Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 103.00245 * 2 1 4 4 C 1.50701 * 112.84946 * 284.76085 * 3 2 1 5 5 O 1.21279 * 120.00372 * 144.32794 * 4 3 2 6 6 N 1.34775 * 119.99839 * 324.33146 * 4 3 2 7 7 C 1.39466 * 120.00117 * 174.64091 * 6 4 3 8 8 C 1.38597 * 119.58003 * 20.66248 * 7 6 4 9 9 C 1.40808 * 118.79614 * 179.78002 * 8 7 6 10 10 C 1.41548 * 120.99897 * 180.25799 * 9 8 7 11 11 H 1.07999 * 120.00458 * 207.14323 * 10 9 8 12 12 C 1.40029 * 119.99494 * 27.13780 * 10 9 8 13 13 N 1.30743 * 120.00177 * 10.70758 * 12 10 9 14 14 Si 1.86801 * 120.00035 * 190.70160 * 12 10 9 15 15 H 1.48504 * 109.46966 * 59.99884 * 14 12 10 16 16 H 1.48498 * 109.47513 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46942 * 300.00567 * 14 12 10 18 18 C 1.41176 * 118.01041 * 0.48559 * 9 8 7 19 19 C 1.37594 * 119.01040 * 359.75027 * 18 9 8 20 20 N 1.32081 * 121.11021 * 0.02562 * 19 18 9 21 21 C 1.53781 * 113.61154 * 55.95320 * 3 2 1 22 22 C 1.53780 * 87.07989 * 139.98485 * 21 3 2 23 23 C 1.53783 * 87.17333 * 334.52335 * 22 21 3 24 24 H 1.08995 * 109.46795 * 64.73538 * 1 2 3 25 25 H 1.08999 * 109.47128 * 184.73327 * 1 2 3 26 26 H 1.09001 * 109.47118 * 304.73635 * 1 2 3 27 27 H 0.97000 * 120.00045 * 354.63697 * 6 4 3 28 28 H 1.08002 * 120.59982 * 0.02562 * 8 7 6 29 29 H 0.97003 * 119.99910 * 179.97438 * 13 12 10 30 30 H 1.07999 * 120.49824 * 179.77874 * 18 9 8 31 31 H 1.07998 * 119.44431 * 180.02562 * 19 18 9 32 32 H 1.08998 * 113.62025 * 25.43487 * 21 3 2 33 33 H 1.09010 * 113.68942 * 254.54178 * 21 3 2 34 34 H 1.08998 * 113.61593 * 89.11582 * 22 21 3 35 35 H 1.08994 * 113.61653 * 219.93428 * 22 21 3 36 36 H 1.08996 * 113.61177 * 140.02050 * 23 22 21 37 37 H 1.08991 * 113.61483 * 270.92728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 2.0091 2.4173 -1.3429 5 8 1.6054 3.5592 -1.4069 6 7 2.2670 1.7295 -2.4729 7 6 1.9649 2.2889 -3.7142 8 6 1.8147 3.6621 -3.8274 9 6 1.5144 4.2097 -5.0894 10 6 1.3565 5.6061 -5.2593 11 1 0.7281 5.9861 -6.0511 12 6 2.0149 6.4947 -4.4004 13 7 2.9332 6.0527 -3.5813 14 14 1.5816 8.3115 -4.4251 15 1 0.1458 8.4826 -4.0863 16 1 2.4149 9.0328 -3.4299 17 1 1.8397 8.8636 -5.7793 18 6 1.3708 3.3240 -6.1794 19 6 1.5335 1.9742 -5.9682 20 7 1.8195 1.5006 -4.7688 21 6 1.5921 2.5452 1.1675 22 6 2.9209 3.3122 1.2706 23 6 3.5912 2.0849 0.6309 24 1 -0.3633 0.4386 -0.9293 25 1 -0.3633 -1.0241 0.0848 26 1 -0.3633 0.5856 0.8445 27 1 2.6628 0.8453 -2.4228 28 1 1.9299 4.3008 -2.9642 29 1 3.3895 6.6684 -2.9866 30 1 1.1371 3.7004 -7.1643 31 1 1.4256 1.2903 -6.7971 32 1 1.3764 1.9264 2.0385 33 1 0.7488 3.1701 0.8731 34 1 2.9591 4.2053 0.6468 35 1 3.2392 3.4985 2.2962 36 1 4.3612 2.3382 -0.0978 37 1 3.9212 1.3405 1.3554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584325672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = 26.015024 kcal Electronic energy + Delta-G solvation = -21381.561267 eV Core-core repulsion = 18251.027268 eV Total energy + Delta-G solvation = -3130.533999 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44204 -38.45902 -36.83579 -34.41461 -33.58095 -30.51898 -29.15713 -28.84222 -26.36946 -25.83730 -25.71063 -22.52523 -21.68954 -20.47795 -19.04608 -17.86290 -17.53784 -16.01824 -15.89337 -15.25989 -15.01249 -14.74931 -14.38116 -14.23001 -13.75238 -13.61036 -13.41875 -13.06907 -12.71336 -12.64357 -12.48329 -12.35077 -12.08957 -11.42273 -11.25408 -11.07672 -11.02057 -10.82634 -10.52125 -10.45193 -10.21230 -9.90553 -9.70424 -9.30316 -8.82042 -8.09030 -7.88303 -7.70515 -7.00900 -6.70335 -4.53216 1.52702 2.27146 2.61196 2.88542 3.06680 3.09330 3.14687 3.34713 3.47587 3.92444 4.32859 4.42722 4.71531 4.73321 4.87871 5.10348 5.15395 5.34769 5.54928 5.64889 5.71112 5.71302 5.86469 5.92633 5.93282 5.96210 6.36330 6.56534 6.76748 6.81961 7.06051 7.18567 7.41191 7.62000 7.89891 7.93851 8.35776 8.51054 8.75535 8.82525 8.92682 9.56834 10.18643 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.005861 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.112292 B = 4776.595578 C = 5991.596545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.234 6.234 3 C -0.084 4.084 4 C 0.529 3.471 5 O -0.490 6.490 6 N -0.637 5.637 7 C 0.312 3.688 8 C -0.217 4.217 9 C 0.132 3.868 10 C -0.453 4.453 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.779 5.779 14 Si 0.914 3.086 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.287 4.287 19 C 0.118 3.882 20 N -0.598 5.598 21 C -0.110 4.110 22 C -0.132 4.132 23 C -0.097 4.097 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.407 0.593 28 H 0.180 0.820 29 H 0.282 0.718 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -6.287 10.587 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.005 6.005 3 C -0.198 4.198 4 C 0.311 3.689 5 O -0.364 6.364 6 N -0.281 5.281 7 C 0.091 3.909 8 C -0.241 4.241 9 C 0.123 3.877 10 C -0.484 4.484 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.404 5.404 14 Si 0.738 3.262 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.190 1.190 18 C -0.311 4.311 19 C -0.036 4.036 20 N -0.318 5.318 21 C -0.149 4.149 22 C -0.171 4.171 23 C -0.136 4.136 24 H 0.097 0.903 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.243 0.757 28 H 0.196 0.804 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.207 -7.245 10.885 13.078 hybrid contribution -0.884 2.046 -0.360 2.258 sum -0.678 -5.199 10.525 11.759 Atomic orbital electron populations 1.23396 0.93853 1.06269 1.05562 1.86567 1.08040 1.08298 1.97579 1.24601 1.04492 0.94027 0.96644 1.19523 0.78817 0.86286 0.84287 1.90678 1.43706 1.16286 1.85715 1.42982 1.60430 1.20855 1.03847 1.18148 0.99112 0.89540 0.84121 1.23108 1.07809 0.92243 1.00948 1.17833 0.86452 0.93411 0.89977 1.19535 1.25444 0.90315 1.13129 0.90172 1.25950 0.93242 1.01723 0.93501 1.69730 1.16618 1.37530 1.16514 0.86284 0.79735 0.81256 0.78938 1.18790 1.20208 1.18971 1.21881 1.16047 0.94387 0.98760 1.21509 0.96734 0.93225 0.92180 1.66573 1.25841 1.39862 0.99537 1.23019 0.99130 0.97966 0.94830 1.22857 0.95019 0.97664 1.01546 1.22815 0.92649 0.98493 0.99655 0.90252 0.88016 0.90205 0.75726 0.80385 0.90700 0.88054 0.85843 0.88668 0.89655 0.88499 0.90617 0.90016 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.53 101.05 1.06 -0.35 16 2 S -0.23 -3.05 20.75 -107.50 -2.23 -5.28 16 3 C -0.08 -1.22 1.20 -90.82 -0.11 -1.33 16 4 C 0.53 10.35 6.78 -10.99 -0.07 10.27 16 5 O -0.49 -11.37 12.01 5.56 0.07 -11.30 16 6 N -0.64 -13.26 5.22 -11.49 -0.06 -13.32 16 7 C 0.31 7.83 7.51 -154.70 -1.16 6.67 16 8 C -0.22 -5.98 7.56 -38.48 -0.29 -6.27 16 9 C 0.13 3.65 5.59 -106.55 -0.60 3.05 16 10 C -0.45 -12.27 9.13 -37.65 -0.34 -12.62 16 11 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 12 C 0.08 1.94 5.29 -17.34 -0.09 1.85 16 13 N -0.78 -20.68 10.80 55.55 0.60 -20.08 16 14 Si 0.91 19.06 29.57 -169.99 -5.03 14.03 16 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 C -0.29 -7.18 9.90 -38.70 -0.38 -7.56 16 19 C 0.12 2.78 11.15 -17.68 -0.20 2.59 16 20 N -0.60 -14.68 10.36 -12.52 -0.13 -14.81 16 21 C -0.11 -1.39 6.38 -25.92 -0.17 -1.55 16 22 C -0.13 -1.63 7.68 -25.92 -0.20 -1.83 16 23 C -0.10 -1.21 7.27 -25.77 -0.19 -1.40 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.08 0.81 7.77 -51.92 -0.40 0.41 16 27 H 0.41 7.58 7.94 -40.82 -0.32 7.26 16 28 H 0.18 5.08 3.27 -53.14 -0.17 4.90 16 29 H 0.28 6.87 8.29 -40.82 -0.34 6.53 16 30 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 31 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 32 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.08 1.22 7.65 -51.92 -0.40 0.82 16 34 H 0.10 1.45 7.61 -51.93 -0.40 1.06 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -30.51 321.25 -9.29 -39.80 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -4.62 Total: 14.59 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.74 Total: -8.47 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.41 Total: -48.21 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.23 Total: -5.28 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.51 -9.29 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584325672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.812 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds