Wall clock time and date at job start Tue Mar 31 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36931 * 120.00056 * 2 1 4 4 H 1.08004 * 119.99888 * 203.04864 * 3 2 1 5 5 C 1.38814 * 119.99913 * 23.04442 * 3 2 1 6 6 N 1.31617 * 120.00037 * 12.93085 * 5 3 2 7 7 Si 1.86800 * 119.99750 * 192.92918 * 5 3 2 8 8 H 1.48507 * 109.47286 * 90.00475 * 7 5 3 9 9 H 1.48501 * 109.46937 * 209.99780 * 7 5 3 10 10 H 1.48495 * 109.47689 * 330.00008 * 7 5 3 11 11 C 1.46505 * 119.99848 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46752 * 90.00034 * 11 2 1 13 13 C 1.53002 * 109.46928 * 180.02562 * 12 11 2 14 14 H 1.09000 * 109.61048 * 55.33497 * 13 12 11 15 15 S 1.81810 * 109.60793 * 295.00081 * 13 12 11 16 16 C 1.76536 * 101.76062 * 285.30669 * 15 13 12 17 17 C 1.38589 * 120.00083 * 150.10811 * 16 15 13 18 18 C 1.38257 * 119.92853 * 179.60647 * 17 16 15 19 19 C 1.38302 * 119.89403 * 0.08498 * 18 17 16 20 20 C 1.38071 * 120.42198 * 359.67252 * 19 18 17 21 21 C 1.39158 * 120.29286 * 0.60683 * 20 19 18 22 22 N 1.39215 * 119.10390 * 179.03064 * 21 20 19 23 23 C 1.32967 * 126.21213 * 197.47909 * 22 21 20 24 24 O 1.21305 * 118.48679 * 185.64177 * 23 22 21 25 25 H 1.08998 * 109.47033 * 275.12212 * 1 2 3 26 26 H 1.08997 * 109.47166 * 35.12609 * 1 2 3 27 27 H 1.09004 * 109.47006 * 155.12354 * 1 2 3 28 28 H 0.97000 * 119.99836 * 179.97438 * 6 5 3 29 29 H 1.08991 * 109.47018 * 330.00218 * 11 2 1 30 30 H 1.08996 * 109.47010 * 209.99721 * 11 2 1 31 31 H 1.08996 * 109.47671 * 60.00272 * 12 11 2 32 32 H 1.08996 * 109.47108 * 299.99628 * 12 11 2 33 33 H 1.07996 * 120.03319 * 359.58175 * 17 16 15 34 34 H 1.07992 * 120.05167 * 179.80135 * 18 17 16 35 35 H 1.07997 * 119.78645 * 179.91727 * 19 18 17 36 36 H 1.08000 * 119.85106 * 180.36390 * 20 19 18 37 37 H 0.97003 * 116.89360 * 17.45582 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3400 0.4706 6 7 0.4118 2.2597 1.1458 7 14 2.3159 4.0073 0.1455 8 1 1.7987 4.5534 -1.1350 9 1 1.9759 4.9363 1.2530 10 1 3.7909 3.8578 0.0601 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2169 -3.0364 -1.4412 14 1 2.6680 -3.7750 -0.8570 15 16 4.8662 -2.7892 -0.7173 16 6 5.7086 -1.9471 -2.0203 17 6 6.7227 -1.0502 -1.7240 18 6 7.3869 -0.3977 -2.7460 19 6 7.0361 -0.6406 -4.0615 20 6 6.0299 -1.5369 -4.3627 21 6 5.3491 -2.1964 -3.3439 22 7 4.3252 -3.0796 -3.6749 23 6 3.3806 -3.5301 -2.8547 24 8 2.6156 -4.3781 -3.2635 25 1 -0.3633 0.0917 1.0235 26 1 -0.3633 0.8405 -0.5913 27 1 -0.3633 -0.9324 -0.4323 28 1 -0.0149 3.0662 1.4750 29 1 1.6084 -2.0281 0.5147 30 1 3.1499 -1.1382 0.5143 31 1 3.0416 -0.9517 -1.9560 32 1 1.5001 -1.8416 -1.9555 33 1 6.9935 -0.8610 -0.6958 34 1 8.1752 0.3040 -2.5172 35 1 7.5552 -0.1289 -4.8584 36 1 5.7675 -1.7240 -5.3935 37 1 4.2982 -3.3963 -4.5914 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595307017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:49 Heat of formation + Delta-G solvation = -1.005531 kcal Electronic energy + Delta-G solvation = -21051.362419 eV Core-core repulsion = 17919.656721 eV Total energy + Delta-G solvation = -3131.705698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.88715 -39.87978 -37.91250 -36.39837 -34.95746 -32.72661 -32.03143 -30.60163 -28.61676 -27.84805 -25.01901 -24.12033 -23.82021 -22.16721 -21.42753 -19.26148 -18.95292 -18.51894 -18.25090 -16.97167 -16.81184 -16.25889 -15.98431 -15.63364 -15.53133 -15.31663 -14.88215 -14.75616 -14.51676 -14.22753 -13.96005 -13.37678 -13.10254 -12.82611 -12.67156 -12.62864 -12.46175 -12.35866 -12.15452 -12.04464 -11.89463 -11.80689 -11.57594 -11.16207 -10.67242 -10.47377 -9.36578 -8.81481 -8.48511 -7.81551 -5.31521 -0.18503 0.21338 0.43386 1.05156 1.35604 1.46739 1.47641 1.56872 1.76703 2.51266 2.70488 2.94408 3.31683 3.42960 3.66677 3.85273 4.04607 4.07224 4.25669 4.34477 4.41034 4.49963 4.50158 4.72950 4.82260 4.86956 4.94777 5.04950 5.18601 5.30404 5.38417 5.41700 5.50880 5.63749 5.69490 5.75335 6.00743 6.33535 6.60818 7.15596 7.86647 8.31255 9.21865 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.005800 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.035778 B = 4826.815471 C = 5972.765201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.617 5.617 3 C -0.258 4.258 4 H 0.070 0.930 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.966 3.034 8 H -0.288 1.288 9 H -0.295 1.295 10 H -0.264 1.264 11 C 0.154 3.846 12 C -0.105 4.105 13 C -0.087 4.087 14 H 0.155 0.845 15 S -0.092 6.092 16 C -0.148 4.148 17 C -0.073 4.073 18 C -0.126 4.126 19 C -0.081 4.081 20 C -0.140 4.140 21 C 0.140 3.860 22 N -0.644 5.644 23 C 0.534 3.466 24 O -0.549 6.549 25 H 0.008 0.992 26 H 0.014 0.986 27 H 0.028 0.972 28 H 0.248 0.752 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.200 -8.331 -10.853 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.340 5.340 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.794 3.206 8 H -0.215 1.215 9 H -0.221 1.221 10 H -0.188 1.188 11 C 0.027 3.973 12 C -0.147 4.147 13 C -0.219 4.219 14 H 0.173 0.827 15 S 0.150 5.850 16 C -0.263 4.263 17 C -0.096 4.096 18 C -0.146 4.146 19 C -0.101 4.101 20 C -0.162 4.162 21 C 0.040 3.960 22 N -0.286 5.286 23 C 0.319 3.681 24 O -0.428 6.428 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 14.949 -9.031 -9.579 19.920 hybrid contribution -0.681 1.170 -1.378 1.932 sum 14.268 -7.862 -10.957 19.633 Atomic orbital electron populations 1.20561 0.82951 0.95750 0.97782 1.44104 1.01999 1.01699 1.86151 1.19473 0.98363 0.86592 1.34376 0.91223 1.25796 0.98654 1.01888 0.98514 1.70234 1.20925 1.27576 1.39969 0.85279 0.78726 0.79851 0.76747 1.21520 1.22115 1.18834 1.20877 0.96655 0.87084 0.92657 1.22153 0.98852 0.91686 1.02044 1.23733 0.98904 1.03758 0.95465 0.82719 1.85700 1.06023 1.70833 1.22431 1.21511 1.04377 1.06451 0.93914 1.21058 0.94128 0.93087 1.01298 1.21531 1.00754 1.00042 0.92273 1.21450 0.95352 0.95663 0.97608 1.21227 0.98277 0.98116 0.98581 1.17748 0.91055 0.93761 0.93485 1.42837 1.26014 1.44248 1.15516 1.19924 0.79689 0.80913 0.87552 1.90781 1.43641 1.31967 1.76368 0.97399 0.96725 0.95348 0.94308 0.93157 0.91950 0.92866 0.91897 0.84328 0.82417 0.81689 0.82474 0.74019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.87 8.98 127.77 1.15 10.01 16 2 N -0.62 -31.38 2.92 -726.94 -2.12 -33.50 16 3 C -0.26 -14.22 9.65 84.03 0.81 -13.41 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.72 16 5 C -0.05 -3.03 5.10 84.86 0.43 -2.60 16 6 N -0.94 -56.31 10.71 21.65 0.23 -56.07 16 7 Si 0.97 45.02 29.57 68.60 2.03 47.05 16 8 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 C 0.15 6.27 5.47 86.38 0.47 6.74 16 12 C -0.11 -3.73 4.98 30.60 0.15 -3.58 16 13 C -0.09 -2.60 2.80 29.82 0.08 -2.51 16 14 H 0.16 4.33 8.13 -2.39 -0.02 4.31 16 15 S -0.09 -2.62 20.47 -56.49 -1.16 -3.77 16 16 C -0.15 -3.86 5.75 22.63 0.13 -3.73 16 17 C -0.07 -1.64 9.78 22.36 0.22 -1.42 16 18 C -0.13 -2.11 10.06 22.29 0.22 -1.89 16 19 C -0.08 -1.17 10.02 22.25 0.22 -0.95 16 20 C -0.14 -2.39 9.79 22.45 0.22 -2.17 16 21 C 0.14 3.28 6.58 38.47 0.25 3.53 16 22 N -0.64 -15.57 5.08 -305.76 -1.55 -17.12 16 23 C 0.53 15.91 6.86 87.91 0.60 16.52 16 24 O -0.55 -19.07 17.78 -3.11 -0.06 -19.13 16 25 H 0.01 0.43 7.34 -2.39 -0.02 0.41 16 26 H 0.01 0.78 7.34 -2.39 -0.02 0.76 16 27 H 0.03 1.23 8.03 -2.38 -0.02 1.21 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 30 H 0.06 2.57 7.04 -2.39 -0.02 2.55 16 31 H 0.05 2.05 7.92 -2.39 -0.02 2.04 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.42 8.04 8.54 -92.71 -0.79 7.25 16 Total: -1.00 -69.49 322.64 2.64 -66.86 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.29 Total: 11.14 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 4.97 Total: 4.55 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.45 Total: -106.69 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -1.16 Total: -3.77 kcal Total: -69.49 2.64 -66.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.852 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds