Wall clock time and date at job start Tue Mar 31 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99976 * 2 1 4 4 C 1.39562 * 119.64270 * 185.17209 * 3 2 1 5 5 C 1.38222 * 119.28722 * 179.97438 * 4 3 2 6 6 C 1.38862 * 118.58914 * 359.74978 * 5 4 3 7 7 C 1.39097 * 119.24119 * 0.49207 * 6 5 4 8 8 C 1.48152 * 119.68049 * 179.77006 * 7 6 5 9 9 O 1.21510 * 119.99726 * 5.14793 * 8 7 6 10 10 N 1.34775 * 119.99950 * 185.14035 * 8 7 6 11 11 C 1.46501 * 119.99998 * 184.92772 * 10 8 7 12 12 C 1.52993 * 109.47273 * 184.40254 * 11 10 8 13 13 C 1.50700 * 115.55377 * 54.33566 * 12 11 10 14 14 H 1.07992 * 120.00077 * 215.19930 * 13 12 11 15 15 C 1.37880 * 119.99411 * 35.20600 * 13 12 11 16 16 N 1.31515 * 119.99366 * 193.03899 * 15 13 12 17 17 Si 1.86799 * 120.00316 * 13.03823 * 15 13 12 18 18 H 1.48498 * 109.47068 * 273.74359 * 17 15 13 19 19 H 1.48500 * 109.47070 * 33.74465 * 17 15 13 20 20 H 1.48494 * 109.47033 * 153.74251 * 17 15 13 21 21 C 1.53004 * 117.49804 * 200.01309 * 12 11 10 22 22 C 1.53003 * 117.49710 * 268.66499 * 12 11 10 23 23 N 1.32122 * 119.64606 * 5.15433 * 3 2 1 24 24 H 1.09001 * 109.46725 * 304.81156 * 1 2 3 25 25 H 1.09000 * 109.47125 * 64.80662 * 1 2 3 26 26 H 1.08998 * 109.47095 * 184.81247 * 1 2 3 27 27 H 1.07999 * 120.35217 * 359.95519 * 4 3 2 28 28 H 1.07993 * 120.70489 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.38129 * 180.25097 * 6 5 4 30 30 H 0.96998 * 120.00304 * 4.92996 * 10 8 7 31 31 H 1.09005 * 109.46726 * 64.39650 * 11 10 8 32 32 H 1.09003 * 109.47128 * 304.40088 * 11 10 8 33 33 H 0.97004 * 119.99929 * 174.98571 * 16 15 13 34 34 H 1.08997 * 117.49698 * 215.00313 * 21 12 11 35 35 H 1.09006 * 117.49780 * 0.02562 * 21 12 11 36 36 H 1.08999 * 117.49926 * 359.97438 * 22 12 11 37 37 H 1.09001 * 117.49904 * 144.97228 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5427 2.1177 -0.1093 5 6 3.8453 3.4664 -0.1091 6 6 2.8053 4.3806 -0.0047 7 6 1.4995 3.9146 0.1064 8 6 0.3830 4.8814 0.2235 9 8 0.5990 6.0733 0.1285 10 7 -0.8723 4.4388 0.4353 11 6 -1.9909 5.3847 0.4436 12 6 -3.2798 4.6472 0.8117 13 6 -3.2363 3.8656 2.0994 14 1 -3.7734 2.9324 2.1830 15 6 -2.5110 4.3421 3.1708 16 7 -2.2579 3.5567 4.1949 17 14 -1.8878 6.1030 3.1678 18 1 -0.5779 6.1633 2.4709 19 1 -2.8640 6.9724 2.4631 20 1 -1.7261 6.5733 4.5670 21 6 -4.6058 5.3092 0.4315 22 6 -4.1186 4.0761 -0.3334 23 7 1.2430 2.6109 0.1032 24 1 -0.3633 0.5867 0.8438 25 1 -0.3633 0.4375 -0.9299 26 1 -0.3633 -1.0240 0.0862 27 1 4.3288 1.3819 -0.1929 28 1 4.8683 3.8020 -0.1929 29 1 3.0084 5.4413 -0.0056 30 1 -1.0351 3.4939 0.5824 31 1 -2.0970 5.8304 -0.5455 32 1 -1.7987 6.1683 1.1765 33 1 -1.6871 3.8674 4.9150 34 1 -5.4466 5.1794 1.1128 35 1 -4.5598 6.2699 -0.0814 36 1 -3.7524 4.2261 -1.3490 37 1 -4.6386 3.1348 -0.1555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592627945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:36 Heat of formation + Delta-G solvation = 14.083308 kcal Electronic energy + Delta-G solvation = -21202.200804 eV Core-core repulsion = 18071.149407 eV Total energy + Delta-G solvation = -3131.051397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65584 -40.18052 -38.69586 -35.23288 -34.38495 -33.68190 -32.60341 -29.74987 -28.95836 -27.35563 -25.30981 -24.74463 -23.15189 -21.82494 -21.23769 -19.64329 -18.42197 -18.32837 -17.64082 -17.14704 -16.89698 -16.59258 -16.29166 -15.65185 -15.32018 -15.21859 -15.01865 -14.77600 -14.42410 -14.28796 -14.03867 -13.93030 -13.51504 -13.03530 -12.97852 -12.56398 -12.18487 -11.97072 -11.89530 -11.56997 -11.34785 -11.22799 -11.19897 -10.85686 -10.78816 -10.68773 -10.43518 -9.95763 -8.60935 -8.39630 -6.34686 -0.47853 0.04458 0.45099 1.22718 1.24649 1.32467 1.34128 1.59575 2.06267 2.22280 2.67967 2.80959 3.14688 3.43284 3.78098 3.89967 3.92816 4.00073 4.11965 4.19920 4.33094 4.36234 4.37669 4.39364 4.43916 4.72233 4.89575 4.89777 4.92579 4.99137 5.02667 5.18511 5.37787 5.42654 5.50356 5.61912 6.23457 6.30414 6.59785 6.67600 7.06913 7.25643 8.73194 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015355 B = 0.005989 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.067375 B = 4674.454227 C = 5215.028843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.059 6.059 3 C 0.095 3.905 4 C -0.121 4.121 5 C -0.050 4.050 6 C -0.125 4.125 7 C 0.070 3.930 8 C 0.555 3.445 9 O -0.576 6.576 10 N -0.680 5.680 11 C 0.143 3.857 12 C -0.041 4.041 13 C -0.479 4.479 14 H 0.049 0.951 15 C 0.048 3.952 16 N -0.926 5.926 17 Si 0.926 3.074 18 H -0.275 1.275 19 H -0.255 1.255 20 H -0.309 1.309 21 C -0.189 4.189 22 C -0.160 4.160 23 N -0.482 5.482 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.180 0.820 28 H 0.194 0.806 29 H 0.152 0.848 30 H 0.417 0.583 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.782 -4.889 -11.533 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.179 5.821 3 C -0.156 4.156 4 C -0.146 4.146 5 C -0.077 4.077 6 C -0.149 4.149 7 C -0.070 4.070 8 C 0.341 3.659 9 O -0.456 6.456 10 N -0.328 5.328 11 C 0.020 3.980 12 C -0.043 4.043 13 C -0.516 4.516 14 H 0.067 0.933 15 C -0.152 4.152 16 N -0.564 5.564 17 Si 0.757 3.243 18 H -0.202 1.202 19 H -0.180 1.180 20 H -0.238 1.238 21 C -0.227 4.227 22 C -0.197 4.197 23 N -0.198 5.198 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.145 0.855 27 H 0.197 0.803 28 H 0.211 0.789 29 H 0.169 0.831 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.639 -5.360 -11.327 17.102 hybrid contribution -0.234 1.850 0.721 1.999 sum 11.405 -3.510 -10.606 15.964 Atomic orbital electron populations 1.23529 0.92916 1.07438 1.06183 1.85103 1.08675 0.96987 1.91317 1.23623 0.93070 0.98923 1.00010 1.22325 0.95347 0.98169 0.98777 1.21998 1.01005 0.91266 0.93386 1.22284 0.91513 1.03071 0.98060 1.20965 0.93895 0.90055 1.02056 1.18376 0.83221 0.87413 0.76882 1.90687 1.84490 1.16814 1.53646 1.45773 1.05451 1.12995 1.68620 1.21181 0.85669 0.91149 1.00035 1.19461 0.88440 1.00701 0.95655 1.20371 1.30757 1.06016 0.94476 0.93273 1.25391 0.95741 0.99169 0.94905 1.69967 1.37603 1.37489 1.11335 0.86336 0.79866 0.83327 0.74737 1.20190 1.17992 1.23838 1.23147 0.99105 0.96528 1.03954 1.22878 1.03965 0.97276 0.95558 1.67854 1.36637 1.01700 1.13585 0.91037 0.89563 0.85476 0.80258 0.78880 0.83059 0.74544 0.90669 0.94083 0.92590 0.89714 0.88744 0.88172 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 10.04 113.37 1.14 -2.09 16 2 S -0.06 -1.38 22.55 -56.49 -1.27 -2.66 16 3 C 0.10 2.60 7.00 84.97 0.59 3.20 16 4 C -0.12 -2.40 9.84 22.59 0.22 -2.17 16 5 C -0.05 -0.93 10.16 22.42 0.23 -0.70 16 6 C -0.13 -3.46 9.62 22.63 0.22 -3.25 16 7 C 0.07 2.50 6.74 41.83 0.28 2.78 16 8 C 0.56 23.66 7.26 86.88 0.63 24.29 16 9 O -0.58 -26.73 15.97 -3.75 -0.06 -26.79 16 10 N -0.68 -29.57 4.77 -465.69 -2.22 -31.79 16 11 C 0.14 6.26 4.40 86.38 0.38 6.64 16 12 C -0.04 -1.84 1.46 -52.93 -0.08 -1.91 16 13 C -0.48 -25.78 8.94 25.60 0.23 -25.55 16 14 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 15 C 0.05 2.74 5.33 84.66 0.45 3.19 16 16 N -0.93 -56.04 13.95 21.45 0.30 -55.74 16 17 Si 0.93 47.41 23.74 68.60 1.63 49.04 16 18 H -0.28 -14.50 5.79 99.48 0.58 -13.92 16 19 H -0.25 -12.33 6.96 99.48 0.69 -11.64 16 20 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 21 C -0.19 -7.24 9.96 30.62 0.30 -6.94 16 22 C -0.16 -5.82 9.92 30.62 0.30 -5.52 16 23 N -0.48 -16.36 8.60 -181.32 -1.56 -17.91 16 24 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.15 4.01 7.64 -2.91 -0.02 3.99 16 30 H 0.42 18.39 7.46 -92.71 -0.69 17.70 16 31 H 0.08 2.96 8.09 -2.38 -0.02 2.94 16 32 H 0.04 1.99 2.72 -2.39 -0.01 1.99 16 33 H 0.26 15.43 8.32 -92.70 -0.77 14.65 16 34 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -69.43 325.46 1.98 -67.46 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.26 Total: 26.43 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.91 Total: -8.03 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.48 Total: -105.45 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.63 Total: 49.04 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -1.27 Total: -2.66 kcal Total: -69.43 1.98 -67.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592627945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.539 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds