Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 103.00245 * 2 1 4 4 C 1.50701 * 112.84946 * 284.76085 * 3 2 1 5 5 O 1.21279 * 120.00372 * 144.32794 * 4 3 2 6 6 N 1.34775 * 119.99839 * 324.33146 * 4 3 2 7 7 C 1.39466 * 120.00117 * 174.64091 * 6 4 3 8 8 C 1.38597 * 119.58003 * 20.66248 * 7 6 4 9 9 C 1.40808 * 118.79614 * 179.78002 * 8 7 6 10 10 C 1.41548 * 120.99897 * 180.25799 * 9 8 7 11 11 H 1.07999 * 120.00458 * 207.14323 * 10 9 8 12 12 C 1.40029 * 119.99494 * 27.13780 * 10 9 8 13 13 N 1.30743 * 120.00177 * 10.70758 * 12 10 9 14 14 Si 1.86801 * 120.00035 * 190.70160 * 12 10 9 15 15 H 1.48504 * 109.46966 * 59.99884 * 14 12 10 16 16 H 1.48498 * 109.47513 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46942 * 300.00567 * 14 12 10 18 18 C 1.41176 * 118.01041 * 0.48559 * 9 8 7 19 19 C 1.37594 * 119.01040 * 359.75027 * 18 9 8 20 20 N 1.32081 * 121.11021 * 0.02562 * 19 18 9 21 21 C 1.53781 * 113.61154 * 55.95320 * 3 2 1 22 22 C 1.53780 * 87.07989 * 139.98485 * 21 3 2 23 23 C 1.53783 * 87.17333 * 334.52335 * 22 21 3 24 24 H 1.08995 * 109.46795 * 64.73538 * 1 2 3 25 25 H 1.08999 * 109.47128 * 184.73327 * 1 2 3 26 26 H 1.09001 * 109.47118 * 304.73635 * 1 2 3 27 27 H 0.97000 * 120.00045 * 354.63697 * 6 4 3 28 28 H 1.08002 * 120.59982 * 0.02562 * 8 7 6 29 29 H 0.97003 * 119.99910 * 179.97438 * 13 12 10 30 30 H 1.07999 * 120.49824 * 179.77874 * 18 9 8 31 31 H 1.07998 * 119.44431 * 180.02562 * 19 18 9 32 32 H 1.08998 * 113.62025 * 25.43487 * 21 3 2 33 33 H 1.09010 * 113.68942 * 254.54178 * 21 3 2 34 34 H 1.08998 * 113.61593 * 89.11582 * 22 21 3 35 35 H 1.08994 * 113.61653 * 219.93428 * 22 21 3 36 36 H 1.08996 * 113.61177 * 140.02050 * 23 22 21 37 37 H 1.08991 * 113.61483 * 270.92728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 2.0091 2.4173 -1.3429 5 8 1.6054 3.5592 -1.4069 6 7 2.2670 1.7295 -2.4729 7 6 1.9649 2.2889 -3.7142 8 6 1.8147 3.6621 -3.8274 9 6 1.5144 4.2097 -5.0894 10 6 1.3565 5.6061 -5.2593 11 1 0.7281 5.9861 -6.0511 12 6 2.0149 6.4947 -4.4004 13 7 2.9332 6.0527 -3.5813 14 14 1.5816 8.3115 -4.4251 15 1 0.1458 8.4826 -4.0863 16 1 2.4149 9.0328 -3.4299 17 1 1.8397 8.8636 -5.7793 18 6 1.3708 3.3240 -6.1794 19 6 1.5335 1.9742 -5.9682 20 7 1.8195 1.5006 -4.7688 21 6 1.5921 2.5452 1.1675 22 6 2.9209 3.3122 1.2706 23 6 3.5912 2.0849 0.6309 24 1 -0.3633 0.4386 -0.9293 25 1 -0.3633 -1.0241 0.0848 26 1 -0.3633 0.5856 0.8445 27 1 2.6628 0.8453 -2.4228 28 1 1.9299 4.3008 -2.9642 29 1 3.3895 6.6684 -2.9866 30 1 1.1371 3.7004 -7.1643 31 1 1.4256 1.2903 -6.7971 32 1 1.3764 1.9264 2.0385 33 1 0.7488 3.1701 0.8731 34 1 2.9591 4.2053 0.6468 35 1 3.2392 3.4985 2.2962 36 1 4.3612 2.3382 -0.0978 37 1 3.9212 1.3405 1.3554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584325672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = 8.091164 kcal Electronic energy + Delta-G solvation = -21382.338504 eV Core-core repulsion = 18251.027268 eV Total energy + Delta-G solvation = -3131.311236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.95203 -40.14841 -38.30316 -36.28898 -35.41791 -32.49764 -30.77773 -29.95704 -27.96904 -27.56252 -26.72005 -24.21134 -23.47382 -22.16922 -20.49434 -19.62482 -18.86731 -17.81622 -17.23838 -17.09758 -16.39462 -16.22135 -16.05626 -15.63833 -15.44947 -14.92591 -14.48835 -14.45973 -14.37460 -14.27531 -14.05664 -13.44550 -13.35668 -13.17591 -12.97177 -12.74550 -12.43360 -12.09096 -12.00247 -11.91378 -11.56599 -11.51063 -11.17428 -11.05126 -10.47478 -10.04636 -9.86371 -8.95721 -8.75600 -8.62739 -6.58030 0.40946 0.70005 0.99419 1.26709 1.34426 1.47517 1.50364 1.73556 1.89591 2.16668 2.77477 3.20670 3.32420 3.49121 3.70659 3.72606 4.14767 4.20165 4.25083 4.30336 4.62867 4.67780 4.73197 4.80108 4.81863 4.87673 4.89320 4.90202 5.00109 5.12545 5.27009 5.36518 5.49232 5.66172 5.97054 6.17193 6.43134 6.53675 6.79995 6.88425 7.15228 7.62305 8.27449 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.005861 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.112292 B = 4776.595578 C = 5991.596545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.221 6.221 3 C -0.091 4.091 4 C 0.524 3.476 5 O -0.530 6.530 6 N -0.634 5.634 7 C 0.311 3.689 8 C -0.255 4.255 9 C 0.099 3.901 10 C -0.487 4.487 11 H 0.085 0.915 12 C 0.031 3.969 13 N -0.810 5.810 14 Si 0.988 3.012 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.252 1.252 18 C -0.301 4.301 19 C 0.120 3.880 20 N -0.601 5.601 21 C -0.100 4.100 22 C -0.130 4.130 23 C -0.088 4.088 24 H 0.053 0.947 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.417 0.583 28 H 0.167 0.833 29 H 0.287 0.713 30 H 0.118 0.882 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -7.149 11.926 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.008 5.992 3 C -0.204 4.204 4 C 0.309 3.691 5 O -0.406 6.406 6 N -0.279 5.279 7 C 0.088 3.912 8 C -0.279 4.279 9 C 0.091 3.909 10 C -0.517 4.517 11 H 0.103 0.897 12 C -0.185 4.185 13 N -0.435 5.435 14 Si 0.808 3.192 15 H -0.186 1.186 16 H -0.191 1.191 17 H -0.176 1.176 18 C -0.325 4.325 19 C -0.035 4.035 20 N -0.321 5.321 21 C -0.140 4.140 22 C -0.169 4.169 23 C -0.126 4.126 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.114 0.886 27 H 0.255 0.745 28 H 0.183 0.817 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.184 0.816 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.205 -8.150 12.229 14.697 hybrid contribution -0.897 2.194 -0.797 2.501 sum -0.693 -5.955 11.432 12.909 Atomic orbital electron populations 1.23502 0.92803 1.07922 1.04936 1.86524 1.09193 1.06058 1.97377 1.24551 1.06777 0.95356 0.93735 1.20516 0.77148 0.85817 0.85659 1.90653 1.45137 1.18274 1.86555 1.43024 1.60579 1.21303 1.03033 1.18390 0.97851 0.89267 0.85678 1.23155 1.10432 0.93446 1.00873 1.18302 0.87105 0.94535 0.90968 1.19866 1.26573 0.90870 1.14423 0.89710 1.26904 0.92539 1.06548 0.92540 1.69820 1.17352 1.39329 1.17005 0.85165 0.79374 0.74996 0.79653 1.18628 1.19105 1.17623 1.22125 1.16463 0.94990 0.98921 1.22177 0.94816 0.93510 0.92969 1.66775 1.26020 1.39490 0.99831 1.23093 0.98267 0.97729 0.94874 1.22788 0.95109 0.96263 1.02757 1.22905 0.90949 0.99168 0.99603 0.92757 0.85608 0.88577 0.74519 0.81655 0.90226 0.86421 0.81607 0.85105 0.91884 0.92135 0.87180 0.91509 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 10.53 113.37 1.19 -1.41 16 2 S -0.22 -5.29 20.75 -56.49 -1.17 -6.46 16 3 C -0.09 -2.56 1.20 -10.92 -0.01 -2.57 16 4 C 0.52 21.08 6.78 87.66 0.59 21.67 16 5 O -0.53 -25.94 12.01 -3.02 -0.04 -25.97 16 6 N -0.63 -26.95 5.22 -308.66 -1.61 -28.56 16 7 C 0.31 16.01 7.51 132.75 1.00 17.01 16 8 C -0.25 -14.66 7.56 22.98 0.17 -14.49 16 9 C 0.10 5.70 5.59 -21.11 -0.12 5.58 16 10 C -0.49 -27.25 9.13 23.52 0.21 -27.03 16 11 H 0.08 4.47 7.87 -2.91 -0.02 4.44 16 12 C 0.03 1.65 5.29 85.29 0.45 2.11 16 13 N -0.81 -44.68 10.80 21.84 0.24 -44.45 16 14 Si 0.99 39.60 29.57 68.60 2.03 41.63 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 18 C -0.30 -15.27 9.90 22.84 0.23 -15.05 16 19 C 0.12 5.56 11.15 84.50 0.94 6.50 16 20 N -0.60 -29.50 10.36 -193.53 -2.01 -31.51 16 21 C -0.10 -2.38 6.38 31.12 0.20 -2.18 16 22 C -0.13 -3.07 7.68 31.12 0.24 -2.83 16 23 C -0.09 -2.03 7.27 31.21 0.23 -1.81 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.10 1.72 7.77 -2.39 -0.02 1.70 16 27 H 0.42 15.57 7.94 -92.71 -0.74 14.84 16 28 H 0.17 9.98 3.27 -13.25 -0.04 9.93 16 29 H 0.29 14.48 8.29 -92.71 -0.77 13.71 16 30 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 31 H 0.17 6.14 8.06 -2.91 -0.02 6.12 16 32 H 0.13 2.19 8.10 -2.39 -0.02 2.17 16 33 H 0.06 1.80 7.65 -2.38 -0.02 1.78 16 34 H 0.06 1.88 7.61 -2.39 -0.02 1.87 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.13 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -69.62 321.25 3.10 -66.52 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: 0.33 Total: 43.29 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 5.33 Total: -14.49 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.38 Total: -104.52 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.04 Total: -25.97 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.17 Total: -6.46 kcal Total: -69.62 3.10 -66.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584325672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.615 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds