895 -17.34756 -16.97779 -16.92124 -16.76812 -16.04130 -15.85298 -15.66101 -15.23316 -15.06732 -14.90464 -14.68066 -14.66035 -14.42150 -13.83724 -13.79145 -13.49388 -13.07727 -12.90905 -12.82101 -12.62703 -12.57446 -12.45451 -12.09909 -11.98396 -11.71554 -10.73693 -10.24273 -10.21935 -10.13311 -9.75406 -9.06608 -8.10835 -5.78854 -0.56906 -0.07970 1.38877 1.41712 1.49822 1.55673 1.60443 2.28595 2.40175 2.57028 2.81830 2.92482 3.07602 3.21663 3.37264 3.62802 3.91880 4.00441 4.14625 4.38342 4.46986 4.55733 4.57579 4.64421 4.73408 4.75395 4.78467 4.83410 4.94873 4.98814 5.19428 5.24630 5.57757 5.63961 6.22421 6.30491 6.64225 7.11957 7.23411 7.73355 8.34375 8.97865 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.005447 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.001848 B = 5139.432244 C = 6392.163076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.051 3.949 4 C 0.074 3.926 5 N -0.441 5.441 6 C -0.334 4.334 7 H 0.077 0.923 8 C 0.038 3.962 9 N -0.853 5.853 10 Si 0.953 3.047 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.299 1.299 14 C 0.487 3.513 15 O -0.584 6.584 16 C -0.121 4.121 17 C -0.052 4.052 18 C -0.127 4.127 19 C 0.155 3.845 20 F -0.127 7.127 21 C -0.068 4.068 22 C 0.276 3.724 23 N -0.443 5.443 24 C -0.006 4.006 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.255 0.745 33 H 0.168 0.832 34 H 0.196 0.804 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 9.945 10.964 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.027 4.027 4 C -0.049 4.049 5 N -0.161 5.161 6 C -0.462 4.462 7 H 0.095 0.905 8 C -0.170 4.170 9 N -0.488 5.488 10 Si 0.779 3.221 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.227 1.227 14 C 0.276 3.724 15 O -0.467 6.467 16 C -0.125 4.125 17 C -0.071 4.071 18 C -0.145 4.145 19 C 0.133 3.867 20 F -0.105 7.105 21 C -0.072 4.072 22 C -0.039 4.039 23 N -0.118 5.118 24 C -0.028 4.028 25 H 0.044 0.956 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.064 0.936 33 H 0.185 0.815 34 H 0.213 0.787 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.260 10.343 9.555 14.261 hybrid contribution -0.367 -0.987 -0.760 1.299 sum -2.626 9.355 8.796 13.107 Atomic orbital electron populations 1.22712 0.81481 1.02412 0.99707 1.88119 1.19544 1.27854 1.95171 1.23005 0.94110 0.85435 1.00121 1.22550 0.93304 1.00607 0.88421 1.43303 1.52225 1.06609 1.13936 1.18975 1.44153 0.81467 1.01555 0.90511 1.25764 0.93562 1.00711 0.96939 1.69908 1.27543 1.37457 1.13859 0.85521 0.78027 0.80679 0.77831 1.18386 1.20413 1.22661 1.18445 0.81884 0.86170 0.85866 1.90628 1.56089 1.74469 1.25505 1.20184 0.97135 0.94680 1.00542 1.22147 0.98622 0.93220 0.93145 1.21338 0.96620 0.94433 1.02093 1.17782 0.94800 0.77746 0.96357 1.91553 1.94165 1.32153 1.92610 1.15727 0.93189 0.93299 1.05022 1.25455 0.92651 0.92892 0.92907 1.81218 1.11509 1.09040 1.10081 1.20913 0.95682 0.91294 0.94869 0.95634 0.90493 0.92058 0.89287 0.94741 0.90783 0.85724 0.93604 0.81494 0.78711 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.39 -14.45 9.59 -148.98 -1.43 -15.88 16 3 C 0.05 1.50 5.22 71.98 0.38 1.88 16 4 C 0.07 2.36 5.34 86.38 0.46 2.82 16 5 N -0.44 -19.97 2.53 -639.03 -1.62 -21.59 16 6 C -0.33 -17.44 8.11 84.09 0.68 -16.76 16 7 H 0.08 3.98 7.92 -2.91 -0.02 3.95 16 8 C 0.04 2.08 4.27 84.95 0.36 2.44 16 9 N -0.85 -49.46 11.85 21.68 0.26 -49.20 16 10 Si 0.95 44.94 29.61 68.60 2.03 46.97 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 14 C 0.49 22.76 6.83 86.73 0.59 23.35 16 15 O -0.58 -33.65 14.45 -4.01 -0.06 -33.70 16 16 C -0.12 -4.08 5.43 -20.12 -0.11 -4.19 16 17 C -0.05 -1.23 7.36 22.57 0.17 -1.07 16 18 C -0.13 -2.13 9.99 22.23 0.22 -1.91 16 19 C 0.16 3.28 7.28 22.76 0.17 3.44 16 20 F -0.13 -2.66 16.80 44.97 0.76 -1.90 16 21 C -0.07 -1.77 5.73 -21.33 -0.12 -1.89 16 22 C 0.28 7.98 14.96 88.33 1.32 9.31 16 23 N -0.44 -14.33 18.54 19.01 0.35 -13.98 16 24 C -0.01 -0.18 9.32 22.81 0.21 0.03 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.03 1.11 7.12 -2.38 -0.02 1.10 16 30 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 31 H 0.13 3.01 4.09 -2.39 -0.01 3.00 16 32 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.17 3.65 3.43 -2.91 -0.01 3.64 16 34 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.13 4.47 8.02 -2.91 -0.02 4.45 16 Total: -1.00 -74.00 313.19 7.02 -66.98 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.15 Total: 2.64 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 5.58 Total: 19.67 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -1.01 Total: -84.77 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.49 Total: -49.58 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.76 Total: -1.90 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -74.00 7.02 -66.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.526 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds