Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00484 * 2 1 4 4 C 1.53003 * 109.47296 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47126 * 64.99729 * 4 3 2 6 6 C 1.36940 * 120.00081 * 264.43092 * 5 4 3 7 7 H 1.08003 * 119.99595 * 146.10163 * 6 5 4 8 8 C 1.38811 * 120.00121 * 326.10176 * 6 5 4 9 9 N 1.31619 * 119.99725 * 337.68786 * 8 6 5 10 10 Si 1.86799 * 119.99944 * 157.69362 * 8 6 5 11 11 H 1.48496 * 109.46908 * 89.99964 * 10 8 6 12 12 H 1.48502 * 109.46965 * 209.99666 * 10 8 6 13 13 H 1.48497 * 109.46946 * 329.99794 * 10 8 6 14 14 C 1.46503 * 119.99718 * 84.43314 * 5 4 3 15 15 C 1.50695 * 109.46866 * 89.99995 * 14 5 4 16 16 N 1.28735 * 121.08534 * 269.71216 * 15 14 5 17 17 S 1.69392 * 108.98666 * 179.90499 * 16 15 14 18 18 C 1.76512 * 96.11772 * 0.31545 * 17 16 15 19 19 C 1.38792 * 133.55309 * 179.83535 * 18 17 16 20 20 C 1.36716 * 119.75358 * 179.97438 * 19 18 17 21 21 C 1.38975 * 120.15319 * 0.02562 * 20 19 18 22 22 C 1.36042 * 121.16053 * 0.02562 * 21 20 19 23 23 C 1.40806 * 105.52004 * 359.82645 * 18 17 16 24 24 H 1.08995 * 109.47357 * 59.99401 * 1 2 3 25 25 H 1.09003 * 109.47697 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47036 * 299.99805 * 1 2 3 27 27 H 1.09001 * 109.46815 * 60.00301 * 3 2 1 28 28 H 1.08998 * 109.47129 * 300.00153 * 3 2 1 29 29 H 1.09000 * 109.46736 * 304.99985 * 4 3 2 30 30 H 1.08994 * 109.47295 * 184.99980 * 4 3 2 31 31 H 0.97002 * 120.00039 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47201 * 330.00130 * 14 5 4 33 33 H 1.09001 * 109.46731 * 209.99819 * 14 5 4 34 34 H 1.08000 * 120.12201 * 359.97404 * 19 18 17 35 35 H 1.08001 * 119.92156 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.41995 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.89360 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2066 -0.7846 -1.3044 7 1 3.9939 -1.3345 -2.2094 8 6 4.7138 -1.4450 -0.1939 9 7 5.3743 -0.7742 0.7259 10 14 4.4593 -3.2859 -0.0050 11 1 5.5886 -4.0097 -0.6420 12 1 4.4005 -3.6320 1.4379 13 1 3.1863 -3.6794 -0.6607 14 6 4.1689 1.3870 -2.4494 15 6 5.5900 1.8867 -2.4912 16 7 5.9171 3.0062 -1.9463 17 16 7.5760 3.2647 -2.1714 18 6 7.8780 1.7761 -3.0706 19 6 9.0134 1.2163 -3.6398 20 6 8.9257 0.0164 -4.2890 21 6 7.7044 -0.6407 -4.3797 22 6 6.5778 -0.1113 -3.8307 23 6 6.6319 1.1256 -3.1517 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9787 2.1763 0.0889 31 1 5.7285 -1.2356 1.5022 32 1 3.4859 2.2359 -2.4208 33 1 3.9679 0.7885 -3.3380 34 1 9.9626 1.7267 -3.5700 35 1 9.8073 -0.4215 -4.7333 36 1 7.6485 -1.5878 -4.8957 37 1 5.6395 -0.6397 -3.9130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595524647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = 30.906913 kcal Electronic energy + Delta-G solvation = -21368.097420 eV Core-core repulsion = 18237.775550 eV Total energy + Delta-G solvation = -3130.321871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.35303 -37.33237 -36.38138 -34.81075 -31.45117 -30.73459 -29.87817 -29.19706 -26.61367 -25.69878 -23.54219 -22.76895 -22.22305 -20.81412 -19.12114 -17.93632 -16.79153 -15.79684 -15.76263 -15.20416 -14.94917 -14.77457 -14.57923 -14.05858 -14.03296 -13.60668 -13.33813 -13.08868 -13.00901 -11.86214 -11.79027 -11.67789 -11.49698 -11.25297 -11.02510 -10.89732 -10.79105 -10.70244 -10.29815 -10.21073 -10.07046 -9.79563 -9.76562 -9.27802 -8.87716 -8.53356 -8.42117 -7.31114 -6.75494 -5.85684 -3.34851 1.08120 1.64030 2.05284 2.55386 2.80718 3.36846 3.44844 3.50092 4.08918 4.47548 4.64374 4.99115 5.05017 5.22673 5.31214 5.43237 5.55975 5.72622 5.75868 5.77651 5.92571 6.02404 6.05907 6.08031 6.12453 6.22503 6.33718 6.36342 6.57796 6.61430 6.65409 6.78230 6.79482 7.16316 7.47663 7.62071 7.73696 8.00651 8.42177 9.06177 9.70382 10.23317 11.15958 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.006453 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.757655 B = 4338.167590 C = 5353.727242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.049 3.951 4 C 0.140 3.860 5 N -0.549 5.549 6 C -0.244 4.244 7 H 0.065 0.935 8 C 0.021 3.979 9 N -0.880 5.880 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.275 1.275 14 C 0.197 3.803 15 C 0.161 3.839 16 N -0.447 5.447 17 S 0.111 5.889 18 C -0.129 4.129 19 C -0.094 4.094 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.028 4.028 23 C -0.100 4.100 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.030 0.970 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.256 0.744 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 2.753 -7.777 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.030 4.030 4 C 0.014 3.986 5 N -0.267 5.267 6 C -0.374 4.374 7 H 0.083 0.917 8 C -0.181 4.181 9 N -0.522 5.522 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.200 1.200 14 C 0.065 3.935 15 C -0.031 4.031 16 N -0.259 5.259 17 S 0.264 5.736 18 C -0.249 4.249 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.159 4.159 22 C -0.050 4.050 23 C -0.112 4.112 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.788 4.649 -6.474 8.009 hybrid contribution -0.373 -2.242 -0.304 2.293 sum 0.416 2.407 -6.778 7.205 Atomic orbital electron populations 1.22631 0.84080 1.01509 0.98504 1.88188 1.16711 1.27772 1.94871 1.23334 0.98380 0.84092 0.97223 1.21137 0.87546 0.97570 0.92348 1.44055 1.72534 1.03811 1.06323 1.18961 1.36687 0.81801 0.99996 0.91699 1.25078 0.96131 0.98043 0.98802 1.69985 1.34387 1.35695 1.12086 0.86343 0.78173 0.85328 0.77191 1.21512 1.21563 1.19996 1.20212 0.85641 0.94453 0.93239 1.24222 1.01226 0.87768 0.89902 1.75958 1.04792 1.20183 1.25016 1.84464 1.09214 1.22217 1.57675 1.23420 0.97514 1.00688 1.03291 1.19826 0.95893 0.96403 0.99608 1.20882 0.97786 0.94442 0.98259 1.20655 0.92637 1.00511 1.02112 1.20772 0.99379 0.91991 0.92822 1.20260 0.91297 0.97550 1.02139 0.95202 0.90686 0.95502 0.95345 0.95217 0.87323 0.93595 0.93393 0.92194 0.91083 0.85892 0.85671 0.85753 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.59 10.44 -35.23 -0.37 -7.96 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.14 3.27 5.63 -4.04 -0.02 3.24 16 5 N -0.55 -12.93 2.39 -174.61 -0.42 -13.35 16 6 C -0.24 -6.20 9.28 -15.06 -0.14 -6.34 16 7 H 0.07 1.61 7.92 -52.48 -0.42 1.20 16 8 C 0.02 0.56 4.91 -17.43 -0.09 0.47 16 9 N -0.88 -24.89 11.35 55.49 0.63 -24.26 16 10 Si 0.90 21.37 29.61 -169.99 -5.03 16.34 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.20 4.02 5.96 -5.19 -0.03 3.99 16 15 C 0.16 3.41 6.46 -81.23 -0.52 2.88 16 16 N -0.45 -9.72 11.84 34.00 0.40 -9.32 16 17 S 0.11 2.14 23.86 -107.50 -2.56 -0.43 16 18 C -0.13 -2.44 6.71 -38.41 -0.26 -2.70 16 19 C -0.09 -1.47 10.02 -39.93 -0.40 -1.87 16 20 C -0.09 -1.28 10.01 -39.86 -0.40 -1.68 16 21 C -0.14 -2.07 9.92 -40.10 -0.40 -2.47 16 22 C -0.03 -0.49 9.72 -39.25 -0.38 -0.87 16 23 C -0.10 -2.02 6.04 -105.14 -0.64 -2.65 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.55 8.11 -51.93 -0.42 0.13 16 29 H 0.11 2.91 5.35 -51.93 -0.28 2.63 16 30 H 0.05 1.07 8.11 -51.93 -0.42 0.65 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 33 H 0.07 1.32 7.44 -51.93 -0.39 0.94 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.13 2.30 7.64 -52.49 -0.40 1.89 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -30.34 330.43 -9.14 -39.48 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.84 Total: -0.30 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.93 Total: -5.20 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.61 Total: -46.92 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.37 Total: -7.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.56 Total: -0.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.34 -9.14 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.386 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds