Wall clock time and date at job start Tue Mar 31 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 120.00056 * 2 1 4 4 H 1.08004 * 119.99888 * 203.04864 * 3 2 1 5 5 C 1.38814 * 119.99913 * 23.04442 * 3 2 1 6 6 N 1.31617 * 120.00037 * 12.93085 * 5 3 2 7 7 Si 1.86800 * 119.99750 * 192.92918 * 5 3 2 8 8 H 1.48507 * 109.47286 * 90.00475 * 7 5 3 9 9 H 1.48501 * 109.46937 * 209.99780 * 7 5 3 10 10 H 1.48495 * 109.47689 * 330.00008 * 7 5 3 11 11 C 1.46505 * 119.99848 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46752 * 90.00034 * 11 2 1 13 13 C 1.53002 * 109.46928 * 180.02562 * 12 11 2 14 14 H 1.09000 * 109.61048 * 55.33497 * 13 12 11 15 15 S 1.81810 * 109.60793 * 295.00081 * 13 12 11 16 16 C 1.76536 * 101.76062 * 285.30669 * 15 13 12 17 17 C 1.38589 * 120.00083 * 150.10811 * 16 15 13 18 18 C 1.38257 * 119.92853 * 179.60647 * 17 16 15 19 19 C 1.38302 * 119.89403 * 0.08498 * 18 17 16 20 20 C 1.38071 * 120.42198 * 359.67252 * 19 18 17 21 21 C 1.39158 * 120.29286 * 0.60683 * 20 19 18 22 22 N 1.39215 * 119.10390 * 179.03064 * 21 20 19 23 23 C 1.32967 * 126.21213 * 197.47909 * 22 21 20 24 24 O 1.21305 * 118.48679 * 185.64177 * 23 22 21 25 25 H 1.08998 * 109.47033 * 275.12212 * 1 2 3 26 26 H 1.08997 * 109.47166 * 35.12609 * 1 2 3 27 27 H 1.09004 * 109.47006 * 155.12354 * 1 2 3 28 28 H 0.97000 * 119.99836 * 179.97438 * 6 5 3 29 29 H 1.08991 * 109.47018 * 330.00218 * 11 2 1 30 30 H 1.08996 * 109.47010 * 209.99721 * 11 2 1 31 31 H 1.08996 * 109.47671 * 60.00272 * 12 11 2 32 32 H 1.08996 * 109.47108 * 299.99628 * 12 11 2 33 33 H 1.07996 * 120.03319 * 359.58175 * 17 16 15 34 34 H 1.07992 * 120.05167 * 179.80135 * 18 17 16 35 35 H 1.07997 * 119.78645 * 179.91727 * 19 18 17 36 36 H 1.08000 * 119.85106 * 180.36390 * 20 19 18 37 37 H 0.97003 * 116.89360 * 17.45582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3400 0.4706 6 7 0.4118 2.2597 1.1458 7 14 2.3159 4.0073 0.1455 8 1 1.7987 4.5534 -1.1350 9 1 1.9759 4.9363 1.2530 10 1 3.7909 3.8578 0.0601 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2169 -3.0364 -1.4412 14 1 2.6680 -3.7750 -0.8570 15 16 4.8662 -2.7892 -0.7173 16 6 5.7086 -1.9471 -2.0203 17 6 6.7227 -1.0502 -1.7240 18 6 7.3869 -0.3977 -2.7460 19 6 7.0361 -0.6406 -4.0615 20 6 6.0299 -1.5369 -4.3627 21 6 5.3491 -2.1964 -3.3439 22 7 4.3252 -3.0796 -3.6749 23 6 3.3806 -3.5301 -2.8547 24 8 2.6156 -4.3781 -3.2635 25 1 -0.3633 0.0917 1.0235 26 1 -0.3633 0.8405 -0.5913 27 1 -0.3633 -0.9324 -0.4323 28 1 -0.0149 3.0662 1.4750 29 1 1.6084 -2.0281 0.5147 30 1 3.1499 -1.1382 0.5143 31 1 3.0416 -0.9517 -1.9560 32 1 1.5001 -1.8416 -1.9555 33 1 6.9935 -0.8610 -0.6958 34 1 8.1752 0.3040 -2.5172 35 1 7.5552 -0.1289 -4.8584 36 1 5.7675 -1.7240 -5.3935 37 1 4.2982 -3.3963 -4.5914 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595307017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:50 Heat of formation + Delta-G solvation = 18.125430 kcal Electronic energy + Delta-G solvation = -21050.532838 eV Core-core repulsion = 17919.656721 eV Total energy + Delta-G solvation = -3130.876117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80431 -38.91166 -36.08644 -35.35754 -33.30051 -31.26771 -30.71955 -29.68577 -27.01827 -25.78084 -23.72370 -23.04078 -22.62324 -20.36800 -20.34817 -18.25712 -17.72485 -17.26752 -16.60718 -15.68005 -15.32727 -14.89221 -14.68552 -14.66330 -14.27675 -13.91633 -13.64138 -13.23183 -13.10159 -12.80139 -12.55055 -11.95534 -11.71861 -11.40321 -11.19243 -11.06531 -10.90881 -10.80680 -10.71959 -10.50403 -10.16579 -10.09990 -9.87923 -9.82602 -9.46555 -8.53618 -8.44673 -7.43557 -6.72311 -5.69942 -3.17069 0.80478 1.07879 1.45614 2.10619 2.51325 2.78331 3.38745 3.44904 3.46419 3.54935 4.07416 4.49827 4.52440 4.79721 4.87115 5.06478 5.12394 5.19458 5.37717 5.44855 5.66150 5.76234 5.77264 5.84943 6.07590 6.09166 6.30096 6.32303 6.36957 6.58879 6.66917 6.76158 6.92382 6.99975 7.39089 7.69518 7.75092 7.83388 8.42241 9.26129 9.89348 10.38468 11.34953 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.005800 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.035778 B = 4826.815471 C = 5972.765201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.154 3.846 12 C -0.127 4.127 13 C -0.089 4.089 14 H 0.147 0.853 15 S -0.082 6.082 16 C -0.123 4.123 17 C -0.055 4.055 18 C -0.129 4.129 19 C -0.086 4.086 20 C -0.145 4.145 21 C 0.162 3.838 22 N -0.654 5.654 23 C 0.533 3.467 24 O -0.520 6.520 25 H 0.032 0.968 26 H 0.040 0.960 27 H -0.003 1.003 28 H 0.252 0.748 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.012 -8.780 -9.121 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.382 4.382 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.025 3.975 12 C -0.169 4.169 13 C -0.221 4.221 14 H 0.165 0.835 15 S 0.161 5.839 16 C -0.238 4.238 17 C -0.078 4.078 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.167 4.167 21 C 0.061 3.939 22 N -0.297 5.297 23 C 0.318 3.682 24 O -0.395 6.395 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.700 -9.466 -7.817 17.663 hybrid contribution -0.143 1.309 -1.874 2.290 sum 12.556 -8.157 -9.690 17.836 Atomic orbital electron populations 1.20816 0.82674 0.95346 0.99548 1.43865 1.01790 1.00596 1.85894 1.19183 0.98226 0.85525 1.35299 0.91413 1.25016 0.97907 0.98472 0.98230 1.70069 1.19477 1.27120 1.38614 0.86282 0.78836 0.84270 0.77357 1.21617 1.21721 1.20392 1.20769 0.97124 0.88632 0.90950 1.22579 0.99141 0.90628 1.04598 1.23884 0.98359 1.05229 0.94629 0.83511 1.85731 1.06705 1.70119 1.21347 1.21347 1.03382 1.05231 0.93877 1.20845 0.93892 0.92729 1.00333 1.21134 1.00892 1.00589 0.92370 1.20969 0.96164 0.96590 0.96942 1.20821 0.98981 0.99063 0.97817 1.17510 0.90486 0.92833 0.93106 1.42988 1.26636 1.44711 1.15320 1.20048 0.79487 0.81067 0.87588 1.90796 1.42304 1.30518 1.75922 0.94933 0.94161 0.98425 0.93785 0.94454 0.91733 0.91264 0.91087 0.84464 0.85062 0.85235 0.85258 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.85 0.54 4.57 16 2 N -0.60 -15.18 2.92 -181.12 -0.53 -15.71 16 3 C -0.25 -6.96 9.65 -15.06 -0.15 -7.10 16 4 H 0.07 1.83 7.86 -52.48 -0.41 1.42 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.70 10.71 55.49 0.59 -26.10 16 7 Si 0.90 21.92 29.57 -169.99 -5.03 16.89 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.15 3.14 5.47 -4.04 -0.02 3.12 16 12 C -0.13 -2.27 4.98 -26.73 -0.13 -2.41 16 13 C -0.09 -1.35 2.80 -27.92 -0.08 -1.43 16 14 H 0.15 2.08 8.13 -51.93 -0.42 1.66 16 15 S -0.08 -1.17 20.47 -107.50 -2.20 -3.37 16 16 C -0.12 -1.68 5.75 -39.02 -0.22 -1.90 16 17 C -0.05 -0.66 9.78 -39.45 -0.39 -1.05 16 18 C -0.13 -1.30 10.06 -39.55 -0.40 -1.70 16 19 C -0.09 -0.80 10.02 -39.62 -0.40 -1.20 16 20 C -0.14 -1.47 9.79 -39.30 -0.38 -1.86 16 21 C 0.16 2.04 6.58 -83.74 -0.55 1.49 16 22 N -0.65 -8.33 5.08 -10.26 -0.05 -8.38 16 23 C 0.53 8.09 6.86 -11.83 -0.08 8.01 16 24 O -0.52 -9.11 17.78 5.54 0.10 -9.02 16 25 H 0.03 0.88 7.34 -51.93 -0.38 0.49 16 26 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 27 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.06 1.33 7.04 -51.93 -0.37 0.96 16 31 H 0.07 1.35 7.92 -51.93 -0.41 0.94 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.41 4.24 8.54 -40.82 -0.35 3.90 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -32.11 322.64 -9.41 -41.52 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.81 Total: 0.79 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.35 Total: -1.49 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.01 Total: -50.19 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.10 Total: -9.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.20 Total: -3.37 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.11 -9.41 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.649 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds