Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99976 * 2 1 4 4 C 1.39562 * 119.64270 * 185.17209 * 3 2 1 5 5 C 1.38222 * 119.28722 * 179.97438 * 4 3 2 6 6 C 1.38862 * 118.58914 * 359.74978 * 5 4 3 7 7 C 1.39097 * 119.24119 * 0.49207 * 6 5 4 8 8 C 1.48152 * 119.68049 * 179.77006 * 7 6 5 9 9 O 1.21510 * 119.99726 * 5.14793 * 8 7 6 10 10 N 1.34775 * 119.99950 * 185.14035 * 8 7 6 11 11 C 1.46501 * 119.99998 * 184.92772 * 10 8 7 12 12 C 1.52993 * 109.47273 * 184.40254 * 11 10 8 13 13 C 1.50700 * 115.55377 * 54.33566 * 12 11 10 14 14 H 1.07992 * 120.00077 * 215.19930 * 13 12 11 15 15 C 1.37880 * 119.99411 * 35.20600 * 13 12 11 16 16 N 1.31515 * 119.99366 * 193.03899 * 15 13 12 17 17 Si 1.86799 * 120.00316 * 13.03823 * 15 13 12 18 18 H 1.48498 * 109.47068 * 273.74359 * 17 15 13 19 19 H 1.48500 * 109.47070 * 33.74465 * 17 15 13 20 20 H 1.48494 * 109.47033 * 153.74251 * 17 15 13 21 21 C 1.53004 * 117.49804 * 200.01309 * 12 11 10 22 22 C 1.53003 * 117.49710 * 268.66499 * 12 11 10 23 23 N 1.32122 * 119.64606 * 5.15433 * 3 2 1 24 24 H 1.09001 * 109.46725 * 304.81156 * 1 2 3 25 25 H 1.09000 * 109.47125 * 64.80662 * 1 2 3 26 26 H 1.08998 * 109.47095 * 184.81247 * 1 2 3 27 27 H 1.07999 * 120.35217 * 359.95519 * 4 3 2 28 28 H 1.07993 * 120.70489 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.38129 * 180.25097 * 6 5 4 30 30 H 0.96998 * 120.00304 * 4.92996 * 10 8 7 31 31 H 1.09005 * 109.46726 * 64.39650 * 11 10 8 32 32 H 1.09003 * 109.47128 * 304.40088 * 11 10 8 33 33 H 0.97004 * 119.99929 * 174.98571 * 16 15 13 34 34 H 1.08997 * 117.49698 * 215.00313 * 21 12 11 35 35 H 1.09006 * 117.49780 * 0.02562 * 21 12 11 36 36 H 1.08999 * 117.49926 * 359.97438 * 22 12 11 37 37 H 1.09001 * 117.49904 * 144.97228 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5427 2.1177 -0.1093 5 6 3.8453 3.4664 -0.1091 6 6 2.8053 4.3806 -0.0047 7 6 1.4995 3.9146 0.1064 8 6 0.3830 4.8814 0.2235 9 8 0.5990 6.0733 0.1285 10 7 -0.8723 4.4388 0.4353 11 6 -1.9909 5.3847 0.4436 12 6 -3.2798 4.6472 0.8117 13 6 -3.2363 3.8656 2.0994 14 1 -3.7734 2.9324 2.1830 15 6 -2.5110 4.3421 3.1708 16 7 -2.2579 3.5567 4.1949 17 14 -1.8878 6.1030 3.1678 18 1 -0.5779 6.1633 2.4709 19 1 -2.8640 6.9724 2.4631 20 1 -1.7261 6.5733 4.5670 21 6 -4.6058 5.3092 0.4315 22 6 -4.1186 4.0761 -0.3334 23 7 1.2430 2.6109 0.1032 24 1 -0.3633 0.5867 0.8438 25 1 -0.3633 0.4375 -0.9299 26 1 -0.3633 -1.0240 0.0862 27 1 4.3288 1.3819 -0.1929 28 1 4.8683 3.8020 -0.1929 29 1 3.0084 5.4413 -0.0056 30 1 -1.0351 3.4939 0.5824 31 1 -2.0970 5.8304 -0.5455 32 1 -1.7987 6.1683 1.1765 33 1 -1.6871 3.8674 4.9150 34 1 -5.4466 5.1794 1.1128 35 1 -4.5598 6.2699 -0.0814 36 1 -3.7524 4.2261 -1.3490 37 1 -4.6386 3.1348 -0.1555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592627945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = 34.690521 kcal Electronic energy + Delta-G solvation = -21201.307209 eV Core-core repulsion = 18071.149407 eV Total energy + Delta-G solvation = -3130.157801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38866 -38.71377 -36.99193 -33.65336 -32.57096 -32.26693 -31.45405 -28.74538 -27.26687 -25.44273 -24.05119 -23.62349 -21.54971 -20.38534 -19.43075 -18.19170 -17.08566 -16.64017 -16.15002 -15.85061 -15.56252 -15.02306 -14.76496 -14.30944 -13.95232 -13.80864 -13.58611 -13.18382 -13.11090 -12.89954 -12.53861 -12.39971 -12.07707 -11.99145 -11.02254 -10.73022 -10.66088 -10.49991 -10.17617 -10.06371 -10.00981 -9.73297 -9.69213 -9.40254 -9.30799 -8.97315 -8.45747 -8.24627 -7.60806 -6.23843 -4.20340 0.66396 1.06927 1.44685 2.25006 2.95518 3.30657 3.38200 3.41725 3.54404 3.93053 4.32336 4.36196 4.69014 4.82561 4.92866 5.01911 5.24265 5.29446 5.31567 5.38528 5.45436 5.60525 5.82772 5.85814 6.01633 6.02599 6.09582 6.14534 6.39391 6.43481 6.46760 6.60747 6.81343 7.01895 7.10988 7.52211 7.62317 8.16675 8.37482 8.68342 8.79099 9.39180 10.85299 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.005989 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.067375 B = 4674.454227 C = 5215.028843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.085 6.085 3 C 0.121 3.879 4 C -0.136 4.136 5 C -0.066 4.066 6 C -0.124 4.124 7 C 0.108 3.892 8 C 0.560 3.440 9 O -0.547 6.547 10 N -0.674 5.674 11 C 0.139 3.861 12 C -0.008 4.008 13 C -0.492 4.492 14 H 0.080 0.920 15 C 0.087 3.913 16 N -0.883 5.883 17 Si 0.876 3.124 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.300 1.300 21 C -0.200 4.200 22 C -0.186 4.186 23 N -0.458 5.458 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.420 0.580 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.267 0.733 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.204 -4.640 -9.584 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.154 5.846 3 C -0.130 4.130 4 C -0.162 4.162 5 C -0.093 4.093 6 C -0.147 4.147 7 C -0.033 4.033 8 C 0.344 3.656 9 O -0.426 6.426 10 N -0.323 5.323 11 C 0.017 3.983 12 C -0.009 4.009 13 C -0.528 4.528 14 H 0.098 0.902 15 C -0.118 4.118 16 N -0.518 5.518 17 Si 0.707 3.293 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.228 1.228 21 C -0.239 4.239 22 C -0.223 4.223 23 N -0.173 5.173 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.258 0.742 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.081 -5.121 -9.356 14.676 hybrid contribution 0.233 1.902 0.188 1.926 sum 10.314 -3.219 -9.168 14.171 Atomic orbital electron populations 1.23537 0.92313 1.06504 1.07576 1.85292 1.09344 0.98450 1.91560 1.23071 0.91974 0.98425 0.99521 1.21813 0.95773 0.97009 1.01605 1.21489 0.99815 0.92200 0.95839 1.22084 0.91930 1.02119 0.98615 1.21267 0.93854 0.90004 0.98220 1.17831 0.82744 0.87021 0.78051 1.90733 1.83993 1.15533 1.52315 1.45744 1.05071 1.13335 1.68196 1.21264 0.85722 0.91553 0.99792 1.19535 0.86919 0.98580 0.95873 1.20251 1.32530 1.07082 0.92984 0.90203 1.24928 0.94898 0.97010 0.94922 1.69869 1.35619 1.36059 1.10249 0.87125 0.80592 0.85870 0.75707 1.18957 1.19263 1.22841 1.23115 1.01576 0.94920 1.04278 1.22832 1.06518 0.97535 0.95441 1.67990 1.35092 1.01661 1.12560 0.88056 0.89525 0.87842 0.83992 0.83692 0.83312 0.74226 0.92604 0.91890 0.92295 0.89299 0.91190 0.90874 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 10.04 101.05 1.01 -0.59 16 2 S -0.09 -1.06 22.55 -107.50 -2.42 -3.48 16 3 C 0.12 1.75 7.00 -16.93 -0.12 1.63 16 4 C -0.14 -1.59 9.84 -39.09 -0.38 -1.97 16 5 C -0.07 -0.74 10.16 -39.36 -0.40 -1.14 16 6 C -0.12 -1.80 9.62 -39.03 -0.38 -2.17 16 7 C 0.11 1.92 6.74 -83.03 -0.56 1.36 16 8 C 0.56 11.73 7.26 -12.19 -0.09 11.64 16 9 O -0.55 -12.53 15.97 5.36 0.09 -12.44 16 10 N -0.67 -14.44 4.77 -61.15 -0.29 -14.73 16 11 C 0.14 3.09 4.40 -4.05 -0.02 3.07 16 12 C -0.01 -0.18 1.46 -155.66 -0.23 -0.40 16 13 C -0.49 -12.98 8.94 -34.44 -0.31 -13.28 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 15 C 0.09 2.41 5.33 -17.82 -0.10 2.32 16 16 N -0.88 -25.76 13.95 55.43 0.77 -24.99 16 17 Si 0.88 22.30 23.74 -169.99 -4.04 18.26 16 18 H -0.26 -6.83 5.79 56.52 0.33 -6.50 16 19 H -0.27 -6.61 6.96 56.52 0.39 -6.22 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 C -0.20 -4.07 9.96 -26.70 -0.27 -4.34 16 22 C -0.19 -3.60 9.92 -26.70 -0.26 -3.86 16 23 N -0.46 -7.77 8.60 -8.66 -0.07 -7.84 16 24 H 0.10 1.49 8.08 -51.92 -0.42 1.07 16 25 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.15 2.05 7.64 -52.49 -0.40 1.65 16 30 H 0.42 8.95 7.46 -40.82 -0.30 8.65 16 31 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 32 H 0.06 1.53 2.72 -51.93 -0.14 1.39 16 33 H 0.27 7.47 8.32 -40.82 -0.34 7.13 16 34 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -30.80 325.46 -7.86 -38.66 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.71 Total: 9.41 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.09 Total: -7.75 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.41 Total: -47.57 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.04 Total: 18.26 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.42 Total: -3.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.80 -7.86 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592627945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.350 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds