Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99604 * 2 1 4 4 H 1.48503 * 109.46811 * 269.99336 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99783 * 3 2 1 6 6 H 1.48505 * 109.47019 * 149.99763 * 3 2 1 7 7 C 1.37875 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99788 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46642 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.46978 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00135 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00155 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99948 * 180.02562 * 13 12 11 16 16 C 1.50699 * 109.46850 * 180.02562 * 15 13 12 17 17 C 1.38247 * 119.92634 * 270.01861 * 16 15 13 18 18 C 1.38240 * 120.14459 * 179.75199 * 17 16 15 19 19 C 1.38552 * 120.02633 * 0.42901 * 18 17 16 20 20 C 1.39265 * 119.82706 * 359.57585 * 19 18 17 21 21 C 1.38231 * 119.92969 * 90.00273 * 16 15 13 22 22 O 1.36496 * 108.64230 * 180.24572 * 20 19 18 23 23 C 1.43981 * 105.48444 * 342.72036 * 22 20 19 24 24 O 1.36505 * 131.53353 * 179.87931 * 19 18 17 25 25 H 0.97002 * 120.00375 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47353 * 60.00123 * 9 7 2 27 27 H 1.08997 * 109.47237 * 299.99803 * 9 7 2 28 28 H 1.08996 * 109.47094 * 60.00481 * 10 9 7 29 29 H 1.08997 * 109.47276 * 300.00045 * 10 9 7 30 30 H 1.09001 * 109.47379 * 60.00478 * 11 10 9 31 31 H 1.08997 * 109.47381 * 300.00053 * 11 10 9 32 32 H 1.08993 * 109.46905 * 60.00564 * 15 13 12 33 33 H 1.08998 * 109.46686 * 300.00421 * 15 13 12 34 34 H 1.07994 * 119.93290 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.99327 * 180.33354 * 18 17 16 36 36 H 1.08003 * 119.98943 * 0.02562 * 21 16 15 37 37 H 1.09007 * 110.56955 * 268.54960 * 23 22 20 38 38 H 1.09003 * 110.57719 * 145.67764 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6364 0.0022 12 8 6.0356 -4.0054 0.0027 13 6 7.3663 -4.1812 0.0022 14 8 8.1024 -3.2230 0.0018 15 6 7.9424 -5.5738 0.0021 16 6 9.4473 -5.4949 0.0021 17 6 10.1360 -5.4583 -1.1960 18 6 11.5162 -5.3807 -1.2012 19 6 12.2134 -5.3484 -0.0043 20 6 11.5195 -5.3854 1.2026 21 6 10.1360 -5.4589 1.2001 22 8 12.4214 -5.3370 2.2260 23 6 13.6894 -5.6819 1.6376 24 8 13.5501 -5.2770 0.2629 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6586 -3.1509 -0.8875 29 1 3.6579 -3.1498 0.8924 30 1 5.9149 -2.1219 0.8918 31 1 5.9148 -2.1233 -0.8881 32 1 7.6061 -6.1060 -0.8877 33 1 7.6067 -6.1059 0.8922 34 1 9.5945 -5.4859 -2.1299 35 1 12.0515 -5.3468 -2.1386 36 1 9.5954 -5.4878 2.1347 37 1 13.8633 -6.7560 1.7047 38 1 14.4977 -5.1313 2.1190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733866407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = -132.859135 kcal Electronic energy + Delta-G solvation = -21835.259524 eV Core-core repulsion = 18222.790602 eV Total energy + Delta-G solvation = -3612.468922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.49633 -40.42964 -38.45345 -36.62714 -36.46398 -34.08900 -32.74369 -31.81621 -30.79224 -28.51772 -27.29882 -25.95708 -23.45872 -23.32935 -22.44554 -20.80463 -20.20180 -18.29319 -17.90767 -17.75538 -17.55808 -16.87337 -16.59167 -16.40757 -15.90485 -14.93218 -14.80976 -14.33348 -14.19734 -14.17039 -13.91960 -13.33518 -13.31722 -12.89108 -12.77260 -12.71163 -12.51987 -12.07406 -11.90214 -11.46303 -11.19956 -11.06121 -10.96192 -10.57025 -10.44141 -10.00982 -9.81505 -9.73258 -9.25684 -9.18321 -8.57379 -8.37982 -6.07650 -4.06727 0.72373 0.89508 2.25942 2.39553 2.73097 3.07798 3.29583 3.35245 3.37468 3.40878 4.13774 4.23404 4.27069 4.42511 4.52299 4.58307 4.80636 4.84451 4.91589 5.01943 5.19461 5.21941 5.25657 5.45287 5.48618 5.65191 5.73065 5.84481 5.86671 5.99230 6.12015 6.34591 6.38116 6.66357 6.76929 6.80243 7.20431 7.31701 7.71684 7.86150 8.48974 8.96557 9.53891 11.05442 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.035242 B = 0.002347 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.316574 B =11927.173103 C =12184.325188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.066 3.934 12 O -0.356 6.356 13 C 0.456 3.544 14 O -0.504 6.504 15 C -0.071 4.071 16 C -0.064 4.064 17 C -0.090 4.090 18 C -0.098 4.098 19 C 0.032 3.968 20 C 0.032 3.968 21 C -0.082 4.082 22 O -0.308 6.308 23 C 0.213 3.787 24 O -0.310 6.310 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.417 -16.025 0.374 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.007 4.007 12 O -0.273 6.273 13 C 0.298 3.702 14 O -0.392 6.392 15 C -0.109 4.109 16 C -0.065 4.065 17 C -0.108 4.108 18 C -0.117 4.117 19 C -0.012 4.012 20 C -0.013 4.013 21 C -0.101 4.101 22 O -0.225 6.225 23 C 0.101 3.899 24 O -0.226 6.226 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 26.620 -15.465 0.487 30.790 hybrid contribution 0.650 1.116 0.160 1.302 sum 27.270 -14.349 0.647 30.822 Atomic orbital electron populations 1.69907 1.06273 1.26981 1.50844 1.25020 0.94767 0.99191 0.94472 0.86783 0.80379 0.83575 0.78598 1.20210 1.21285 1.18976 1.21051 0.89034 0.94659 1.51197 0.90783 1.19525 0.97536 0.91111 0.96674 1.21560 0.88750 1.00763 1.02829 1.23501 0.97033 0.78029 1.02110 1.86493 1.23196 1.34353 1.83243 1.23419 0.81455 0.92094 0.73195 1.90697 1.60649 1.43043 1.44783 1.20240 0.90699 0.92633 1.07287 1.18981 0.93806 1.01286 0.92419 1.20809 0.92630 0.99327 0.98081 1.20026 0.93366 1.03069 0.95216 1.19836 0.82558 1.03710 0.95094 1.19669 0.92075 1.04186 0.85328 1.19879 0.89216 1.01932 0.99075 1.87377 1.17288 1.86279 1.31525 1.25630 0.87146 1.00675 0.76406 1.87363 1.21321 1.84472 1.29464 0.92644 0.96299 0.96717 0.91519 0.91497 0.91541 0.91526 0.86172 0.86400 0.84215 0.84475 0.84576 0.89849 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -1.98 5.53 -26.73 -0.15 -2.13 16 11 C 0.07 1.13 5.47 37.16 0.20 1.33 16 12 O -0.36 -5.39 10.22 -39.26 -0.40 -5.79 16 13 C 0.46 6.14 7.95 36.01 0.29 6.43 16 14 O -0.50 -8.45 15.78 -18.75 -0.30 -8.74 16 15 C -0.07 -0.61 5.94 -29.03 -0.17 -0.78 16 16 C -0.06 -0.62 4.37 -104.62 -0.46 -1.08 16 17 C -0.09 -0.80 9.69 -39.58 -0.38 -1.18 16 18 C -0.10 -0.91 10.06 -39.46 -0.40 -1.31 16 19 C 0.03 0.35 7.15 -39.08 -0.28 0.07 16 20 C 0.03 0.36 7.15 -39.08 -0.28 0.08 16 21 C -0.08 -0.86 9.71 -39.47 -0.38 -1.24 16 22 O -0.31 -3.28 11.40 -45.68 -0.52 -3.81 16 23 C 0.21 1.53 8.89 101.05 0.90 2.43 16 24 O -0.31 -3.16 11.40 -45.70 -0.52 -3.68 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 31 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 32 H 0.12 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.12 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -34.64 332.32 -7.28 -41.92 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -5.00 Total: -4.03 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.66 Total: -11.00 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.74 Total: -22.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.64 -7.28 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733866407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.935 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds