Wall clock time and date at job start Tue Mar 31 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00484 * 2 1 4 4 C 1.53003 * 109.47296 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47126 * 64.99729 * 4 3 2 6 6 C 1.36940 * 120.00081 * 264.43092 * 5 4 3 7 7 H 1.08003 * 119.99595 * 146.10163 * 6 5 4 8 8 C 1.38811 * 120.00121 * 326.10176 * 6 5 4 9 9 N 1.31619 * 119.99725 * 337.68786 * 8 6 5 10 10 Si 1.86799 * 119.99944 * 157.69362 * 8 6 5 11 11 H 1.48496 * 109.46908 * 89.99964 * 10 8 6 12 12 H 1.48502 * 109.46965 * 209.99666 * 10 8 6 13 13 H 1.48497 * 109.46946 * 329.99794 * 10 8 6 14 14 C 1.46503 * 119.99718 * 84.43314 * 5 4 3 15 15 C 1.50695 * 109.46866 * 89.99995 * 14 5 4 16 16 N 1.28735 * 121.08534 * 269.71216 * 15 14 5 17 17 S 1.69392 * 108.98666 * 179.90499 * 16 15 14 18 18 C 1.76512 * 96.11772 * 0.31545 * 17 16 15 19 19 C 1.38792 * 133.55309 * 179.83535 * 18 17 16 20 20 C 1.36716 * 119.75358 * 179.97438 * 19 18 17 21 21 C 1.38975 * 120.15319 * 0.02562 * 20 19 18 22 22 C 1.36042 * 121.16053 * 0.02562 * 21 20 19 23 23 C 1.40806 * 105.52004 * 359.82645 * 18 17 16 24 24 H 1.08995 * 109.47357 * 59.99401 * 1 2 3 25 25 H 1.09003 * 109.47697 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47036 * 299.99805 * 1 2 3 27 27 H 1.09001 * 109.46815 * 60.00301 * 3 2 1 28 28 H 1.08998 * 109.47129 * 300.00153 * 3 2 1 29 29 H 1.09000 * 109.46736 * 304.99985 * 4 3 2 30 30 H 1.08994 * 109.47295 * 184.99980 * 4 3 2 31 31 H 0.97002 * 120.00039 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47201 * 330.00130 * 14 5 4 33 33 H 1.09001 * 109.46731 * 209.99819 * 14 5 4 34 34 H 1.08000 * 120.12201 * 359.97404 * 19 18 17 35 35 H 1.08001 * 119.92156 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.41995 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.89360 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2066 -0.7846 -1.3044 7 1 3.9939 -1.3345 -2.2094 8 6 4.7138 -1.4450 -0.1939 9 7 5.3743 -0.7742 0.7259 10 14 4.4593 -3.2859 -0.0050 11 1 5.5886 -4.0097 -0.6420 12 1 4.4005 -3.6320 1.4379 13 1 3.1863 -3.6794 -0.6607 14 6 4.1689 1.3870 -2.4494 15 6 5.5900 1.8867 -2.4912 16 7 5.9171 3.0062 -1.9463 17 16 7.5760 3.2647 -2.1714 18 6 7.8780 1.7761 -3.0706 19 6 9.0134 1.2163 -3.6398 20 6 8.9257 0.0164 -4.2890 21 6 7.7044 -0.6407 -4.3797 22 6 6.5778 -0.1113 -3.8307 23 6 6.6319 1.1256 -3.1517 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9787 2.1763 0.0889 31 1 5.7285 -1.2356 1.5022 32 1 3.4859 2.2359 -2.4208 33 1 3.9679 0.7885 -3.3380 34 1 9.9626 1.7267 -3.5700 35 1 9.8073 -0.4215 -4.7333 36 1 7.6485 -1.5878 -4.8957 37 1 5.6395 -0.6397 -3.9130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595524647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:03 Heat of formation + Delta-G solvation = 13.439337 kcal Electronic energy + Delta-G solvation = -21368.854871 eV Core-core repulsion = 18237.775550 eV Total energy + Delta-G solvation = -3131.079322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73966 -38.90558 -37.86104 -36.50446 -33.33883 -32.04450 -31.24293 -30.80411 -28.36623 -27.10644 -25.24478 -24.14979 -23.58134 -22.51157 -20.70260 -19.36450 -18.61210 -17.36102 -17.13437 -16.80515 -16.54015 -16.19813 -15.94162 -15.71563 -15.57703 -15.20869 -14.77981 -14.61577 -14.48820 -13.50430 -13.31189 -13.11364 -12.93075 -12.74488 -12.65316 -12.53322 -12.42871 -12.31963 -12.02501 -11.94278 -11.60491 -11.53654 -11.38327 -10.65199 -10.47452 -10.34695 -9.77799 -8.79090 -8.62433 -7.80917 -5.33586 -0.30359 0.35363 0.61835 1.00403 1.32841 1.47744 1.53344 1.62226 2.55920 2.79946 3.18348 3.35791 3.59074 3.69774 3.75834 4.13248 4.34136 4.41413 4.44610 4.50850 4.54031 4.62925 4.63645 4.67452 4.70577 4.81696 4.87022 4.95869 4.97718 5.08785 5.25164 5.38237 5.54344 5.70399 5.76158 5.87527 6.00628 6.40386 6.63294 7.14127 7.82027 8.33369 9.19084 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.006453 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.757655 B = 4338.167590 C = 5353.727242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.060 3.940 4 C 0.143 3.857 5 N -0.562 5.562 6 C -0.233 4.233 7 H 0.069 0.931 8 C -0.028 4.028 9 N -0.919 5.919 10 Si 0.951 3.049 11 H -0.283 1.283 12 H -0.302 1.302 13 H -0.270 1.270 14 C 0.199 3.801 15 C 0.154 3.846 16 N -0.478 5.478 17 S 0.109 5.891 18 C -0.146 4.146 19 C -0.100 4.100 20 C -0.074 4.074 21 C -0.131 4.131 22 C -0.046 4.046 23 C -0.136 4.136 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.246 0.754 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 1.757 -9.904 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.019 4.019 4 C 0.017 3.983 5 N -0.281 5.281 6 C -0.363 4.363 7 H 0.087 0.913 8 C -0.225 4.225 9 N -0.563 5.563 10 Si 0.780 3.220 11 H -0.210 1.210 12 H -0.229 1.229 13 H -0.195 1.195 14 C 0.068 3.932 15 C -0.038 4.038 16 N -0.290 5.290 17 S 0.263 5.737 18 C -0.266 4.266 19 C -0.123 4.123 20 C -0.096 4.096 21 C -0.151 4.151 22 C -0.068 4.068 23 C -0.147 4.147 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.350 3.654 -8.630 9.469 hybrid contribution -0.482 -1.874 0.188 1.945 sum 0.868 1.779 -8.442 8.671 Atomic orbital electron populations 1.22836 0.81313 1.02820 1.00092 1.88108 1.19806 1.28333 1.95213 1.23088 0.95901 0.84205 0.98680 1.20941 0.90015 0.95957 0.91435 1.44066 1.73476 1.03753 1.06806 1.19141 1.34640 0.82892 0.99655 0.91302 1.25622 0.96861 1.00843 0.99130 1.70141 1.36868 1.36609 1.12731 0.85544 0.78211 0.82082 0.76189 1.21018 1.22921 1.19453 1.20227 0.85787 0.94708 0.92515 1.24354 1.01625 0.88009 0.89823 1.75821 1.06677 1.21068 1.25448 1.84236 1.07809 1.23269 1.58385 1.23707 0.98489 1.00271 1.04131 1.20328 0.95914 0.97142 0.98890 1.21456 0.98983 0.93104 0.96088 1.21150 0.91970 1.01451 1.00552 1.20964 1.00730 0.91503 0.93619 1.20440 0.91493 0.98988 1.03829 0.93618 0.89611 0.93782 0.93603 0.93785 0.90841 0.94795 0.94457 0.91227 0.89457 0.83101 0.80948 0.82239 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.57 10.44 -148.98 -1.56 -18.12 16 3 C 0.06 2.36 6.28 71.98 0.45 2.82 16 4 C 0.14 6.84 5.63 86.38 0.49 7.33 16 5 N -0.56 -26.79 2.39 -706.35 -1.69 -28.48 16 6 C -0.23 -11.90 9.28 84.03 0.78 -11.12 16 7 H 0.07 3.39 7.92 -2.91 -0.02 3.37 16 8 C -0.03 -1.49 4.91 84.86 0.42 -1.07 16 9 N -0.92 -53.84 11.35 21.65 0.25 -53.59 16 10 Si 0.95 44.43 29.61 68.60 2.03 46.46 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.20 8.17 5.96 85.63 0.51 8.68 16 15 C 0.15 6.60 6.46 44.73 0.29 6.89 16 16 N -0.48 -21.23 11.84 -46.33 -0.55 -21.78 16 17 S 0.11 4.27 23.86 -56.49 -1.35 2.92 16 18 C -0.15 -5.37 6.71 23.03 0.15 -5.22 16 19 C -0.10 -2.81 10.02 22.05 0.22 -2.59 16 20 C -0.07 -1.73 10.01 22.09 0.22 -1.51 16 21 C -0.13 -3.43 9.92 21.94 0.22 -3.21 16 22 C -0.05 -1.56 9.72 22.49 0.22 -1.34 16 23 C -0.14 -5.40 6.04 -20.20 -0.12 -5.52 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 29 H 0.07 4.12 5.35 -2.39 -0.01 4.10 16 30 H 0.03 1.65 8.11 -2.39 -0.02 1.63 16 31 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.07 2.66 8.04 -2.39 -0.02 2.64 16 33 H 0.09 3.22 7.44 -2.39 -0.02 3.20 16 34 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 35 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.13 4.41 7.64 -2.91 -0.02 4.39 16 Total: -1.00 -67.89 330.43 3.30 -64.59 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.07 Total: 11.85 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 5.09 Total: -3.84 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -1.99 Total: -103.86 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.56 Total: -18.12 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.35 Total: 2.92 kcal Total: -67.89 3.30 -64.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595524647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.028 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds